assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000973525.1_ASM97352v1	NZ_CP004391	Pasteurella multocida subsp. multocida OH4807, complete genome	1	1239720-1239808	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	Orphan	GGCAAATGTGGTGAAGGTAAATGCGGTGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	NA,NA|64aa|down_2|NZ_CP004391.1_1241600_1241792_-	NA|428aa|up_9|NZ_CP004391.1_1227976_1229260_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|534aa|up_8|NZ_CP004391.1_1229338_1230940_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|573aa|up_7|NZ_CP004391.1_1231129_1232848_-	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|237aa|up_6|NZ_CP004391.1_1233323_1234034_+	PRK11173, PRK11173, two-component response regulator; Provisional	NA|495aa|up_5|NZ_CP004391.1_1234103_1235588_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|161aa|up_4|NZ_CP004391.1_1235808_1236291_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|70aa|up_3|NZ_CP004391.1_1236354_1236564_-	TIGR00638, Probable_molybdenum-pterin-binding_protein, molybdenum-pterin binding domain	NA|466aa|up_2|NZ_CP004391.1_1236636_1238034_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|224aa|up_1|NZ_CP004391.1_1238017_1238689_-	PRK10336, PRK10336, two-component system response regulator QseB	NA|154aa|up_0|NZ_CP004391.1_1239019_1239481_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|307aa|down_0|NZ_CP004391.1_1239876_1240797_+	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_1|NZ_CP004391.1_1240786_1241503_+	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|64aa|down_2|NZ_CP004391.1_1241600_1241792_-	NA	NA|185aa|down_3|NZ_CP004391.1_1241792_1242347_-	PRK12530, PRK12530, RNA polymerase sigma factor; Provisional	NA|116aa|down_4|NZ_CP004391.1_1242592_1242940_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|654aa|down_5|NZ_CP004391.1_1243217_1245179_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|201aa|down_6|NZ_CP004391.1_1245188_1245791_-	COG0353, RecR, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]	NA|110aa|down_7|NZ_CP004391.1_1246048_1246378_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|869aa|down_8|NZ_CP004391.1_1246600_1249207_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|362aa|down_9|NZ_CP004391.1_1249311_1250397_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain
GCF_000973525.1_ASM97352v1	NZ_CP004391	Pasteurella multocida subsp. multocida OH4807, complete genome	2	1637373-1638420	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3f,cas1,cas3,cas6f,cas7f,cas5f,cas8f	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	Type I-F	TTTCTAAGCTGCCTATACGGCAGTGATG,TTTCTAAGCTGCCTATACGGCAGTGATG,TTTCTAAGCTGCCTATACGGCAGTGATG	28,28,28	5	5	1637821-1637852|1638121-1638152|1638181-1638212|1638301-1638332|1638361-1638392	NZ_CP004391.1_870747-870716|NZ_CP004391.1_902373-902404|NZ_CP004391.1_908298-908267|NZ_CP004391.1_907106-907137|NZ_CP004391.1_901171-901202	I-F:I-F:I-F	17,17,15	17	TypeI-F	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	NA,NA	cas3f|1117aa|up_9|NZ_CP004391.1_1623489_1626840_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|up_8|NZ_CP004391.1_1626820_1627801_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|229aa|up_7|NZ_CP004391.1_1628037_1628724_-	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism]	NA|968aa|up_6|NZ_CP004391.1_1628966_1631870_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_5|NZ_CP004391.1_1632148_1632808_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|190aa|up_4|NZ_CP004391.1_1632870_1633440_+	pfam04220, YihI, Der GTPase activator (YihI)	NA|145aa|up_3|NZ_CP004391.1_1633445_1633880_+	pfam10675, DUF2489, Protein of unknown function (DUF2489)	NA|456aa|up_2|NZ_CP004391.1_1633901_1635269_+	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|223aa|up_1|NZ_CP004391.1_1635335_1636004_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|372aa|up_0|NZ_CP004391.1_1636139_1637255_+	pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase	cas3|444aa|down_0|NZ_CP004391.1_1638563_1639895_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|238aa|down_1|NZ_CP004391.1_1640004_1640718_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	cas6f|187aa|down_2|NZ_CP004391.1_1642232_1642793_-	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	cas7f|335aa|down_3|NZ_CP004391.1_1642795_1643800_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|329aa|down_4|NZ_CP004391.1_1643799_1644786_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|439aa|down_5|NZ_CP004391.1_1644794_1646111_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	NA|861aa|down_6|NZ_CP004391.1_1646388_1648971_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|353aa|down_7|NZ_CP004391.1_1649204_1650263_+	PRK09354, recA, recombinase A; Provisional	NA|152aa|down_8|NZ_CP004391.1_1650363_1650819_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|425aa|down_9|NZ_CP004391.1_1650876_1652151_-	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
GCF_000973525.1_ASM97352v1	NZ_CP004391	Pasteurella multocida subsp. multocida OH4807, complete genome	3	1640745-1642092	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3f,cas1,cas3,cas6f,cas7f,cas5f,cas8f	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	Type I-F	TTTCTAAGCCATCTATACGATGGTTAAC,TTTCTAAGCCATCTATACGATGGTTAAC,TTTCTAAGCCATCTATACGATGGTTAAC	28,28,28	4	4	1641013-1641044|1641073-1641104|1641313-1641344|1641553-1641584	NZ_CP004391.1_909193-909224|NZ_CP004391.1_902860-902891|NZ_CP004391.1_908252-908283|NZ_CP004391.1_907246-907277	NA:NA:NA	22,22,21	22	TypeI-F	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	NA,NA	NA|229aa|up_9|NZ_CP004391.1_1628037_1628724_-	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism]	NA|968aa|up_8|NZ_CP004391.1_1628966_1631870_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_7|NZ_CP004391.1_1632148_1632808_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|190aa|up_6|NZ_CP004391.1_1632870_1633440_+	pfam04220, YihI, Der GTPase activator (YihI)	NA|145aa|up_5|NZ_CP004391.1_1633445_1633880_+	pfam10675, DUF2489, Protein of unknown function (DUF2489)	NA|456aa|up_4|NZ_CP004391.1_1633901_1635269_+	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|223aa|up_3|NZ_CP004391.1_1635335_1636004_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|372aa|up_2|NZ_CP004391.1_1636139_1637255_+	pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase	cas3|444aa|up_1|NZ_CP004391.1_1638563_1639895_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|238aa|up_0|NZ_CP004391.1_1640004_1640718_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	cas6f|187aa|down_0|NZ_CP004391.1_1642232_1642793_-	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	cas7f|335aa|down_1|NZ_CP004391.1_1642795_1643800_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|329aa|down_2|NZ_CP004391.1_1643799_1644786_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|439aa|down_3|NZ_CP004391.1_1644794_1646111_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	NA|861aa|down_4|NZ_CP004391.1_1646388_1648971_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|353aa|down_5|NZ_CP004391.1_1649204_1650263_+	PRK09354, recA, recombinase A; Provisional	NA|152aa|down_6|NZ_CP004391.1_1650363_1650819_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|425aa|down_7|NZ_CP004391.1_1650876_1652151_-	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]	NA|467aa|down_8|NZ_CP004391.1_1652163_1653564_-	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase	NA|248aa|down_9|NZ_CP004391.1_1653604_1654348_-	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed
GCF_000973525.1_ASM97352v1	NZ_CP004391	Pasteurella multocida subsp. multocida OH4807, complete genome	4	1949562-1949703	4	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	Unclear	TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	NA,NA	NA|563aa|up_9|NZ_CP004391.1_1937586_1939275_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|469aa|up_8|NZ_CP004391.1_1939442_1940849_+	COG3106, COG3106, Predicted ATPase [General function prediction only]	NA|362aa|up_7|NZ_CP004391.1_1940868_1941954_+	PRK05415, PRK05415, hypothetical protein; Provisional	NA|318aa|up_6|NZ_CP004391.1_1942042_1942996_+	COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]	NA|459aa|up_5|NZ_CP004391.1_1943049_1944426_-	PRK11058, PRK11058, GTPase HflX; Provisional	NA|97aa|up_4|NZ_CP004391.1_1944440_1944731_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|319aa|up_3|NZ_CP004391.1_1944838_1945795_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|620aa|up_2|NZ_CP004391.1_1945799_1947659_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|416aa|up_1|NZ_CP004391.1_1947664_1948912_-	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|165aa|up_0|NZ_CP004391.1_1948916_1949411_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	DEDDh|185aa|down_0|NZ_CP004391.1_1949849_1950404_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|351aa|down_1|NZ_CP004391.1_1950485_1951538_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|86aa|down_2|NZ_CP004391.1_1951765_1952023_+	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|576aa|down_3|NZ_CP004391.1_1952115_1953843_+	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI	NA|167aa|down_4|NZ_CP004391.1_1953901_1954402_+	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|888aa|down_5|NZ_CP004391.1_1954894_1957558_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|627aa|down_6|NZ_CP004391.1_1957627_1959508_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|474aa|down_7|NZ_CP004391.1_1959624_1961046_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|150aa|down_8|NZ_CP004391.1_1961214_1961664_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|414aa|down_9|NZ_CP004391.1_1962029_1963271_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional
GCF_000973525.1_ASM97352v1	NZ_CP004391	Pasteurella multocida subsp. multocida OH4807, complete genome	5	2052069-2052277	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	Orphan	TTTCTAAGCCATCTATACGATGTTGAAC,GTTCAACATCGTATAGATGGCTTAGAAAT,GTTCAACATCGTATAGATGGCTTAGAAA	28,29,28	2	2	2052157-2052188|2052158-2052188	NZ_CP004391.1_904262-904231|NZ_CP004391.1_904261-904231	NA:NA:NA	3,3,3	3	Orphan	DEDDh,DinG,cas3,cas3f,cas1,cas6f,cas7f,cas5f,cas8f,WYL,csa3	NA|179aa|up_6|NZ_CP004391.1_2045265_2045802_-,NA|65aa|up_5|NZ_CP004391.1_2045788_2045983_-,NA	NA|445aa|up_9|NZ_CP004391.1_2039892_2041227_+	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|153aa|up_8|NZ_CP004391.1_2041290_2041749_+	TIGR00249, Phosphohistidine_phosphatase_SixA_homolog, phosphohistidine phosphatase SixA	NA|565aa|up_7|NZ_CP004391.1_2043372_2045067_-	COG5293, COG5293, Predicted ATPase [General function prediction only]	NA|179aa|up_6|NZ_CP004391.1_2045265_2045802_-	NA	NA|65aa|up_5|NZ_CP004391.1_2045788_2045983_-	NA	NA|226aa|up_4|NZ_CP004391.1_2046084_2046762_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|66aa|up_3|NZ_CP004391.1_2046886_2047084_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|298aa|up_2|NZ_CP004391.1_2048489_2049383_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|324aa|up_1|NZ_CP004391.1_2049798_2050770_-	pfam10546, P63C, P63C domain	NA|281aa|up_0|NZ_CP004391.1_2051140_2051983_+	pfam10547, P22_AR_N, P22_AR N-terminal domain	NA|240aa|down_0|NZ_CP004391.1_2052556_2053276_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|224aa|down_1|NZ_CP004391.1_2053338_2054010_-	COG0850, MinC, Septum formation inhibitor [Cell division and chromosome partitioning]	NA|84aa|down_2|NZ_CP004391.1_2054103_2054355_+	COG3100, COG3100, Uncharacterized protein conserved in bacteria [Function unknown]	NA|131aa|down_3|NZ_CP004391.1_2054340_2054733_-	pfam03013, Pyr_excise, Pyrimidine dimer DNA glycosylase	NA|102aa|down_4|NZ_CP004391.1_2054788_2055094_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|176aa|down_5|NZ_CP004391.1_2055097_2055625_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|224aa|down_6|NZ_CP004391.1_2055587_2056259_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|381aa|down_7|NZ_CP004391.1_2056328_2057471_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|441aa|down_8|NZ_CP004391.1_2057457_2058780_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|466aa|down_9|NZ_CP004391.1_2058779_2060177_-	COG4393, COG4393, Predicted membrane protein [Function unknown]
