assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000963645.1_ASM96364v1	NZ_CP011100	Aeromonas hydrophila strain AH10, complete genome	1	321468-321560	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG	Orphan	GATCTCGCCTCCGGCCTGCGCCGC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG	NA|172aa|up_9|NZ_CP011100.1_313986_314502_+,NA|32aa|up_6|NZ_CP011100.1_316537_316633_+,NA	NA|172aa|up_9|NZ_CP011100.1_313986_314502_+	NA	NA|427aa|up_8|NZ_CP011100.1_314498_315779_+	PRK15115, PRK15115, response regulator GlrR; Provisional	NA|161aa|up_7|NZ_CP011100.1_315851_316334_-	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|32aa|up_6|NZ_CP011100.1_316537_316633_+	NA	NA|334aa|up_5|NZ_CP011100.1_316704_317706_+	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA|211aa|up_4|NZ_CP011100.1_317725_318358_+	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA|82aa|up_3|NZ_CP011100.1_318402_318648_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|111aa|up_2|NZ_CP011100.1_318711_319044_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|219aa|up_1|NZ_CP011100.1_319130_319787_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|450aa|up_0|NZ_CP011100.1_319824_321174_+	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG	NA|827aa|down_0|NZ_CP011100.1_321819_324300_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|377aa|down_1|NZ_CP011100.1_324322_325453_-	TIGR02162, Cytochrome_c-type_protein_TorC, trimethylamine-N-oxide reductase c-type cytochrome TorC	NA|656aa|down_2|NZ_CP011100.1_325816_327784_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|145aa|down_3|NZ_CP011100.1_327825_328260_-	pfam04224, DUF417, Protein of unknown function, DUF417	NA|178aa|down_4|NZ_CP011100.1_328273_328807_-	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme	NA|276aa|down_5|NZ_CP011100.1_328907_329735_+	pfam12852, Cupin_6, Cupin	NA|452aa|down_6|NZ_CP011100.1_329762_331118_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|218aa|down_7|NZ_CP011100.1_331114_331768_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|346aa|down_8|NZ_CP011100.1_331895_332933_+	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|322aa|down_9|NZ_CP011100.1_332929_333895_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA
GCF_000963645.1_ASM96364v1	NZ_CP011100	Aeromonas hydrophila strain AH10, complete genome	2	757196-757300	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG	Orphan	CTAAACGCCAAGGTTTGATCCGAATGAAATCTG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG	NA,NA	NA|519aa|up_9|NZ_CP011100.1_749196_750753_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|379aa|up_8|NZ_CP011100.1_750765_751902_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|39aa|up_7|NZ_CP011100.1_751916_752033_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|104aa|up_6|NZ_CP011100.1_752019_752331_+	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE)	NA|136aa|up_5|NZ_CP011100.1_752436_752844_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|230aa|up_4|NZ_CP011100.1_752833_753523_+	TIGR02796, Protein_TolQ, TolQ protein	NA|149aa|up_3|NZ_CP011100.1_753522_753969_+	TIGR02801, Protein_TolR, TolR protein	NA|388aa|up_2|NZ_CP011100.1_753974_755138_+	pfam06519, TolA, TolA C-terminal	NA|442aa|up_1|NZ_CP011100.1_755232_756558_+	PRK04792, tolB, Tol-Pal system protein TolB	NA|175aa|up_0|NZ_CP011100.1_756607_757132_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|702aa|down_0|NZ_CP011100.1_759684_761790_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|345aa|down_1|NZ_CP011100.1_761969_763004_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|289aa|down_2|NZ_CP011100.1_763074_763941_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|332aa|down_3|NZ_CP011100.1_764056_765052_-	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase	NA|759aa|down_4|NZ_CP011100.1_765311_767588_+	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional	NA|726aa|down_5|NZ_CP011100.1_767670_769848_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|714aa|down_6|NZ_CP011100.1_769847_771989_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|131aa|down_7|NZ_CP011100.1_772045_772438_+	pfam01641, SelR, SelR domain	NA|396aa|down_8|NZ_CP011100.1_772520_773708_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|148aa|down_9|NZ_CP011100.1_773934_774378_-	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X
GCF_000963645.1_ASM96364v1	NZ_CP011100	Aeromonas hydrophila strain AH10, complete genome	3	780453-780557	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG	Orphan	GGTGACATGAGTCGTTTTCAGGCCATTGC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG	NA,NA|700aa|down_7|NZ_CP011100.1_789484_791584_-,NA|155aa|down_8|NZ_CP011100.1_791644_792109_-	NA|396aa|up_9|NZ_CP011100.1_772520_773708_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|148aa|up_8|NZ_CP011100.1_773934_774378_-	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|335aa|up_7|NZ_CP011100.1_774535_775540_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|159aa|up_6|NZ_CP011100.1_775622_776099_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|up_5|NZ_CP011100.1_776142_776637_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|76aa|up_4|NZ_CP011100.1_776672_776900_+	COG3017, LolB, Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]	NA|106aa|up_3|NZ_CP011100.1_777045_777363_+	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|159aa|up_2|NZ_CP011100.1_777452_777929_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|207aa|up_1|NZ_CP011100.1_778238_778859_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|414aa|up_0|NZ_CP011100.1_779025_780267_+	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters	NA|188aa|down_0|NZ_CP011100.1_781406_781970_-	pfam10973, DUF2799, Protein of unknown function (DUF2799)	NA|280aa|down_1|NZ_CP011100.1_782178_783018_+	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|438aa|down_2|NZ_CP011100.1_783232_784546_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|239aa|down_3|NZ_CP011100.1_784546_785263_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|438aa|down_4|NZ_CP011100.1_785718_787032_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|542aa|down_5|NZ_CP011100.1_787053_788679_-	cd17624, REC_OmpR_PmrA-like, phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators	NA|242aa|down_6|NZ_CP011100.1_788789_789515_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|700aa|down_7|NZ_CP011100.1_789484_791584_-	NA	NA|155aa|down_8|NZ_CP011100.1_791644_792109_-	NA	NA|459aa|down_9|NZ_CP011100.1_792150_793527_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCF_000963645.1_ASM96364v1	NZ_CP011100	Aeromonas hydrophila strain AH10, complete genome	4	1706905-1706996	4	CRISPRCasFinder	no	DinG	WYL,cas3,DEDDh,csa3,cas5,DinG	Type IV-A	GCTTGGTGTAATCCTGCGCTTTGGCT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG	NA|292aa|up_4|NZ_CP011100.1_1699616_1700492_+,NA	NA|383aa|up_9|NZ_CP011100.1_1692656_1693805_+	PRK03633, PRK03633, putative MFS family transporter protein; Provisional	NA|320aa|up_8|NZ_CP011100.1_1693984_1694944_-	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	NA|220aa|up_7|NZ_CP011100.1_1694965_1695625_-	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)	DinG|707aa|up_6|NZ_CP011100.1_1695798_1697919_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|356aa|up_5|NZ_CP011100.1_1698252_1699320_+	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	NA|292aa|up_4|NZ_CP011100.1_1699616_1700492_+	NA	NA|397aa|up_3|NZ_CP011100.1_1700667_1701858_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|503aa|up_2|NZ_CP011100.1_1701935_1703444_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|165aa|up_1|NZ_CP011100.1_1703566_1704061_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|173aa|up_0|NZ_CP011100.1_1704054_1704573_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|590aa|down_0|NZ_CP011100.1_1707032_1708802_+	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|334aa|down_1|NZ_CP011100.1_1708801_1709803_+	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|63aa|down_2|NZ_CP011100.1_1709924_1710113_+	PRK11827, PRK11827, protein YcaR	NA|254aa|down_3|NZ_CP011100.1_1710109_1710871_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|215aa|down_4|NZ_CP011100.1_1711083_1711728_+	PRK09483, PRK09483, response regulator; Provisional	NA|617aa|down_5|NZ_CP011100.1_1711916_1713767_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|185aa|down_6|NZ_CP011100.1_1714071_1714626_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|430aa|down_7|NZ_CP011100.1_1715349_1716639_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|694aa|down_8|NZ_CP011100.1_1717186_1719268_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|664aa|down_9|NZ_CP011100.1_1719447_1721439_-	TIGR03509, OMP_MtrB_PioB, decaheme-associated outer membrane protein, MtrB/PioB family
GCF_000963645.1_ASM96364v1	NZ_CP011100	Aeromonas hydrophila strain AH10, complete genome	5	1736336-1736432	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG	Orphan	GCAATGCGCTTCGCTTATTGGCACCCTACCT	31	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG	NA|602aa|up_1|NZ_CP011100.1_1732806_1734612_-,NA|177aa|up_0|NZ_CP011100.1_1734873_1735404_-,NA|103aa|down_0|NZ_CP011100.1_1736614_1736923_+	NA|210aa|up_9|NZ_CP011100.1_1725601_1726231_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|223aa|up_8|NZ_CP011100.1_1726227_1726896_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|318aa|up_7|NZ_CP011100.1_1726944_1727898_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|242aa|up_6|NZ_CP011100.1_1727973_1728699_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|237aa|up_5|NZ_CP011100.1_1728695_1729406_-	pfam14091, DUF4269, Domain of unknown function (DUF4269)	NA|166aa|up_4|NZ_CP011100.1_1729395_1729893_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|459aa|up_3|NZ_CP011100.1_1730083_1731460_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|120aa|up_2|NZ_CP011100.1_1731693_1732053_-	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|602aa|up_1|NZ_CP011100.1_1732806_1734612_-	NA	NA|177aa|up_0|NZ_CP011100.1_1734873_1735404_-	NA	NA|103aa|down_0|NZ_CP011100.1_1736614_1736923_+	NA	NA|338aa|down_1|NZ_CP011100.1_1737608_1738622_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|249aa|down_2|NZ_CP011100.1_1738679_1739426_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|249aa|down_3|NZ_CP011100.1_1739527_1740274_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|166aa|down_4|NZ_CP011100.1_1740347_1740845_-	pfam14345, GDYXXLXY, GDYXXLXY protein	NA|336aa|down_5|NZ_CP011100.1_1740841_1741849_-	pfam14351, DUF4401, Domain of unknown function (DUF4401)	NA|370aa|down_6|NZ_CP011100.1_1741841_1742951_-	pfam09925, DUF2157, Predicted membrane protein (DUF2157)	NA|186aa|down_7|NZ_CP011100.1_1742982_1743540_-	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|125aa|down_8|NZ_CP011100.1_1743796_1744171_-	PRK09019, PRK09019, stress response translation initiation inhibitor YciH	NA|76aa|down_9|NZ_CP011100.1_1744245_1744473_+	pfam04023, FeoA, FeoA domain
GCF_000963645.1_ASM96364v1	NZ_CP011100	Aeromonas hydrophila strain AH10, complete genome	6	3529214-3529650	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,cas5,DinG	Orphan	GTCAGCACGTTGGCACCGCCCAGCAG	26	0	0	NA	NA	NA	7	7	Orphan	WYL,cas3,DEDDh,csa3,cas5,DinG	NA,NA|133aa|down_1|NZ_CP011100.1_3532177_3532576_-	NA|147aa|up_9|NZ_CP011100.1_3506956_3507397_-	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|444aa|up_8|NZ_CP011100.1_3507423_3508755_-	PRK08972, fliI, flagellar protein export ATPase FliI	NA|269aa|up_7|NZ_CP011100.1_3508827_3509634_-	PRK05687, fliH, flagellar assembly protein FliH	NA|354aa|up_6|NZ_CP011100.1_3509698_3510760_-	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|561aa|up_5|NZ_CP011100.1_3510752_3512435_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|106aa|up_4|NZ_CP011100.1_3512522_3512840_-	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed	NA|259aa|up_3|NZ_CP011100.1_3513042_3513819_-	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|437aa|up_2|NZ_CP011100.1_3513971_3515282_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|443aa|up_1|NZ_CP011100.1_3515333_3516662_+	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|165aa|up_0|NZ_CP011100.1_3516762_3517257_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|150aa|down_0|NZ_CP011100.1_3531695_3532145_-	pfam02794, HlyC, RTX toxin acyltransferase family	NA|133aa|down_1|NZ_CP011100.1_3532177_3532576_-	NA	NA|696aa|down_2|NZ_CP011100.1_3532884_3534972_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|455aa|down_3|NZ_CP011100.1_3534968_3536333_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|720aa|down_4|NZ_CP011100.1_3536335_3538495_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|236aa|down_5|NZ_CP011100.1_3538600_3539308_+	PRK10816, PRK10816, two-component system response regulator PhoP	NA|453aa|down_6|NZ_CP011100.1_3539331_3540690_+	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|323aa|down_7|NZ_CP011100.1_3540992_3541961_-	PRK00292, glk, glucokinase; Provisional	NA|288aa|down_8|NZ_CP011100.1_3542301_3543165_+	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|480aa|down_9|NZ_CP011100.1_3543328_3544768_+	PRK05826, PRK05826, pyruvate kinase; Provisional
