The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	732806	740627	2759512		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|732806_733862_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|733861_734548_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|734522_734996_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|735338_735779_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|736058_736643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|736741_737455_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|737458_737878_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|737879_738548_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|738898_739492_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|739475_740627_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 2
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	752598	767239	2759512		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|752598_753657_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|753995_754538_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|755416_756334_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|756424_756526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|756603_758109_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|758449_758950_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|758969_759836_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|760636_761035_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|760997_763103_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|763220_764192_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|764372_764528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|764566_765538_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|765524_766481_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|766477_767239_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	1020214	1028687	2759512		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1020214_1020697_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1020683_1021808_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1021811_1022516_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1022515_1022779_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1022780_1023452_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1023444_1025634_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483721.1|1025612_1027097_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	2.5e-45
WP_000030811.1|1027089_1028118_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1028120_1028687_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	1646780	1655823	2759512	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1646780_1647299_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1647320_1649594_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1649796_1652076_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1652350_1652611_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1652629_1653769_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1653791_1654817_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1654818_1655823_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	1787226	1833569	2759512	tRNA,protease	Staphylococcus_phage(94.29%)	42	NA	NA
WP_001050573.1|1787226_1793787_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	4.0e-305
WP_000836461.1|1794112_1794424_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1794445_1796863_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1797150_1798332_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1798441_1799395_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1799391_1799955_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1800077_1800479_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1801050_1801878_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1801880_1802000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1802111_1803113_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1803234_1803699_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159036.1|1803711_1804893_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
WP_000493887.1|1804903_1805536_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1805542_1806586_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1807066_1808569_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1809091_1809406_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1809405_1810698_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1810784_1811639_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1811914_1812139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1812337_1812808_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1812920_1813364_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1813350_1813794_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1814089_1814725_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1815164_1815878_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1816137_1816440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1816695_1817061_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_031870300.1|1817057_1817411_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
WP_000453306.1|1819528_1820362_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1820573_1821482_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1821603_1822800_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1823171_1824764_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1825141_1825888_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1825892_1826366_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1826431_1826689_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_015445868.1|1826685_1827687_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	1.3e-183
WP_000348364.1|1827691_1829170_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1829328_1829784_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1830086_1830737_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1830817_1831813_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1831887_1832514_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1832554_1832896_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1832996_1833569_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
>prophage 6
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	1837537	1845042	2759512	protease	Staphylococcus_phage(100.0%)	8	NA	NA
WP_000028669.1|1837537_1839094_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1839257_1839392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1839454_1840174_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1840275_1840383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038873.1|1841170_1841890_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
WP_001039454.1|1841947_1842670_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039426.1|1842794_1843502_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
WP_001092780.1|1844460_1845042_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 7
NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2759512	1943367	2025355	2759512	capsid,head,protease,tail,holin,terminase,tRNA,portal	Staphylococcus_phage(80.56%)	106	NA	NA
WP_000170162.1|1943367_1943670_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1944036_1945575_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|1945663_1946863_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|1946875_1948879_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|1948882_1951075_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|1951071_1951764_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1951935_1952238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1952346_1953642_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|1954501_1955668_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1955698_1956025_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1956316_1956490_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1956470_1957073_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1957343_1958165_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1958157_1959627_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1959810_1960887_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1960906_1961701_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1961772_1961880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1961890_1963453_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|1963657_1964755_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1965123_1965684_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1965736_1966666_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1966858_1967032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1967083_1968463_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1968582_1969611_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1969880_1970282_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1970855_1971029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1971479_1972520_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1972576_1973419_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1973415_1973973_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1974032_1974557_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1974677_1975241_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1975306_1976047_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1976046_1976919_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1976915_1977596_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_015445884.1|1977596_1978493_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1978489_1978870_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1979127_1979304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1979546_1979645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1979844_1981131_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|1981409_1981700_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|1981714_1983145_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669791.1|1984102_1984282_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|1984592_1984853_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1984905_1985256_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|1986752_1987244_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|1987434_1988190_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1988201_1988456_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|1988507_1988615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1988667_1988844_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750412.1|1988952_1989726_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|1990098_1990473_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|1990528_1990816_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|1990861_1991014_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_015445885.1|1991006_1994789_-	phage protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.5	0.0e+00
WP_000567390.1|1994804_1996289_-|tail	phage tail family protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_015445887.1|1996285_2000815_-|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	91.5	0.0e+00
WP_001549167.1|2000871_2001009_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2001059_2001410_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2001459_2001684_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2001725_2002370_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2002370_2002778_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|2002774_2003179_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2003175_2003538_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2003521_2003806_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2003795_2004080_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|2004099_2005245_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000861914.1|2005268_2006006_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000025274.1|2005989_2007177_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_015445889.1|2007192_2008854_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000402904.1|2008850_2009195_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2009324_2009624_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|2009855_2010272_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265041.1|2010299_2010500_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000595265.1|2010499_2010649_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195820.1|2010645_2010852_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_000185680.1|2010888_2011425_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_041174218.1|2011417_2011666_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	98.8	1.2e-37
WP_001614813.1|2011658_2011967_-	hypothetical protein	NA	C8CH03	Staphylococcus_phage	99.0	2.8e-52
WP_000979209.1|2011963_2012311_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695762.1|2012307_2012709_-	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
WP_012068339.1|2012721_2012970_-	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000022735.1|2012969_2013224_-	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_111023892.1|2013223_2013274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001187230.1|2013309_2013495_-	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
WP_031895320.1|2013499_2013904_-	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
WP_000451861.1|2013900_2014326_-	phage N-6-adenine-methyltransferase	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
WP_001123688.1|2014335_2014557_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001024405.1|2014560_2014776_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_015445891.1|2014772_2016014_-	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
WP_001132243.1|2016010_2016367_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001037657.1|2016366_2017122_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_015445893.1|2017114_2017789_-	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
WP_001004506.1|2017789_2018341_-	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_000934384.1|2018351_2018777_-	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
WP_000139720.1|2018776_2019400_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815403.1|2019392_2019614_-	DUF2483 family protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000291076.1|2019623_2019884_-	DUF1108 family protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
WP_000066021.1|2019975_2020137_-	DUF1270 family protein	NA	Q4ZBM9	Staphylococcus_phage	100.0	3.8e-21
WP_001124198.1|2020148_2020412_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001038398.1|2020441_2020660_-	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
WP_001025595.1|2020656_2020983_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_001814660.1|2021038_2021671_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	92.4	7.6e-105
WP_000939500.1|2021685_2021826_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.4e-16
WP_000240642.1|2022460_2024077_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2024152_2024437_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2024611_2025355_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NC_020531	Staphylococcus aureus subsp. aureus ST228 plasmid pI2T2, complete sequence	30854	0	20661	30854	transposase	Streptococcus_phage(30.0%)	19	NA	NA
WP_000003264.1|891_3075_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	64.0	8.1e-255
WP_000726007.1|3067_3436_-	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	85.2	4.2e-55
WP_000733283.1|3998_4844_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
WP_001096374.1|4950_6708_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284656.1|6697_7078_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690625.1|7341_7920_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
WP_000583528.1|8045_8654_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_001049146.1|8899_9238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000797248.1|9242_9428_+	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_015445979.1|9560_10127_-	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000622776.1|10304_11849_+	quaternary ammonium compound efflux MFS transporter QacA	NA	A0A0M3UL24	Mycobacterium_phage	26.8	4.2e-32
WP_001077893.1|12053_12614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807343.1|12689_12812_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_000848988.1|12929_13700_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001132442.1|14143_15088_+	replication initiator protein A	NA	Q9MCM7	Streptococcus_virus	47.1	1.5e-19
WP_001030803.1|16135_16324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000119692.1|17342_17690_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	1.9e-12
WP_078065292.1|19038_19950_-	protein rep	NA	NA	NA	NA	NA
WP_012816671.1|19986_20661_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	86.6	7.6e-111
>prophage 2
NC_020531	Staphylococcus aureus subsp. aureus ST228 plasmid pI2T2, complete sequence	30854	23741	27620	30854	transposase	Staphylococcus_phage(50.0%)	4	NA	NA
WP_001105988.1|23741_24416_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000377078.1|24534_25050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000790333.1|25244_25895_-	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000193219.1|25976_27620_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
