assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000987835.1_ASM98783v1	NZ_CP011308	Sulfurovum lithotrophicum strain ATCC BAA-797 chromosome, complete genome	1	132944-133066	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	Orphan	CGTTAAGAAAACGTGAACTGCTTCACGTTTTTAGCGTCG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	NA|500aa|up_8|NZ_CP011308.1_121770_123270_+,NA|453aa|up_5|NZ_CP011308.1_125955_127314_-,NA	NA|279aa|up_9|NZ_CP011308.1_120871_121708_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|500aa|up_8|NZ_CP011308.1_121770_123270_+	NA	NA|329aa|up_7|NZ_CP011308.1_123293_124280_-	pfam01171, ATP_bind_3, PP-loop family	NA|441aa|up_6|NZ_CP011308.1_124427_125750_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|453aa|up_5|NZ_CP011308.1_125955_127314_-	NA	NA|427aa|up_4|NZ_CP011308.1_127794_129075_-	PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	NA|353aa|up_3|NZ_CP011308.1_129076_130135_-	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|495aa|up_2|NZ_CP011308.1_130202_131687_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|115aa|up_1|NZ_CP011308.1_131770_132115_+	cd07316, terB_like_DjlA, N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins	NA|248aa|up_0|NZ_CP011308.1_132195_132939_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|220aa|down_0|NZ_CP011308.1_133076_133736_-	pfam06695, Sm_multidrug_ex, Putative small multi-drug export protein	NA|217aa|down_1|NZ_CP011308.1_133940_134591_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|287aa|down_2|NZ_CP011308.1_134597_135458_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|429aa|down_3|NZ_CP011308.1_135518_136805_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|426aa|down_4|NZ_CP011308.1_136814_138092_-	pfam13194, DUF4010, Domain of unknown function (DUF4010)	NA|1323aa|down_5|NZ_CP011308.1_138095_142064_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|467aa|down_6|NZ_CP011308.1_142183_143584_+	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|241aa|down_7|NZ_CP011308.1_143700_144423_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|671aa|down_8|NZ_CP011308.1_144519_146532_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|867aa|down_9|NZ_CP011308.1_146793_149394_+	TIGR04246, nitrous_NosZ_Gp, nitrous-oxide reductase, Sec-dependent
GCF_000987835.1_ASM98783v1	NZ_CP011308	Sulfurovum lithotrophicum strain ATCC BAA-797 chromosome, complete genome	2	995263-996939	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,WYL,cas9,cas1,cas2	cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	Type II-B,Type II-C,Type II-A	GTTTTAAGACCCCTCCAAACCGCCACCTGTTATAAT,GTTTTAAGACCCCTCCAAACCGCCACCTGTTATAAT,GTTTTAAGACCCCTCCAAACCGCCACCTGTTATAAT	36,36,36	0	0	NA	NA	NA:NA:NA	24,23,15	24	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	NA|278aa|up_7|NZ_CP011308.1_985895_986729_+,NA|434aa|down_4|NZ_CP011308.1_1002222_1003524_+,NA|109aa|down_9|NZ_CP011308.1_1006099_1006426_+	DEDDh|245aa|up_9|NZ_CP011308.1_984590_985325_-	PRK07983, PRK07983, exodeoxyribonuclease X; Provisional	NA|153aa|up_8|NZ_CP011308.1_985435_985894_+	cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins	NA|278aa|up_7|NZ_CP011308.1_985895_986729_+	NA	NA|272aa|up_6|NZ_CP011308.1_986721_987537_+	PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional	NA|303aa|up_5|NZ_CP011308.1_987552_988461_+	cd18773, PDC1_HK_sensor, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins, diguanylate-cyclase and similar domains	NA|208aa|up_4|NZ_CP011308.1_988469_989093_+	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	WYL|301aa|up_3|NZ_CP011308.1_989538_990441_+	pfam13280, WYL, WYL domain	cas9|1144aa|up_2|NZ_CP011308.1_990546_993978_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|306aa|up_1|NZ_CP011308.1_993946_994864_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|111aa|up_0|NZ_CP011308.1_994850_995183_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|687aa|down_0|NZ_CP011308.1_997339_999400_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|373aa|down_1|NZ_CP011308.1_999488_1000607_-	pfam10442, FIST_C, FIST C domain	NA|183aa|down_2|NZ_CP011308.1_1000857_1001406_-	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|210aa|down_3|NZ_CP011308.1_1001407_1002037_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|434aa|down_4|NZ_CP011308.1_1002222_1003524_+	NA	NA|141aa|down_5|NZ_CP011308.1_1003698_1004121_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|105aa|down_6|NZ_CP011308.1_1004117_1004432_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|193aa|down_7|NZ_CP011308.1_1004428_1005007_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|192aa|down_8|NZ_CP011308.1_1005297_1005873_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|109aa|down_9|NZ_CP011308.1_1006099_1006426_+	NA
GCF_000987835.1_ASM98783v1	NZ_CP011308	Sulfurovum lithotrophicum strain ATCC BAA-797 chromosome, complete genome	3	1441628-1441722	3	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	Orphan	GTGATAGTGGATTGTGATAGTGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	NA|356aa|up_4|NZ_CP011308.1_1435944_1437012_-,NA|79aa|down_2|NZ_CP011308.1_1445175_1445412_-	NA|209aa|up_9|NZ_CP011308.1_1431482_1432109_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|319aa|up_8|NZ_CP011308.1_1432092_1433049_-	PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional	NA|202aa|up_7|NZ_CP011308.1_1433038_1433644_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|376aa|up_6|NZ_CP011308.1_1433656_1434784_-	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|367aa|up_5|NZ_CP011308.1_1434847_1435948_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|356aa|up_4|NZ_CP011308.1_1435944_1437012_-	NA	NA|423aa|up_3|NZ_CP011308.1_1437125_1438394_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|385aa|up_2|NZ_CP011308.1_1438390_1439545_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|398aa|up_1|NZ_CP011308.1_1439541_1440735_-	cd05151, ChoK-like, Choline Kinase and similar proteins	NA|217aa|up_0|NZ_CP011308.1_1440731_1441382_-	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|384aa|down_0|NZ_CP011308.1_1442615_1443767_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|468aa|down_1|NZ_CP011308.1_1443767_1445171_-	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA|79aa|down_2|NZ_CP011308.1_1445175_1445412_-	NA	NA|253aa|down_3|NZ_CP011308.1_1445706_1446465_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|244aa|down_4|NZ_CP011308.1_1446500_1447232_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|771aa|down_5|NZ_CP011308.1_1447231_1449544_-	PRK09841, PRK09841, tyrosine-protein kinase	NA|125aa|down_6|NZ_CP011308.1_1449942_1450317_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|293aa|down_7|NZ_CP011308.1_1450326_1451205_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional	NA|259aa|down_8|NZ_CP011308.1_1451589_1452366_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|511aa|down_9|NZ_CP011308.1_1452426_1453959_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
GCF_000987835.1_ASM98783v1	NZ_CP011308	Sulfurovum lithotrophicum strain ATCC BAA-797 chromosome, complete genome	4	1693884-1693972	4	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	Orphan	AACGACTCTACAAAAACGATCTC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	NA|97aa|up_4|NZ_CP011308.1_1689442_1689733_-,NA|141aa|up_0|NZ_CP011308.1_1692325_1692748_-,NA	NA|315aa|up_9|NZ_CP011308.1_1680047_1680992_-	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins	NA|321aa|up_8|NZ_CP011308.1_1680996_1681959_-	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins	NA|728aa|up_7|NZ_CP011308.1_1682239_1684423_-	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|350aa|up_6|NZ_CP011308.1_1684580_1685630_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|1189aa|up_5|NZ_CP011308.1_1685747_1689314_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|97aa|up_4|NZ_CP011308.1_1689442_1689733_-	NA	NA|187aa|up_3|NZ_CP011308.1_1689833_1690394_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|318aa|up_2|NZ_CP011308.1_1690395_1691349_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	NA|267aa|up_1|NZ_CP011308.1_1691427_1692228_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|141aa|up_0|NZ_CP011308.1_1692325_1692748_-	NA	NA|696aa|down_0|NZ_CP011308.1_1694169_1696257_+	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|189aa|down_1|NZ_CP011308.1_1696371_1696938_-	PRK00529, PRK00529, elongation factor P; Validated	NA|575aa|down_2|NZ_CP011308.1_1697048_1698773_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|543aa|down_3|NZ_CP011308.1_1698772_1700401_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|265aa|down_4|NZ_CP011308.1_1700407_1701202_-	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion	NA|473aa|down_5|NZ_CP011308.1_1701198_1702617_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|530aa|down_6|NZ_CP011308.1_1702823_1704413_-	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|553aa|down_7|NZ_CP011308.1_1704497_1706156_-	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|428aa|down_8|NZ_CP011308.1_1706342_1707626_-	PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase	NA|278aa|down_9|NZ_CP011308.1_1707636_1708470_-	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
GCF_000987835.1_ASM98783v1	NZ_CP011308	Sulfurovum lithotrophicum strain ATCC BAA-797 chromosome, complete genome	5	1813989-1814122	5	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	Orphan	GGTGAATAAGATGTGAACAACTCATATTAATTAATGCAACGCG	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,csa3	NA|292aa|up_9|NZ_CP011308.1_1799799_1800675_-,NA	NA|292aa|up_9|NZ_CP011308.1_1799799_1800675_-	NA	NA|502aa|up_8|NZ_CP011308.1_1800671_1802177_-	COG4938, COG4938, Uncharacterized conserved protein [Function unknown]	NA|437aa|up_7|NZ_CP011308.1_1802517_1803828_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|1031aa|up_6|NZ_CP011308.1_1804264_1807357_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|256aa|up_5|NZ_CP011308.1_1807504_1808272_+	COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]	NA|469aa|up_4|NZ_CP011308.1_1808275_1809682_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|266aa|up_3|NZ_CP011308.1_1809685_1810483_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|218aa|up_2|NZ_CP011308.1_1810564_1811218_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|397aa|up_1|NZ_CP011308.1_1811210_1812401_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|450aa|up_0|NZ_CP011308.1_1812509_1813859_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|236aa|down_0|NZ_CP011308.1_1814148_1814856_-	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase	NA|608aa|down_1|NZ_CP011308.1_1815018_1816842_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|269aa|down_2|NZ_CP011308.1_1816838_1817645_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|238aa|down_3|NZ_CP011308.1_1817677_1818391_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|649aa|down_4|NZ_CP011308.1_1818387_1820334_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|380aa|down_5|NZ_CP011308.1_1820601_1821741_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|206aa|down_6|NZ_CP011308.1_1821967_1822585_-	PRK08485, PRK08485, DNA polymerase III subunit delta'; Validated	NA|182aa|down_7|NZ_CP011308.1_1822587_1823133_-	pfam12163, HobA, DNA replication regulator	NA|402aa|down_8|NZ_CP011308.1_1823139_1824345_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|158aa|down_9|NZ_CP011308.1_1824399_1824873_-	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed
