assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	1	164271-164355	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	164297-164329|164297-164329|164297-164329	NC_020564.1_801224-801192|NC_020564.1_801283-801251|NC_020564.1_1415663-1415631	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_020564.1_153416_154622_+,NA|68aa|down_0|NC_020564.1_164416_164620_-	NA|402aa|up_9|NC_020564.1_153416_154622_+	NA	NA|402aa|up_8|NC_020564.1_154622_155828_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_020564.1_155838_156396_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_020564.1_156395_157283_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_020564.1_157336_158599_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_020564.1_158675_159821_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_020564.1_159885_160212_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_020564.1_160218_160602_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_020564.1_161028_162516_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_020564.1_163162_164122_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_020564.1_164416_164620_-	NA	NA|171aa|down_1|NC_020564.1_164798_165311_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_020564.1_165652_166393_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_020564.1_166406_167378_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_020564.1_167374_168136_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_020564.1_168148_169180_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_020564.1_169396_169756_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_020564.1_169929_170955_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_020564.1_171340_172591_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_020564.1_173037_180213_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	2	403517-403618	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_020564.1_393556_393766_-,NA|128aa|up_7|NC_020564.1_394590_394974_-,NA|33aa|up_1|NC_020564.1_401221_401320_+,NA|221aa|down_1|NC_020564.1_404708_405371_-,NA|179aa|down_7|NC_020564.1_411462_411999_-	NA|70aa|up_9|NC_020564.1_393556_393766_-	NA	NA|194aa|up_8|NC_020564.1_393943_394525_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_020564.1_394590_394974_-	NA	NA|209aa|up_6|NC_020564.1_395243_395870_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_020564.1_396313_397837_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_020564.1_397852_398422_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_020564.1_398913_399669_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_020564.1_399748_401137_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_020564.1_401221_401320_+	NA	NA|440aa|up_0|NC_020564.1_401983_403303_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_020564.1_403634_404591_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_020564.1_404708_405371_-	NA	NA|136aa|down_2|NC_020564.1_405513_405921_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_020564.1_406433_407012_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_020564.1_407011_408280_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_020564.1_408317_409784_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_020564.1_409808_411350_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_020564.1_411462_411999_-	NA	NA|235aa|down_8|NC_020564.1_412390_413095_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_020564.1_413493_413766_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	3	754687-754769	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_020564.1_741300_741507_+,NA|34aa|down_1|NC_020564.1_756424_756526_+,NA|52aa|down_8|NC_020564.1_764372_764528_+	NA|69aa|up_9|NC_020564.1_741300_741507_+	NA	NA|237aa|up_8|NC_020564.1_741594_742305_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_020564.1_742288_743293_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_020564.1_743766_745707_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_020564.1_745976_747860_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_020564.1_747871_749653_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_020564.1_749874_750852_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_020564.1_750844_752359_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_020564.1_752598_753657_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_020564.1_753995_754538_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_020564.1_755416_756334_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_020564.1_756424_756526_+	NA	NA|502aa|down_2|NC_020564.1_756603_758109_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_020564.1_758449_758950_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_020564.1_758969_759836_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_020564.1_760636_761035_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_020564.1_760997_763103_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_020564.1_763220_764192_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_020564.1_764372_764528_+	NA	NA|324aa|down_9|NC_020564.1_764566_765538_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	4	795634-795712	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	795658-795688|795658-795688|795658-795688	NC_020564.1_287499-287469|NC_020564.1_287444-287414|NC_020564.1_1631592-1631622	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_020564.1_786510_786615_+,NA|36aa|up_5|NC_020564.1_788047_788155_+,NA	NA|191aa|up_9|NC_020564.1_782951_783524_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_020564.1_783937_786469_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_020564.1_786510_786615_+	NA	NA|370aa|up_6|NC_020564.1_786783_787894_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_020564.1_788047_788155_+	NA	NA|280aa|up_4|NC_020564.1_788302_789142_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_020564.1_789315_789966_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_020564.1_789962_790199_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_020564.1_790467_792453_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_020564.1_792460_795307_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_020564.1_795970_796903_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_020564.1_796908_797748_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_020564.1_797755_798241_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_020564.1_798248_799688_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_020564.1_799754_800690_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_020564.1_801634_802546_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_020564.1_802542_803538_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_020564.1_803648_804593_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_020564.1_805156_805744_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_020564.1_805986_806889_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	5	852625-852706	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_020564.1_848790_849168_+,NA	NA|180aa|up_9|NC_020564.1_842860_843400_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_020564.1_843550_843871_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_020564.1_844014_844371_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_020564.1_844528_844909_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_020564.1_845809_846895_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_020564.1_846891_848784_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_020564.1_848790_849168_+	NA	NA|261aa|up_2|NC_020564.1_849318_850101_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_020564.1_850226_850958_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_020564.1_851345_852008_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_020564.1_853316_853703_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_020564.1_853695_853992_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_020564.1_854241_855267_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_020564.1_855259_855955_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_020564.1_855972_856794_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_020564.1_857147_857342_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_020564.1_857575_858427_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_020564.1_858754_859516_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_020564.1_859613_860921_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_020564.1_861026_862277_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	6	1327334-1327423	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|78aa|up_9|NC_020564.1_1316438_1316672_+,NA|33aa|up_5|NC_020564.1_1319663_1319762_+,NA|56aa|down_8|NC_020564.1_1340248_1340416_+	NA|78aa|up_9|NC_020564.1_1316438_1316672_+	NA	NA|80aa|up_8|NC_020564.1_1316808_1317048_+	pfam05979, DUF896, Bacterial protein of unknown function (DUF896)	NA|663aa|up_7|NC_020564.1_1317168_1319157_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_6|NC_020564.1_1319434_1319677_+	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown]	NA|33aa|up_5|NC_020564.1_1319663_1319762_+	NA	NA|156aa|up_4|NC_020564.1_1319855_1320323_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_3|NC_020564.1_1320446_1321568_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_2|NC_020564.1_1321571_1324601_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_020564.1_1324671_1325034_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_0|NC_020564.1_1325237_1326884_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|down_0|NC_020564.1_1327774_1330480_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|down_1|NC_020564.1_1330659_1331127_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|down_2|NC_020564.1_1331333_1331630_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|NC_020564.1_1332005_1332614_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|664aa|down_4|NC_020564.1_1332819_1334811_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_5|NC_020564.1_1334810_1337213_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|487aa|down_6|NC_020564.1_1337462_1338923_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_7|NC_020564.1_1339422_1340274_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|56aa|down_8|NC_020564.1_1340248_1340416_+	NA	NA|403aa|down_9|NC_020564.1_1340408_1341617_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	7	1597110-1597194	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1597136-1597168|1597136-1597168	NC_020564.1_801192-801224|NC_020564.1_801251-801283	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_020564.1_1586319_1587003_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_020564.1_1587246_1587423_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_020564.1_1587715_1589062_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_020564.1_1589068_1589821_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_020564.1_1589822_1590761_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_020564.1_1590764_1591904_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_020564.1_1592039_1593872_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_020564.1_1593940_1594567_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_020564.1_1594598_1595576_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_020564.1_1595676_1596801_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_020564.1_1597366_1599190_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_020564.1_1599535_1599787_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_020564.1_1599831_1600806_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_020564.1_1600862_1603064_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_020564.1_1603068_1603530_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_020564.1_1603621_1604308_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_020564.1_1604347_1605064_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_020564.1_1605066_1605420_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_020564.1_1605420_1606005_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_020564.1_1605994_1606564_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	8	2156052-2156132	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_020564.1_2151914_2152292_-,NA|35aa|down_0|NC_020564.1_2156467_2156572_-,NA|53aa|down_1|NC_020564.1_2157251_2157410_+	NA|313aa|up_9|NC_020564.1_2144629_2145568_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_020564.1_2146003_2146669_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_020564.1_2146820_2147141_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_020564.1_2147142_2148120_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_020564.1_2149074_2149737_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_020564.1_2150124_2150856_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_020564.1_2150981_2151764_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_020564.1_2151914_2152292_-	NA	NA|631aa|up_1|NC_020564.1_2152298_2154191_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_020564.1_2154187_2155273_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_020564.1_2156467_2156572_-	NA	NA|53aa|down_1|NC_020564.1_2157251_2157410_+	NA	NA|286aa|down_2|NC_020564.1_2158067_2158925_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_020564.1_2158992_2159775_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_020564.1_2160006_2161812_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_020564.1_2162492_2164031_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_020564.1_2164065_2166198_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_020564.1_2166209_2166644_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_020564.1_2166643_2167750_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_020564.1_2168068_2175514_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	9	2168373-2168458	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NC_020564.1_2156467_2156572_-,NA|53aa|up_7|NC_020564.1_2157251_2157410_+,NA	NA|362aa|up_9|NC_020564.1_2154187_2155273_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|up_8|NC_020564.1_2156467_2156572_-	NA	NA|53aa|up_7|NC_020564.1_2157251_2157410_+	NA	NA|286aa|up_6|NC_020564.1_2158067_2158925_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_020564.1_2158992_2159775_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_020564.1_2160006_2161812_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_020564.1_2162492_2164031_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_020564.1_2164065_2166198_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_020564.1_2166209_2166644_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_020564.1_2166643_2167750_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_020564.1_2175791_2177147_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_020564.1_2177173_2178106_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_020564.1_2178107_2178917_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_020564.1_2179105_2180014_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_020564.1_2186254_2187319_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NC_020564.1_2189232_2189706_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NC_020564.1_2189804_2191148_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NC_020564.1_2191324_2192008_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_020564.1_2192026_2193214_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_020564.1_2193257_2193773_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000967345.1_ASM96734v1	NC_020564	Staphylococcus aureus subsp. aureus ST228, complete genome	10	2276414-2276494	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469|2276439-2276469	NC_020564.1_808436-808466|NC_020564.1_808492-808522|NC_020564.1_808548-808578|NC_020564.1_65761-65791|NC_020564.1_363284-363254|NC_020564.1_629373-629343|NC_020564.1_808603-808633|NC_020564.1_852960-852990|NC_020564.1_1121313-1121283|NC_020564.1_1327355-1327325|NC_020564.1_1415675-1415705|NC_020564.1_1611804-1611774|NC_020564.1_1929122-1929152|NC_020564.1_2265638-2265668|NC_020564.1_2440955-2440985	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_020564.1_2266947_2267112_+,NA|106aa|up_8|NC_020564.1_2267356_2267674_+,NA|84aa|up_5|NC_020564.1_2272795_2273047_+,NA|62aa|up_0|NC_020564.1_2276186_2276372_+,NA	NA|55aa|up_9|NC_020564.1_2266947_2267112_+	NA	NA|106aa|up_8|NC_020564.1_2267356_2267674_+	NA	NA|1056aa|up_7|NC_020564.1_2267857_2271025_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_020564.1_2271141_2272407_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_020564.1_2272795_2273047_+	NA	NA|255aa|up_4|NC_020564.1_2273038_2273803_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_020564.1_2273964_2274405_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_020564.1_2274397_2275609_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_020564.1_2275710_2276061_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_020564.1_2276186_2276372_+	NA	NA|341aa|down_0|NC_020564.1_2276637_2277660_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_020564.1_2277679_2278279_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_020564.1_2278285_2278519_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_020564.1_2278524_2278971_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_020564.1_2278984_2279470_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_020564.1_2279466_2280726_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_020564.1_2280788_2281283_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_020564.1_2281284_2281791_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_020564.1_2281821_2282826_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_020564.1_2282995_2283601_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
