assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000969685.2_ASM96968v1	NC_022541	Xanthomonas citri pv. fuscans, complete genome	1	27837-28184	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	WYL	WYL,cas3,DEDDh,DinG,csa3	Unclear	NTGGAAACGGTCAACGGC,GGCGGGCTGGAAACGGTCAACGGCAGCATC,TGGAAACGGTCAACGGCTCCATC	18,30,23	0	0	NA	NA	NA:NA:NA	6,4,2	6	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|122aa|up_8|NC_022541.1_18143_18509_+,NA|92aa|down_6|NC_022541.1_37630_37906_-	WYL|242aa|up_9|NC_022541.1_17369_18095_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|122aa|up_8|NC_022541.1_18143_18509_+	NA	NA|376aa|up_7|NC_022541.1_18632_19760_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|234aa|up_6|NC_022541.1_19944_20646_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|447aa|up_5|NC_022541.1_20910_22251_-	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|231aa|up_4|NC_022541.1_22470_23163_+	pfam01694, Rhomboid, Rhomboid family	NA|107aa|up_3|NC_022541.1_23271_23592_+	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|331aa|up_2|NC_022541.1_23591_24584_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|508aa|up_1|NC_022541.1_24746_26270_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|433aa|up_0|NC_022541.1_26374_27673_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|599aa|down_0|NC_022541.1_28588_30385_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|148aa|down_1|NC_022541.1_30694_31138_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|378aa|down_2|NC_022541.1_31433_32567_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|351aa|down_3|NC_022541.1_33204_34257_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|358aa|down_4|NC_022541.1_35033_36107_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|353aa|down_5|NC_022541.1_36416_37475_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|92aa|down_6|NC_022541.1_37630_37906_-	NA	NA|494aa|down_7|NC_022541.1_38055_39537_-	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|1491aa|down_8|NC_022541.1_39658_44131_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|127aa|down_9|NC_022541.1_44333_44714_-	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family
GCF_000969685.2_ASM96968v1	NC_022541	Xanthomonas citri pv. fuscans, complete genome	2	239683-239783	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TCGGCCGAAGGGCGCACCTGCAC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|251aa|up_3|NC_022541.1_235776_236529_+,NA|206aa|up_2|NC_022541.1_236631_237249_+,NA	NA|171aa|up_9|NC_022541.1_228061_228574_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|342aa|up_8|NC_022541.1_228589_229615_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|199aa|up_7|NC_022541.1_230083_230680_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|570aa|up_6|NC_022541.1_231053_232763_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|481aa|up_5|NC_022541.1_232812_234255_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|449aa|up_4|NC_022541.1_234239_235586_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|251aa|up_3|NC_022541.1_235776_236529_+	NA	NA|206aa|up_2|NC_022541.1_236631_237249_+	NA	NA|410aa|up_1|NC_022541.1_237341_238571_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|159aa|up_0|NC_022541.1_238920_239397_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|107aa|down_0|NC_022541.1_240270_240591_+	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|339aa|down_1|NC_022541.1_240692_241709_+	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|301aa|down_2|NC_022541.1_243116_244019_+	PRK00870, PRK00870, haloalkane dehalogenase; Provisional	NA|128aa|down_3|NC_022541.1_244171_244555_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|550aa|down_4|NC_022541.1_244876_246526_+	PRK09274, PRK09274, peptide synthase; Provisional	NA|516aa|down_5|NC_022541.1_246534_248082_+	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|321aa|down_6|NC_022541.1_248281_249244_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|337aa|down_7|NC_022541.1_249652_250663_+	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|53aa|down_8|NC_022541.1_250727_250886_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|215aa|down_9|NC_022541.1_251691_252336_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000969685.2_ASM96968v1	NC_022541	Xanthomonas citri pv. fuscans, complete genome	3	3514970-3515121	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCGGCGCGCGGCGGCGCGGCTGGGACTGCGCTCGCCTCGGGCTGCTGAGGCG	52	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|203aa|up_9|NC_022541.1_3499806_3500415_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|522aa|up_8|NC_022541.1_3500422_3501988_-	cd17347, MFS_SLC15A1_2_like, Solute carrier family 15 members 1 and 2, and similar Major Facilitator Superfamily transporters	NA|590aa|up_7|NC_022541.1_3502351_3504121_+	cd06241, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|730aa|up_6|NC_022541.1_3504298_3506488_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|527aa|up_5|NC_022541.1_3506929_3508510_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|398aa|up_4|NC_022541.1_3508516_3509710_-	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|491aa|up_3|NC_022541.1_3509720_3511193_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|147aa|up_2|NC_022541.1_3511234_3511675_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|284aa|up_1|NC_022541.1_3511797_3512649_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|748aa|up_0|NC_022541.1_3512710_3514954_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|219aa|down_0|NC_022541.1_3515283_3515940_+	PRK13255, PRK13255, thiopurine S-methyltransferase; Reviewed	NA|179aa|down_1|NC_022541.1_3516206_3516743_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|713aa|down_2|NC_022541.1_3519674_3521813_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|369aa|down_3|NC_022541.1_3522204_3523311_+	pfam13229, Beta_helix, Right handed beta helix region	NA|565aa|down_4|NC_022541.1_3523378_3525073_-	PRK09431, asnB, asparagine synthetase B; Provisional	NA|377aa|down_5|NC_022541.1_3525366_3526497_-	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|119aa|down_6|NC_022541.1_3526734_3527091_-	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|401aa|down_7|NC_022541.1_3527279_3528482_-	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|870aa|down_8|NC_022541.1_3528504_3531114_-	PRK04374, PRK04374, [protein-PII] uridylyltransferase	NA|259aa|down_9|NC_022541.1_3531110_3531887_-	PRK05716, PRK05716, methionine aminopeptidase; Validated
GCF_000969685.2_ASM96968v1	NC_022542	Xanthomonas citri pv. fuscans plasmid plc, complete sequence	1	33957-34063	1	CRISPRCasFinder	no			Orphan	GCGTTCAAGGTCCGTCCGTATTAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|96aa|up_5|NC_022542.1_20248_20536_-,NA|357aa|up_3|NC_022542.1_27957_29028_-,NA|107aa|up_0|NC_022542.1_32108_32429_+,NA|91aa|down_0|NC_022542.1_34363_34636_+,NA|116aa|down_3|NC_022542.1_37377_37725_+,NA|84aa|down_4|NC_022542.1_37793_38045_+	NA|409aa|up_9|NC_022542.1_14231_15458_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|225aa|up_8|NC_022542.1_16166_16841_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|290aa|up_7|NC_022542.1_17239_18109_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|334aa|up_6|NC_022542.1_18105_19107_+	pfam09571, RE_XcyI, XcyI restriction endonuclease	NA|96aa|up_5|NC_022542.1_20248_20536_-	NA	NA|516aa|up_4|NC_022542.1_24445_25993_+	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|357aa|up_3|NC_022542.1_27957_29028_-	NA	NA|426aa|up_2|NC_022542.1_29112_30390_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|185aa|up_1|NC_022542.1_31128_31683_+	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	NA|107aa|up_0|NC_022542.1_32108_32429_+	NA	NA|91aa|down_0|NC_022542.1_34363_34636_+	NA	NA|212aa|down_1|NC_022542.1_34954_35590_+	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|190aa|down_2|NC_022542.1_35602_36172_+	COG1715, Mrr, Restriction endonuclease [Defense mechanisms]	NA|116aa|down_3|NC_022542.1_37377_37725_+	NA	NA|84aa|down_4|NC_022542.1_37793_38045_+	NA	NA|1135aa|down_5|NC_022542.1_38438_41843_+	pfam03377, TAL_effector, TAL effector repeat	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
