assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001010285.1_ASM101028v1	NZ_CP011104	Photorhabdus thracensis strain DSM 15199 chromosome, complete genome	1	4707654-4709122	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,cas3,DEDDh,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,WYL,DinG,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	24,24,20	24	Orphan	cas14j,cas3,DEDDh,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,WYL,DinG,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|134aa|up_7|NZ_CP011104.1_4693603_4694005_-,NA|245aa|up_6|NZ_CP011104.1_4694063_4694798_-,NA|136aa|down_5|NZ_CP011104.1_4714520_4714928_-	NA|264aa|up_9|NZ_CP011104.1_4691042_4691834_-	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|584aa|up_8|NZ_CP011104.1_4691830_4693582_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|134aa|up_7|NZ_CP011104.1_4693603_4694005_-	NA	NA|245aa|up_6|NZ_CP011104.1_4694063_4694798_-	NA	NA|193aa|up_5|NZ_CP011104.1_4699610_4700189_-	PRK03757, PRK03757, YceI family protein	NA|185aa|up_4|NZ_CP011104.1_4700213_4700768_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|79aa|up_3|NZ_CP011104.1_4702488_4702725_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|577aa|up_2|NZ_CP011104.1_4702963_4704694_+	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|256aa|up_1|NZ_CP011104.1_4704772_4705540_-	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|512aa|up_0|NZ_CP011104.1_4706028_4707564_-	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]	NA|195aa|down_0|NZ_CP011104.1_4709434_4710019_-	PRK10809, PRK10809, 30S ribosomal protein S5 alanine N-acetyltransferase	NA|402aa|down_1|NZ_CP011104.1_4710208_4711414_+	PRK11646, PRK11646, multidrug efflux MFS transporter MdtH	NA|188aa|down_2|NZ_CP011104.1_4711451_4712015_+	PRK10598, PRK10598, lipoprotein; Provisional	NA|181aa|down_3|NZ_CP011104.1_4712081_4712624_-	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only]	NA|314aa|down_4|NZ_CP011104.1_4712696_4713638_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|136aa|down_5|NZ_CP011104.1_4714520_4714928_-	NA	NA|2010aa|down_6|NZ_CP011104.1_4715020_4721050_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|1169aa|down_7|NZ_CP011104.1_4725752_4729259_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|371aa|down_8|NZ_CP011104.1_4729381_4730494_-	pfam04443, LuxE, Acyl-protein synthetase, LuxE	NA|325aa|down_9|NZ_CP011104.1_4730558_4731533_-	cd01096, Alkanal_monooxygenase, Alkanal monooxygenase are flavin monoxygenases
GCF_001010285.1_ASM101028v1	NZ_CP011104	Photorhabdus thracensis strain DSM 15199 chromosome, complete genome	2	5031840-5032708	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas14j,cas3,DEDDh,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,WYL,DinG,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	14,14,13	14	TypeI-F	cas14j,cas3,DEDDh,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,WYL,DinG,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|123aa|up_9|NZ_CP011104.1_5018208_5018577_-,NA	NA|123aa|up_9|NZ_CP011104.1_5018208_5018577_-	NA	NA|278aa|up_8|NZ_CP011104.1_5018801_5019635_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|504aa|up_7|NZ_CP011104.1_5019938_5021450_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|645aa|up_6|NZ_CP011104.1_5021466_5023401_+	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|329aa|up_5|NZ_CP011104.1_5023760_5024747_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|557aa|up_4|NZ_CP011104.1_5024865_5026536_+	PRK10484, PRK10484, putative transporter; Provisional	NA|378aa|up_3|NZ_CP011104.1_5026886_5028020_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|635aa|up_2|NZ_CP011104.1_5028095_5030000_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|297aa|up_1|NZ_CP011104.1_5030039_5030930_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|276aa|up_0|NZ_CP011104.1_5030968_5031796_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	cas6f|185aa|down_0|NZ_CP011104.1_5032838_5033393_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|339aa|down_1|NZ_CP011104.1_5033402_5034419_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|321aa|down_2|NZ_CP011104.1_5034442_5035405_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|450aa|down_3|NZ_CP011104.1_5035401_5036751_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|370aa|down_4|NZ_CP011104.1_5037228_5038338_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|375aa|down_5|NZ_CP011104.1_5039227_5040352_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	cas3f|1093aa|down_6|NZ_CP011104.1_5042154_5045433_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|down_7|NZ_CP011104.1_5045429_5046410_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|110aa|down_8|NZ_CP011104.1_5047250_5047580_+	TIGR03342, dsrC_tusE_dsvC, sulfur relay protein, TusE/DsrC/DsvC family	NA|93aa|down_9|NZ_CP011104.1_5047592_5047871_-	PRK14426, PRK14426, acylphosphatase; Provisional
GCF_001010285.1_ASM101028v1	NZ_CP011104	Photorhabdus thracensis strain DSM 15199 chromosome, complete genome	3	5048451-5049978	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j	cas14j,cas3,DEDDh,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,WYL,DinG,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGCAC,TTTCTAAGCTGCCTGTACGGCAGTGCAC,TTTCTAAGCTGCCTGTACGGCAGTGCAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	25,25,12	25	TypeV,TypeI-F	cas14j,cas3,DEDDh,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,WYL,DinG,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	cas7f|339aa|up_9|NZ_CP011104.1_5033402_5034419_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|321aa|up_8|NZ_CP011104.1_5034442_5035405_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|450aa|up_7|NZ_CP011104.1_5035401_5036751_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|370aa|up_6|NZ_CP011104.1_5037228_5038338_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|375aa|up_5|NZ_CP011104.1_5039227_5040352_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	cas3f|1093aa|up_4|NZ_CP011104.1_5042154_5045433_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|up_3|NZ_CP011104.1_5045429_5046410_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|110aa|up_2|NZ_CP011104.1_5047250_5047580_+	TIGR03342, dsrC_tusE_dsvC, sulfur relay protein, TusE/DsrC/DsvC family	NA|93aa|up_1|NZ_CP011104.1_5047592_5047871_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|107aa|up_0|NZ_CP011104.1_5048095_5048416_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|685aa|down_0|NZ_CP011104.1_5052074_5054129_-	PRK11054, helD, DNA helicase IV; Provisional	NA|47aa|down_1|NZ_CP011104.1_5054248_5054389_+	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	cas14j|390aa|down_2|NZ_CP011104.1_5054412_5055582_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|692aa|down_3|NZ_CP011104.1_5055680_5057756_+	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|201aa|down_4|NZ_CP011104.1_5057816_5058419_-	pfam04993, TfoX_N, TfoX N-terminal domain	NA|175aa|down_5|NZ_CP011104.1_5058666_5059191_+	PRK10595, PRK10595, cell division inhibitor SulA	NA|368aa|down_6|NZ_CP011104.1_5059745_5060849_+	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|459aa|down_7|NZ_CP011104.1_5061009_5062386_+	pfam14706, Tnp_DNA_bind, Transposase DNA-binding	NA|152aa|down_8|NZ_CP011104.1_5062473_5062929_-	PRK05097, PRK05097, macrodomain Ter protein MatP	NA|577aa|down_9|NZ_CP011104.1_5063137_5064868_+	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
