assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	1	468555-469376	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|47aa|up_1|NZ_CP011331.1_467264_467405_-,NA	NA|919aa|up_9|NZ_CP011331.1_455148_457905_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP011331.1_457961_459263_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP011331.1_459310_461545_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP011331.1_461622_461871_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP011331.1_461870_462206_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP011331.1_462276_463068_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP011331.1_463295_464933_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP011331.1_465020_466319_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP011331.1_467264_467405_-	NA	NA|224aa|up_0|NZ_CP011331.1_467543_468215_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP011331.1_470014_471493_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP011331.1_471519_472797_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP011331.1_473115_473901_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP011331.1_473970_475425_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP011331.1_475446_476856_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP011331.1_476833_477613_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP011331.1_477576_478470_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP011331.1_478617_479193_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP011331.1_479209_479470_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP011331.1_479460_480732_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	2	496425-496514	2	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	1	1	TypeI-E	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|51aa|up_9|NZ_CP011331.1_486074_486227_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP011331.1_486303_487416_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP011331.1_487769_490469_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP011331.1_490566_492129_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP011331.1_492125_492662_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP011331.1_492673_493729_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP011331.1_493739_494486_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP011331.1_494467_495118_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP011331.1_495114_496035_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP011331.1_496034_496328_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP011331.1_496595_497633_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP011331.1_497884_498793_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP011331.1_498794_500222_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP011331.1_500221_500827_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP011331.1_500876_501200_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP011331.1_501393_501705_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP011331.1_501723_502434_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP011331.1_502433_502913_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP011331.1_502909_503959_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP011331.1_503939_504701_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	3	1750719-1750842	3	CRISPRCasFinder	no	DEDDh	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA|30aa|down_7|NZ_CP011331.1_1759738_1759828_+	NA|471aa|up_9|NZ_CP011331.1_1740172_1741585_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP011331.1_1742141_1742351_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP011331.1_1742806_1743433_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP011331.1_1743453_1745556_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP011331.1_1745568_1746207_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP011331.1_1746270_1746939_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP011331.1_1746935_1747721_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP011331.1_1747724_1748537_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP011331.1_1748548_1750153_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP011331.1_1750278_1750584_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP011331.1_1751156_1752413_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP011331.1_1752453_1753827_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP011331.1_1754041_1754683_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP011331.1_1754722_1755871_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP011331.1_1756161_1757373_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP011331.1_1757485_1758418_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP011331.1_1758414_1759440_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP011331.1_1759738_1759828_+	NA	NA|390aa|down_8|NZ_CP011331.1_1759993_1761163_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP011331.1_1761308_1761890_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	4	2563753-2563844	4	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|70aa|up_9|NZ_CP011331.1_2553003_2553213_-,NA|422aa|down_1|NZ_CP011331.1_2573277_2574543_-,NA|149aa|down_3|NZ_CP011331.1_2574814_2575261_-,NA|219aa|down_4|NZ_CP011331.1_2575263_2575920_-,NA|134aa|down_5|NZ_CP011331.1_2576013_2576415_-,NA|206aa|down_8|NZ_CP011331.1_2577669_2578287_-,NA|93aa|down_9|NZ_CP011331.1_2578292_2578571_-	NA|70aa|up_9|NZ_CP011331.1_2553003_2553213_-	NA	NA|1321aa|up_8|NZ_CP011331.1_2553267_2557230_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP011331.1_2557269_2557908_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP011331.1_2558195_2559287_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP011331.1_2559286_2559979_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP011331.1_2559990_2560377_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP011331.1_2560384_2561185_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP011331.1_2561194_2561785_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP011331.1_2561795_2562290_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP011331.1_2562310_2563639_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|2794aa|down_0|NZ_CP011331.1_2564826_2573208_-	pfam18799, LPD5, Large polyvalent protein-associated domain 5	NA|422aa|down_1|NZ_CP011331.1_2573277_2574543_-	NA	NA|84aa|down_2|NZ_CP011331.1_2574553_2574805_-	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein	NA|149aa|down_3|NZ_CP011331.1_2574814_2575261_-	NA	NA|219aa|down_4|NZ_CP011331.1_2575263_2575920_-	NA	NA|134aa|down_5|NZ_CP011331.1_2576013_2576415_-	NA	NA|47aa|down_6|NZ_CP011331.1_2576471_2576612_-	PRK09759, PRK09759, type I toxin-antitoxin system toxin HokA	NA|245aa|down_7|NZ_CP011331.1_2576844_2577579_-	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|206aa|down_8|NZ_CP011331.1_2577669_2578287_-	NA	NA|93aa|down_9|NZ_CP011331.1_2578292_2578571_-	NA
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	5	2923283-2923396	2	PILER-CR	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|47aa|up_9|NZ_CP011331.1_2918002_2918143_-,NA|34aa|up_5|NZ_CP011331.1_2919402_2919504_-,NA|170aa|up_4|NZ_CP011331.1_2919600_2920110_-,NA|101aa|up_1|NZ_CP011331.1_2921819_2922122_-,NA|94aa|down_9|NZ_CP011331.1_2928464_2928746_+	NA|47aa|up_9|NZ_CP011331.1_2918002_2918143_-	NA	NA|97aa|up_8|NZ_CP011331.1_2918497_2918788_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_7|NZ_CP011331.1_2918780_2918951_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_6|NZ_CP011331.1_2918950_2919406_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_5|NZ_CP011331.1_2919402_2919504_-	NA	NA|170aa|up_4|NZ_CP011331.1_2919600_2920110_-	NA	NA|80aa|up_3|NZ_CP011331.1_2920428_2920668_-	pfam10548, P22_AR_C, P22AR C-terminal domain	NA|265aa|up_2|NZ_CP011331.1_2920779_2921574_-	pfam13408, Zn_ribbon_recom, Recombinase zinc beta ribbon domain	NA|101aa|up_1|NZ_CP011331.1_2921819_2922122_-	NA	NA|234aa|up_0|NZ_CP011331.1_2922118_2922820_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP011331.1_2923832_2924372_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP011331.1_2924441_2924672_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP011331.1_2924777_2925467_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP011331.1_2926064_2926271_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP011331.1_2926346_2926643_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP011331.1_2926648_2927434_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP011331.1_2927430_2928111_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP011331.1_2928107_2928290_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP011331.1_2928262_2928454_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP011331.1_2928464_2928746_+	NA
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	6	2933079-2933223	5	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|94aa|up_6|NZ_CP011331.1_2928464_2928746_+,NA|201aa|up_4|NZ_CP011331.1_2929276_2929879_-,NA|56aa|up_3|NZ_CP011331.1_2930121_2930289_+,NA	NA|227aa|up_9|NZ_CP011331.1_2927430_2928111_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP011331.1_2928107_2928290_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP011331.1_2928262_2928454_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_CP011331.1_2928464_2928746_+	NA	NA|74aa|up_5|NZ_CP011331.1_2928844_2929066_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_CP011331.1_2929276_2929879_-	NA	NA|56aa|up_3|NZ_CP011331.1_2930121_2930289_+	NA	NA|73aa|up_2|NZ_CP011331.1_2930328_2930547_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP011331.1_2930524_2931595_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP011331.1_2931729_2933013_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP011331.1_2933246_2935508_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP011331.1_2935690_2937124_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP011331.1_2937199_2938252_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP011331.1_2938435_2939389_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP011331.1_2939429_2940425_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP011331.1_2940579_2941398_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP011331.1_2941398_2942457_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP011331.1_2942459_2943149_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP011331.1_2943148_2943922_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP011331.1_2944088_2944238_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	7	3172375-3172471	6	CRISPRCasFinder	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|231aa|up_9|NZ_CP011331.1_3164160_3164853_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP011331.1_3165072_3165615_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP011331.1_3166095_3166962_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP011331.1_3166963_3167176_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP011331.1_3167283_3167805_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP011331.1_3167840_3169226_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP011331.1_3169399_3169894_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP011331.1_3169896_3170619_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP011331.1_3170736_3171246_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP011331.1_3171242_3172310_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP011331.1_3172504_3173398_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP011331.1_3173394_3174210_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP011331.1_3174220_3175480_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP011331.1_3175489_3177157_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP011331.1_3177473_3178523_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP011331.1_3178544_3179780_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP011331.1_3179790_3180576_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP011331.1_3180704_3181850_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP011331.1_3181871_3183173_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP011331.1_3183229_3184591_-	PRK08044, PRK08044, allantoinase AllB
GCF_000986765.1_ASM98676v1	NZ_CP011331	Escherichia coli O104:H4 str. C227-11 isolate 368 shch chromosome, complete genome	8	3713569-3713701	3	PILER-CR	no		RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|126aa|up_9|NZ_CP011331.1_3704272_3704650_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP011331.1_3704656_3705499_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP011331.1_3705576_3706056_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP011331.1_3706247_3708110_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP011331.1_3708102_3708633_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP011331.1_3708740_3710072_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP011331.1_3710130_3710418_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP011331.1_3710414_3711701_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP011331.1_3711751_3712693_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP011331.1_3712707_3713478_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP011331.1_3713951_3715466_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP011331.1_3715496_3716639_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP011331.1_3716767_3717985_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP011331.1_3718058_3719612_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP011331.1_3719720_3720506_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP011331.1_3720511_3721102_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP011331.1_3721187_3721583_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP011331.1_3721843_3725065_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP011331.1_3725082_3726231_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP011331.1_3726686_3727508_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
