assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001008015.1_ASM100801v1	NZ_CP010999	Streptococcus thermophilus strain MN-BM-A02 chromosome, complete genome	1	633203-635349	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-A,Type II-B,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	32,32,32	32	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|189aa|up_9|NZ_CP010999.1_618348_618915_+,NA|121aa|up_5|NZ_CP010999.1_624875_625238_+,NA	NA|189aa|up_9|NZ_CP010999.1_618348_618915_+	NA	NA|76aa|up_8|NZ_CP010999.1_619758_619986_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|131aa|up_7|NZ_CP010999.1_623729_624122_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|121aa|up_6|NZ_CP010999.1_624118_624481_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|121aa|up_5|NZ_CP010999.1_624875_625238_+	NA	NA|204aa|up_4|NZ_CP010999.1_626444_627056_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NZ_CP010999.1_627311_630677_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NZ_CP010999.1_630853_631765_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NZ_CP010999.1_631766_632090_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NZ_CP010999.1_632086_633139_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NZ_CP010999.1_635390_636206_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NZ_CP010999.1_636205_637108_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NZ_CP010999.1_637471_639604_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NZ_CP010999.1_639590_640031_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NZ_CP010999.1_640096_640360_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NZ_CP010999.1_640489_641419_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NZ_CP010999.1_641418_642210_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NZ_CP010999.1_642332_642731_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NZ_CP010999.1_642743_643184_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NZ_CP010999.1_643204_643501_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_001008015.1_ASM100801v1	NZ_CP010999	Streptococcus thermophilus strain MN-BM-A02 chromosome, complete genome	2	884614-884872	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type III-A,Type III-B,Type III-D,Type III-C	GATATAAACCTAATTACCTCGAGAGGGGACGGAAACCC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC	38,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	2,3,3	3	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|85aa|up_8|NZ_CP010999.1_872453_872708_+,NA|77aa|down_9|NZ_CP010999.1_896679_896910_+	NA|150aa|up_9|NZ_CP010999.1_871793_872243_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|85aa|up_8|NZ_CP010999.1_872453_872708_+	NA	NA|255aa|up_7|NZ_CP010999.1_873503_874268_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|212aa|up_6|NZ_CP010999.1_874329_874965_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|553aa|up_5|NZ_CP010999.1_877891_879550_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|183aa|up_4|NZ_CP010999.1_880482_881031_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_3|NZ_CP010999.1_881271_882075_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_CP010999.1_882093_883041_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|NZ_CP010999.1_883179_884184_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_CP010999.1_884183_884513_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NZ_CP010999.1_885001_885733_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NZ_CP010999.1_885713_887990_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|NZ_CP010999.1_887993_888374_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NZ_CP010999.1_888373_889036_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NZ_CP010999.1_889037_889937_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NZ_CP010999.1_889939_891013_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|232aa|down_6|NZ_CP010999.1_892008_892704_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_7|NZ_CP010999.1_892793_893423_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_8|NZ_CP010999.1_894120_895572_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|77aa|down_9|NZ_CP010999.1_896679_896910_+	NA
GCF_001008015.1_ASM100801v1	NZ_CP010999	Streptococcus thermophilus strain MN-BM-A02 chromosome, complete genome	3	954527-955289	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	GGATCACCCCCGCGTGTGCGGGAAAAAC,GGATCACCCCCGCGTGTGCGGGAAAAAC,GGATCACCCCCGCGTGTGCGGGAAAAAC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	12,12,12	12	TypeI-E	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|33aa|up_9|NZ_CP010999.1_941201_941300_-,NA	NA|33aa|up_9|NZ_CP010999.1_941201_941300_-	NA	NA|90aa|up_8|NZ_CP010999.1_941336_941606_-	pfam18033, SpuA_C, SpuA C-terminal	NA|171aa|up_7|NZ_CP010999.1_941711_942224_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|122aa|up_6|NZ_CP010999.1_942287_942653_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|154aa|up_5|NZ_CP010999.1_942609_943071_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|270aa|up_4|NZ_CP010999.1_943036_943846_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|585aa|up_3|NZ_CP010999.1_946076_947831_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|463aa|up_2|NZ_CP010999.1_948001_949390_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|333aa|up_1|NZ_CP010999.1_949547_950546_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|324aa|up_0|NZ_CP010999.1_950570_951542_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	DEDDh|302aa|down_0|NZ_CP010999.1_955309_956215_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|314aa|down_1|NZ_CP010999.1_956216_957158_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|213aa|down_2|NZ_CP010999.1_957161_957800_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|NZ_CP010999.1_957804_958530_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|356aa|down_4|NZ_CP010999.1_958543_959611_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|198aa|down_5|NZ_CP010999.1_959600_960194_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|556aa|down_6|NZ_CP010999.1_960203_961871_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|927aa|down_7|NZ_CP010999.1_961857_964638_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|648aa|down_8|NZ_CP010999.1_964934_966878_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|423aa|down_9|NZ_CP010999.1_966952_968221_-	PRK09357, pyrC, dihydroorotase; Validated
GCF_001008015.1_ASM100801v1	NZ_CP010999	Streptococcus thermophilus strain MN-BM-A02 chromosome, complete genome	4	1368586-1369413	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-A,Type II-B,Type II-C	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	12,12,12	12	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|66aa|up_7|NZ_CP010999.1_1362296_1362494_-,NA|148aa|up_4|NZ_CP010999.1_1365378_1365822_-,NA|80aa|up_0|NZ_CP010999.1_1368262_1368502_-,NA	NA|737aa|up_9|NZ_CP010999.1_1359274_1361485_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|NZ_CP010999.1_1361484_1362225_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|NZ_CP010999.1_1362296_1362494_-	NA	NA|438aa|up_6|NZ_CP010999.1_1362660_1363974_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|NZ_CP010999.1_1364067_1364196_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|NZ_CP010999.1_1365378_1365822_-	NA	NA|128aa|up_3|NZ_CP010999.1_1365852_1366236_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NZ_CP010999.1_1366924_1367167_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NZ_CP010999.1_1367334_1368225_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NZ_CP010999.1_1368262_1368502_-	NA	csn2|220aa|down_0|NZ_CP010999.1_1369734_1370394_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP010999.1_1370383_1370728_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP010999.1_1370724_1371594_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NZ_CP010999.1_1371593_1375760_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NZ_CP010999.1_1376092_1376740_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NZ_CP010999.1_1376851_1378576_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NZ_CP010999.1_1378672_1380625_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|202aa|down_7|NZ_CP010999.1_1380625_1381231_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NZ_CP010999.1_1381271_1381967_-	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|125aa|down_9|NZ_CP010999.1_1381959_1382334_-	pfam03788, LrgA, LrgA family
GCF_001008015.1_ASM100801v1	NZ_CP010999	Streptococcus thermophilus strain MN-BM-A02 chromosome, complete genome	5	1584836-1584927	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|87aa|up_3|NZ_CP010999.1_1580451_1580712_-,NA|143aa|down_7|NZ_CP010999.1_1590829_1591258_-	cas3|673aa|up_9|NZ_CP010999.1_1571901_1573920_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NZ_CP010999.1_1574048_1575152_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NZ_CP010999.1_1575172_1575532_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NZ_CP010999.1_1575535_1576567_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NZ_CP010999.1_1576664_1577696_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NZ_CP010999.1_1577719_1580269_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|87aa|up_3|NZ_CP010999.1_1580451_1580712_-	NA	NA|316aa|up_2|NZ_CP010999.1_1580798_1581746_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NZ_CP010999.1_1581811_1582705_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NZ_CP010999.1_1582889_1584791_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NZ_CP010999.1_1585039_1586482_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NZ_CP010999.1_1586490_1587456_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NZ_CP010999.1_1587545_1587980_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NZ_CP010999.1_1587972_1588362_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NZ_CP010999.1_1588432_1588993_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NZ_CP010999.1_1589105_1589561_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NZ_CP010999.1_1589579_1590641_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NZ_CP010999.1_1590829_1591258_-	NA	NA|198aa|down_8|NZ_CP010999.1_1591302_1591896_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|130aa|down_9|NZ_CP010999.1_1591864_1592254_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
