assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000954115.1_ASM95411v1	NZ_CP010797	Rhodococcus sp. B7740 chromosome, complete genome	1	3086368-3086461	1	CRISPRCasFinder	no	csa3	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	Type I-A	GCCGGCAAACGCGCGCGCGTTTGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	NA|112aa|up_7|NZ_CP010797.1_3080778_3081114_-,NA|149aa|up_6|NZ_CP010797.1_3081117_3081564_-,NA|122aa|up_5|NZ_CP010797.1_3082219_3082585_-,NA|294aa|up_0|NZ_CP010797.1_3085410_3086292_+,NA|84aa|down_0|NZ_CP010797.1_3086655_3086907_+	NA|168aa|up_9|NZ_CP010797.1_3079347_3079851_+	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|254aa|up_8|NZ_CP010797.1_3079890_3080652_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|112aa|up_7|NZ_CP010797.1_3080778_3081114_-	NA	NA|149aa|up_6|NZ_CP010797.1_3081117_3081564_-	NA	NA|122aa|up_5|NZ_CP010797.1_3082219_3082585_-	NA	NA|190aa|up_4|NZ_CP010797.1_3082597_3083167_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|167aa|up_3|NZ_CP010797.1_3083191_3083692_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|306aa|up_2|NZ_CP010797.1_3083796_3084714_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|124aa|up_1|NZ_CP010797.1_3085006_3085378_+	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|294aa|up_0|NZ_CP010797.1_3085410_3086292_+	NA	NA|84aa|down_0|NZ_CP010797.1_3086655_3086907_+	NA	NA|254aa|down_1|NZ_CP010797.1_3087128_3087890_-	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|319aa|down_2|NZ_CP010797.1_3087899_3088856_-	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|280aa|down_3|NZ_CP010797.1_3088852_3089692_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|275aa|down_4|NZ_CP010797.1_3089688_3090513_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|313aa|down_5|NZ_CP010797.1_3090516_3091455_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|311aa|down_6|NZ_CP010797.1_3091454_3092387_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|526aa|down_7|NZ_CP010797.1_3092715_3094293_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|404aa|down_8|NZ_CP010797.1_3094313_3095525_+	COG4692, COG4692, Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism]	NA|231aa|down_9|NZ_CP010797.1_3095521_3096214_+	cd05233, SDR_c, classical (c) SDRs
GCF_000954115.1_ASM95411v1	NZ_CP010797	Rhodococcus sp. B7740 chromosome, complete genome	2	3489003-3489089	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas4,cas3,RT	Orphan	GAGTGCAAGGGTCCATTGACGCA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	NA|156aa|up_7|NZ_CP010797.1_3479924_3480392_-,NA|219aa|down_2|NZ_CP010797.1_3492146_3492803_-	NA|222aa|up_9|NZ_CP010797.1_3478581_3479247_+	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|181aa|up_8|NZ_CP010797.1_3479289_3479832_+	COG0716, FldA, Flavodoxins [Energy production and conversion]	NA|156aa|up_7|NZ_CP010797.1_3479924_3480392_-	NA	NA|292aa|up_6|NZ_CP010797.1_3480388_3481264_-	pfam00582, Usp, Universal stress protein family	NA|280aa|up_5|NZ_CP010797.1_3481519_3482359_+	pfam00582, Usp, Universal stress protein family	NA|339aa|up_4|NZ_CP010797.1_3482429_3483446_-	PRK07877, PRK07877, Rv1355c family protein	NA|211aa|up_3|NZ_CP010797.1_3483612_3484245_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|555aa|up_2|NZ_CP010797.1_3484343_3486008_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|307aa|up_1|NZ_CP010797.1_3486192_3487113_+	pfam00582, Usp, Universal stress protein family	NA|583aa|up_0|NZ_CP010797.1_3487200_3488949_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|711aa|down_0|NZ_CP010797.1_3489118_3491251_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|224aa|down_1|NZ_CP010797.1_3491389_3492061_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|219aa|down_2|NZ_CP010797.1_3492146_3492803_-	NA	NA|238aa|down_3|NZ_CP010797.1_3492869_3493583_-	PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional	NA|766aa|down_4|NZ_CP010797.1_3493983_3496281_+	PRK03355, PRK03355, glycerol-3-phosphate 1-O-acyltransferase	NA|476aa|down_5|NZ_CP010797.1_3496277_3497705_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|344aa|down_6|NZ_CP010797.1_3497697_3498729_+	cd07302, CHD, cyclase homology domain	NA|354aa|down_7|NZ_CP010797.1_3498710_3499772_-	TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family	NA|284aa|down_8|NZ_CP010797.1_3499768_3500620_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|425aa|down_9|NZ_CP010797.1_3500626_3501901_-	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family
GCF_000954115.1_ASM95411v1	NZ_CP010797	Rhodococcus sp. B7740 chromosome, complete genome	3	3974823-3974927	3	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas4,cas3,RT	Orphan	ATGGACCATTGCACCGTTCAGACGTGTGCAA	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	NA|241aa|up_8|NZ_CP010797.1_3968185_3968908_+,NA|290aa|down_4|NZ_CP010797.1_3978214_3979084_-	NA|256aa|up_9|NZ_CP010797.1_3967218_3967986_-	pfam10615, DUF2470, Protein of unknown function (DUF2470)	NA|241aa|up_8|NZ_CP010797.1_3968185_3968908_+	NA	NA|311aa|up_7|NZ_CP010797.1_3968917_3969850_+	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|222aa|up_6|NZ_CP010797.1_3969846_3970512_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|276aa|up_5|NZ_CP010797.1_3970504_3971332_-	pfam14011, ESX-1_EspG, EspG family	NA|390aa|up_4|NZ_CP010797.1_3971328_3972498_-	pfam00823, PPE, PPE family	NA|104aa|up_3|NZ_CP010797.1_3972551_3972863_-	pfam00934, PE, PE family	NA|189aa|up_2|NZ_CP010797.1_3972951_3973518_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|65aa|up_1|NZ_CP010797.1_3973830_3974025_+	pfam09489, CbtB, Probable cobalt transporter subunit (CbtB)	NA|264aa|up_0|NZ_CP010797.1_3974015_3974807_+	pfam09490, CbtA, Probable cobalt transporter subunit (CbtA)	NA|111aa|down_0|NZ_CP010797.1_3975012_3975345_-	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|362aa|down_1|NZ_CP010797.1_3975358_3976444_-	pfam13845, Septum_form, Septum formation	NA|131aa|down_2|NZ_CP010797.1_3976478_3976871_+	sd00045, ANK, ankyrin repeats	NA|418aa|down_3|NZ_CP010797.1_3976882_3978136_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|290aa|down_4|NZ_CP010797.1_3978214_3979084_-	NA	NA|247aa|down_5|NZ_CP010797.1_3979170_3979911_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|162aa|down_6|NZ_CP010797.1_3979920_3980406_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|484aa|down_7|NZ_CP010797.1_3980406_3981858_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|down_8|NZ_CP010797.1_3981854_3982514_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|240aa|down_9|NZ_CP010797.1_3982666_3983386_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated
GCF_000954115.1_ASM95411v1	NZ_CP010797	Rhodococcus sp. B7740 chromosome, complete genome	4	4270147-4270240	4	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas4,cas3,RT	Orphan	CCGCGTCAATGGACCACTGCATACGTCTGA	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	NA,NA|411aa|down_7|NZ_CP010797.1_4277742_4278975_+	NA|280aa|up_9|NZ_CP010797.1_4259838_4260678_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|412aa|up_8|NZ_CP010797.1_4260674_4261910_-	PRK11622, PRK11622, ABC transporter substrate-binding protein	NA|207aa|up_7|NZ_CP010797.1_4262102_4262723_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|204aa|up_6|NZ_CP010797.1_4262719_4263331_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|488aa|up_5|NZ_CP010797.1_4263302_4264766_-	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|217aa|up_4|NZ_CP010797.1_4264802_4265453_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|143aa|up_3|NZ_CP010797.1_4265569_4265998_+	pfam12120, Arr-ms, Rifampin ADP-ribosyl transferase	NA|314aa|up_2|NZ_CP010797.1_4266933_4267875_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|472aa|up_1|NZ_CP010797.1_4267979_4269395_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|249aa|up_0|NZ_CP010797.1_4269391_4270138_+	TIGR01963, D-beta-hydroxybutyrate_dehydrogenase, 3-hydroxybutyrate dehydrogenase	NA|429aa|down_0|NZ_CP010797.1_4270683_4271970_+	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|506aa|down_1|NZ_CP010797.1_4272024_4273542_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|224aa|down_2|NZ_CP010797.1_4273646_4274318_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|417aa|down_3|NZ_CP010797.1_4274503_4275754_+	pfam03583, LIP, Secretory lipase	NA|110aa|down_4|NZ_CP010797.1_4275779_4276109_-	PRK02237, PRK02237, YnfA family protein	NA|218aa|down_5|NZ_CP010797.1_4276214_4276868_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|284aa|down_6|NZ_CP010797.1_4276857_4277709_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|411aa|down_7|NZ_CP010797.1_4277742_4278975_+	NA	NA|908aa|down_8|NZ_CP010797.1_4279301_4282025_+	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein	NA|192aa|down_9|NZ_CP010797.1_4282131_4282707_+	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein
GCF_000954115.1_ASM95411v1	NZ_CP010797	Rhodococcus sp. B7740 chromosome, complete genome	5	4555687-4555784	5	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas4,cas3,RT	Orphan	AATGGACCATTGCACGGCTCAGACGTATGCAATG	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	NA,NA	NA|258aa|up_9|NZ_CP010797.1_4546299_4547073_-	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|464aa|up_8|NZ_CP010797.1_4547190_4548582_+	PRK09952, PRK09952, shikimate transporter; Provisional	NA|279aa|up_7|NZ_CP010797.1_4548578_4549415_+	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|285aa|up_6|NZ_CP010797.1_4549404_4550259_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|201aa|up_5|NZ_CP010797.1_4550255_4550858_-	smart00796, AHS1, Allophanate hydrolase subunit 1	NA|256aa|up_4|NZ_CP010797.1_4550854_4551622_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|293aa|up_3|NZ_CP010797.1_4551623_4552502_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|278aa|up_2|NZ_CP010797.1_4552498_4553332_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|340aa|up_1|NZ_CP010797.1_4553380_4554400_-	cd01020, TroA_b, Metal binding protein TroA_b	NA|369aa|up_0|NZ_CP010797.1_4554541_4555648_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|851aa|down_0|NZ_CP010797.1_4555816_4558369_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|248aa|down_1|NZ_CP010797.1_4558428_4559172_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|187aa|down_2|NZ_CP010797.1_4559252_4559813_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|101aa|down_3|NZ_CP010797.1_4559932_4560235_+	pfam02467, Whib, Transcription factor WhiB	NA|240aa|down_4|NZ_CP010797.1_4560435_4561155_+	pfam10935, DUF2637, Protein of unknown function (DUF2637)	NA|171aa|down_5|NZ_CP010797.1_4561177_4561690_+	pfam04248, NTP_transf_9, Domain of unknown function (DUF427)	NA|347aa|down_6|NZ_CP010797.1_4561693_4562734_-	sd00042, LVIVD, LVIVD repeat	NA|212aa|down_7|NZ_CP010797.1_4562733_4563369_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|758aa|down_8|NZ_CP010797.1_4563365_4565639_-	cd01948, EAL, EAL domain	NA|198aa|down_9|NZ_CP010797.1_4565795_4566389_+	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal
GCF_000954115.1_ASM95411v1	NZ_CP010797	Rhodococcus sp. B7740 chromosome, complete genome	6	4599052-4599134	6	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas4,cas3,RT	Orphan	CGATCTTCTCGGTGGCTGCGTCGGCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas4,cas3,RT	NA|199aa|up_9|NZ_CP010797.1_4590190_4590787_-,NA|151aa|up_7|NZ_CP010797.1_4591526_4591979_-,NA|151aa|up_5|NZ_CP010797.1_4593150_4593603_+,NA|222aa|down_5|NZ_CP010797.1_4603217_4603883_-	NA|199aa|up_9|NZ_CP010797.1_4590190_4590787_-	NA	NA|212aa|up_8|NZ_CP010797.1_4590920_4591556_+	pfam07947, YhhN, YhhN family	NA|151aa|up_7|NZ_CP010797.1_4591526_4591979_-	NA	NA|266aa|up_6|NZ_CP010797.1_4592059_4592857_+	PRK08267, PRK08267, SDR family oxidoreductase	NA|151aa|up_5|NZ_CP010797.1_4593150_4593603_+	NA	NA|225aa|up_4|NZ_CP010797.1_4593614_4594289_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|379aa|up_3|NZ_CP010797.1_4594363_4595500_+	COG4833, COG4833, Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]	NA|232aa|up_2|NZ_CP010797.1_4595531_4596227_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|235aa|up_1|NZ_CP010797.1_4596255_4596960_-	PRK10847, PRK10847, DedA family protein	NA|347aa|up_0|NZ_CP010797.1_4597249_4598290_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|139aa|down_0|NZ_CP010797.1_4599315_4599732_+	pfam11349, DUF3151, Protein of unknown function (DUF3151)	NA|365aa|down_1|NZ_CP010797.1_4599769_4600864_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|310aa|down_2|NZ_CP010797.1_4600942_4601872_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|139aa|down_3|NZ_CP010797.1_4601861_4602278_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|258aa|down_4|NZ_CP010797.1_4602447_4603221_-	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|222aa|down_5|NZ_CP010797.1_4603217_4603883_-	NA	NA|430aa|down_6|NZ_CP010797.1_4604085_4605375_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|175aa|down_7|NZ_CP010797.1_4606311_4606836_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|494aa|down_8|NZ_CP010797.1_4606927_4608409_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|359aa|down_9|NZ_CP010797.1_4608494_4609571_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
