The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011397	Listeria monocytogenes strain CFSAN007956 chromosome, complete genome	2918170	125905	132430	2918170	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|125905_126358_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|126363_126699_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|126915_127344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003735200.1|127355_127772_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.7e-20
WP_045598082.1|128049_128439_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003721744.1|128451_128964_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|129011_129314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072217178.1|129355_129760_+	phenylalanine racemase	NA	NA	NA	NA	NA
WP_031665466.1|129746_131615_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|131611_132430_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP011397	Listeria monocytogenes strain CFSAN007956 chromosome, complete genome	2918170	1111101	1120059	2918170		Hokovirus(28.57%)	9	NA	NA
WP_003721506.1|1111101_1111485_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_003732709.1|1111506_1112490_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_045599224.1|1112504_1113518_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	31.2	2.3e-10
WP_003721509.1|1113726_1115217_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_014601905.1|1115228_1116053_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	1.3e-67
WP_003721511.1|1116065_1116374_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003721512.1|1116433_1116838_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_014601906.1|1116966_1118523_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	3.9e-17
WP_014601907.1|1118655_1120059_+	SIR2 family protein	NA	Q38324	Lactococcus_phage	25.7	1.2e-17
>prophage 3
NZ_CP011397	Listeria monocytogenes strain CFSAN007956 chromosome, complete genome	2918170	1206735	1312478	2918170	tRNA,protease,integrase,tail,holin,capsid,terminase,portal	Listeria_phage(70.59%)	119	1212123:1212140	1276655:1276672
WP_003732769.1|1206735_1209144_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_026749898.1|1209304_1210006_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	3.9e-33
WP_031644433.1|1210019_1213430_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
1212123:1212140	attL	AGCTTACTTGCTTTATTT	NA	NA	NA	NA
WP_003721623.1|1213527_1213980_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031644434.1|1213995_1217196_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_003721625.1|1217302_1217977_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	1.7e-49
WP_072215733.1|1218013_1218940_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_003740576.1|1219093_1219357_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003723849.1|1219356_1219899_+	CvpA family protein	NA	NA	NA	NA	NA
WP_010989712.1|1219991_1221704_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	5.1e-18
WP_010989713.1|1221726_1224084_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
WP_003723853.1|1224164_1224476_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
WP_003732777.1|1224551_1226363_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003732778.1|1226551_1227766_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003733801.1|1227821_1228316_-	YslB family protein	NA	NA	NA	NA	NA
WP_003723856.1|1228463_1229264_+	glutamate racemase	NA	NA	NA	NA	NA
WP_003732780.1|1229276_1230023_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_012581486.1|1230026_1230638_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_012951515.1|1230674_1231199_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_026749902.1|1231484_1232639_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	97.1	4.1e-213
WP_012951517.1|1232782_1233439_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_026749903.1|1233490_1233943_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	96.0	8.5e-82
WP_026749904.1|1233959_1234283_-	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	71.0	8.5e-36
WP_009929535.1|1235087_1235411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009929536.1|1235425_1235629_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	100.0	3.1e-28
WP_015987310.1|1235630_1235873_+	hypothetical protein	NA	A8ATD2	Listeria_phage	100.0	1.4e-43
WP_009929539.1|1235875_1236061_+	hypothetical protein	NA	A0A059T7Z3	Listeria_phage	96.7	1.7e-28
WP_009931096.1|1236295_1236448_+	hypothetical protein	NA	A0A059T7S2	Listeria_phage	98.0	3.4e-19
WP_026749905.1|1236584_1236839_+	hypothetical protein	NA	A0A059T6G3	Listeria_phage	91.5	4.3e-35
WP_031664911.1|1236856_1237834_+	DNA cytosine methyltransferase	NA	H7BVD3	unidentified_phage	37.5	9.2e-49
WP_031664910.1|1237830_1238424_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	61.7	3.1e-60
WP_031664908.1|1238426_1238870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014929526.1|1238866_1239013_+	hypothetical protein	NA	A8ATZ0	Listeria_phage	100.0	1.7e-20
WP_031664906.1|1239250_1239784_+	pentapeptide repeat-containing protein	NA	A0A060AFJ6	Listeria_phage	85.2	2.2e-44
WP_031664904.1|1239887_1240103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731703.1|1240099_1240276_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	87.9	1.9e-21
WP_014930899.1|1240665_1240893_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	84.0	4.6e-28
WP_031664899.1|1241208_1241424_+	hypothetical protein	NA	A0A059T7T1	Listeria_phage	93.7	2.8e-27
WP_031664897.1|1241473_1242034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009933642.1|1242137_1242311_+	hypothetical protein	NA	A0A059T5G3	Listeria_phage	100.0	5.2e-24
WP_014929534.1|1242307_1242691_+	hypothetical protein	NA	A0A059T6A2	Listeria_phage	99.2	5.5e-66
WP_033920325.1|1242692_1243172_+	siphovirus Gp157 family protein	NA	A0A059T803	Listeria_phage	98.7	1.2e-78
WP_003743935.1|1243184_1243874_+	AAA family ATPase	NA	A0A059T7T3	Listeria_phage	100.0	2.6e-130
WP_026749915.1|1243937_1245194_+	DEAD/DEAH box helicase	NA	Q8W5V9	Listeria_phage	90.0	5.4e-219
WP_026749916.1|1245217_1245715_+	DUF669 domain-containing protein	NA	A0A059T5G4	Listeria_phage	57.3	3.2e-50
WP_046810882.1|1245734_1248008_+	DNA primase	NA	R4IBW2	Listeria_phage	74.3	0.0e+00
WP_031664889.1|1248148_1248469_+	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	97.2	1.2e-53
WP_033920321.1|1248465_1248735_+	hypothetical protein	NA	W0GBM0	Listeria_phage	72.2	3.1e-15
WP_031664887.1|1248845_1249376_+	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	77.3	1.3e-73
WP_031664885.1|1249376_1249802_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	99.3	1.8e-73
WP_031664882.1|1250028_1250970_+	DUF4868 domain-containing protein	NA	A0A1Q1PW39	Staphylococcus_phage	33.0	5.9e-45
WP_031664880.1|1250995_1251607_+	hypothetical protein	NA	A0A1Q1PW40	Staphylococcus_phage	42.8	6.0e-22
WP_031664879.1|1251636_1251963_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	93.5	9.5e-51
WP_031664877.1|1251962_1252277_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	97.1	3.2e-56
WP_012951543.1|1252325_1252682_+|terminase	P27 family phage terminase small subunit	terminase	A0A059T7Y1	Listeria_phage	98.0	2.0e-46
WP_026749921.1|1252678_1254322_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	99.6	0.0e+00
WP_009917707.1|1254331_1254721_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	3.7e-17
WP_026749922.1|1254771_1255902_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	99.2	6.1e-214
WP_026749923.1|1255898_1256696_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	99.6	6.2e-144
WP_014930913.1|1256722_1257874_+|capsid	phage major capsid protein	capsid	A0A059T678	Listeria_phage	100.0	6.3e-214
WP_167620291.1|1257880_1258051_+	hypothetical protein	NA	A0A059T7Y2	Listeria_phage	98.2	2.4e-21
WP_014930914.1|1258060_1258360_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	100.0	5.3e-48
WP_025370587.1|1258343_1258709_+	hypothetical protein	NA	A0A059T6F2	Listeria_phage	99.2	2.4e-63
WP_026747164.1|1258705_1259107_+	hypothetical protein	NA	A8ATA2	Listeria_phage	97.0	5.2e-67
WP_026749924.1|1259103_1259487_+	hypothetical protein	NA	A0A059T681	Listeria_phage	96.9	2.1e-65
WP_025370590.1|1259507_1260095_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	99.0	1.3e-106
WP_025370591.1|1260165_1260498_+	hypothetical protein	NA	A0A059T7R2	Listeria_phage	97.3	8.7e-52
WP_009931626.1|1260548_1260710_+	hypothetical protein	NA	A0A059T6F4	Listeria_phage	98.0	4.3e-20
WP_026749925.1|1260713_1265624_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	96.0	0.0e+00
WP_026749926.1|1265620_1267270_+|tail	phage tail family protein	tail	A0A059T682	Listeria_phage	99.3	0.0e+00
WP_026749927.1|1267282_1269577_+|tail	phage tail protein	tail	A0A059T7Y6	Listeria_phage	99.2	0.0e+00
WP_026749928.1|1269566_1270661_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	84.9	1.9e-175
WP_003733957.1|1270711_1271017_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_014929558.1|1271016_1271298_+|holin	phage holin	holin	A8ATW3	Listeria_phage	98.9	6.7e-45
WP_045599354.1|1271297_1272149_+	N-acetylmuramoyl-L-alanine amidase	NA	P89923	Bacillus_phage	50.6	8.0e-33
WP_026749929.1|1272753_1273263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026749930.1|1273658_1273844_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	89.7	5.4e-19
WP_031664868.1|1274284_1274518_+	hypothetical protein	NA	A8ATC5	Listeria_phage	89.6	1.1e-32
WP_045599352.1|1275166_1276525_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
WP_003729706.1|1276566_1277160_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
1276655:1276672	attR	AAATAAAGCAAGTAAGCT	NA	NA	NA	NA
WP_012581425.1|1277296_1277704_-	VOC family protein	NA	NA	NA	NA	NA
WP_031664862.1|1277868_1278468_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.5	3.8e-29
WP_003723543.1|1278500_1278761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581424.1|1278884_1280297_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.1	2.2e-51
WP_003730329.1|1280321_1280585_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_031664861.1|1280750_1281227_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003730327.1|1281263_1281509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581422.1|1281505_1282711_-	MFS transporter	NA	NA	NA	NA	NA
WP_031664859.1|1282915_1283575_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003726053.1|1283614_1283809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003730323.1|1283875_1284724_-	YitT family protein	NA	NA	NA	NA	NA
WP_003723553.1|1285054_1285192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003732787.1|1285342_1286056_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_031664857.1|1286086_1287733_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_023552381.1|1287751_1289236_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_014601949.1|1289352_1289814_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003726717.1|1289852_1290317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014601950.1|1290505_1291420_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014601951.1|1291444_1292692_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	52.0	4.2e-107
WP_014601952.1|1292675_1293506_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.0	1.1e-45
WP_031664854.1|1293653_1294793_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1294873_1295269_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1295419_1295635_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1295753_1296287_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1296304_1296970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1297231_1298170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1298284_1299568_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1299752_1301012_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1301130_1301697_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723888.1|1301731_1302301_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1302402_1302945_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1302954_1303818_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_023548886.1|1303814_1304600_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1304733_1305594_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|1305864_1307943_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_031664850.1|1308005_1309310_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1309592_1310495_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1310515_1311055_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010989722.1|1311068_1312478_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
>prophage 4
NZ_CP011397	Listeria monocytogenes strain CFSAN007956 chromosome, complete genome	2918170	1844778	1853064	2918170		Synechococcus_phage(33.33%)	8	NA	NA
WP_033921148.1|1844778_1845345_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_031665593.1|1845341_1846391_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	9.2e-63
WP_003722245.1|1846409_1847837_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_039384720.1|1847821_1850041_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.1	6.5e-159
WP_003733240.1|1850033_1850717_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1850720_1850966_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_014931516.1|1850977_1851691_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	37.8	8.8e-41
WP_045598711.1|1851771_1853064_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
NZ_CP011397	Listeria monocytogenes strain CFSAN007956 chromosome, complete genome	2918170	2512368	2520212	2918170		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2512368_2513340_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2513347_2514316_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722606.1|2514317_2515193_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_031645160.1|2515300_2517031_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	3.3e-174
WP_003734087.1|2517072_2518134_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_014601137.1|2518150_2519134_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	37.2	1.6e-48
WP_003722610.1|2519252_2520212_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
