assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001013565.1_BPD420	NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	1	585476-585560	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|137aa|up_9|NZ_LN849008.1_573001_573412_+	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase	NA|248aa|up_8|NZ_LN849008.1_574433_575177_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|348aa|up_7|NZ_LN849008.1_575220_576264_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|701aa|up_6|NZ_LN849008.1_576434_578537_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|319aa|up_5|NZ_LN849008.1_579947_580904_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|164aa|up_4|NZ_LN849008.1_580922_581414_-	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|452aa|up_3|NZ_LN849008.1_581410_582766_-	TIGR01942, pcnB, poly(A) polymerase	NA|233aa|up_2|NZ_LN849008.1_582766_583465_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|234aa|up_1|NZ_LN849008.1_583461_584163_-	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|350aa|up_0|NZ_LN849008.1_584415_585465_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|314aa|down_0|NZ_LN849008.1_585570_586512_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|630aa|down_1|NZ_LN849008.1_586508_588398_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|213aa|down_2|NZ_LN849008.1_588484_589123_+	PRK10847, PRK10847, DedA family protein	NA|462aa|down_3|NZ_LN849008.1_589265_590651_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|179aa|down_4|NZ_LN849008.1_590581_591118_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|464aa|down_5|NZ_LN849008.1_591269_592661_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|327aa|down_6|NZ_LN849008.1_592677_593658_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|328aa|down_7|NZ_LN849008.1_593793_594777_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|300aa|down_8|NZ_LN849008.1_594841_595741_-	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|585aa|down_9|NZ_LN849008.1_595847_597602_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]
GCF_001013565.1_BPD420	NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	2	958884-958993	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	GGGGACAGATACCGTCTTGGCCGTCAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|272aa|up_9|NZ_LN849008.1_945812_946628_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|293aa|up_8|NZ_LN849008.1_946740_947619_-	PRK00030, minC, septum site-determining protein MinC	NA|588aa|up_7|NZ_LN849008.1_947730_949494_-	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|447aa|up_6|NZ_LN849008.1_949609_950950_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|475aa|up_5|NZ_LN849008.1_952019_953444_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|234aa|up_4|NZ_LN849008.1_953443_954145_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|317aa|up_3|NZ_LN849008.1_955649_956600_+	pfam00665, rve, Integrase core domain	NA|324aa|up_2|NZ_LN849008.1_956695_957667_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|227aa|up_1|NZ_LN849008.1_957671_958352_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|131aa|up_0|NZ_LN849008.1_958489_958882_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_0|NZ_LN849008.1_960245_961031_-	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|470aa|down_1|NZ_LN849008.1_961125_962535_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|267aa|down_2|NZ_LN849008.1_962545_963346_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|down_3|NZ_LN849008.1_963366_964137_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|156aa|down_4|NZ_LN849008.1_964179_964647_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|317aa|down_5|NZ_LN849008.1_964643_965594_-	pfam00665, rve, Integrase core domain	NA|293aa|down_6|NZ_LN849008.1_967542_968421_-	pfam00487, FA_desaturase, Fatty acid desaturase	NA|993aa|down_7|NZ_LN849008.1_969347_972326_-	pfam17936, Big_6, Bacterial Ig domain	NA|317aa|down_8|NZ_LN849008.1_972679_973630_+	pfam00665, rve, Integrase core domain	NA|363aa|down_9|NZ_LN849008.1_973626_974715_-	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs
GCF_001013565.1_BPD420	NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	3	3241440-3241556	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA|101aa|down_9|NZ_LN849008.1_3254239_3254542_+	NA|957aa|up_9|NZ_LN849008.1_3217884_3220755_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|163aa|up_8|NZ_LN849008.1_3223165_3223654_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|899aa|up_7|NZ_LN849008.1_3223779_3226476_+	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|761aa|up_6|NZ_LN849008.1_3226630_3228913_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|208aa|up_5|NZ_LN849008.1_3229085_3229709_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|317aa|up_4|NZ_LN849008.1_3229807_3230758_+	pfam00665, rve, Integrase core domain	NA|185aa|up_3|NZ_LN849008.1_3230804_3231359_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_2|NZ_LN849008.1_3231426_3232272_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|323aa|up_1|NZ_LN849008.1_3232341_3233310_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|1309aa|up_0|NZ_LN849008.1_3237005_3240932_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|1077aa|down_0|NZ_LN849008.1_3241667_3244898_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_1|NZ_LN849008.1_3245179_3246007_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_2|NZ_LN849008.1_3246040_3246736_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_3|NZ_LN849008.1_3246728_3248009_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_4|NZ_LN849008.1_3248018_3248996_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_5|NZ_LN849008.1_3248977_3250678_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_6|NZ_LN849008.1_3250780_3251885_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_7|NZ_LN849008.1_3251914_3252670_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|507aa|down_8|NZ_LN849008.1_3252676_3254197_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|101aa|down_9|NZ_LN849008.1_3254239_3254542_+	NA
GCF_001013565.1_BPD420	NZ_LN849008	Bordetella pertussis strain D420 chromosome 1	4	3956204-3956297	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA|132aa|down_8|NZ_LN849008.1_3963872_3964268_-	NA|391aa|up_9|NZ_LN849008.1_3945010_3946183_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_8|NZ_LN849008.1_3946308_3947286_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_7|NZ_LN849008.1_3947296_3948268_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_6|NZ_LN849008.1_3948334_3949120_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_5|NZ_LN849008.1_3949112_3950345_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_4|NZ_LN849008.1_3950540_3951296_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_3|NZ_LN849008.1_3951406_3951925_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|467aa|up_2|NZ_LN849008.1_3953713_3955114_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NZ_LN849008.1_3955213_3955558_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NZ_LN849008.1_3955646_3956117_+	pfam00582, Usp, Universal stress protein family	NA|133aa|down_0|NZ_LN849008.1_3956527_3956926_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|317aa|down_1|NZ_LN849008.1_3957057_3958008_-	pfam00665, rve, Integrase core domain	NA|316aa|down_2|NZ_LN849008.1_3958106_3959054_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|297aa|down_3|NZ_LN849008.1_3959260_3960151_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|383aa|down_4|NZ_LN849008.1_3960147_3961296_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|324aa|down_5|NZ_LN849008.1_3961303_3962275_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|387aa|down_6|NZ_LN849008.1_3962312_3963473_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|131aa|down_7|NZ_LN849008.1_3963483_3963876_-	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]	NA|132aa|down_8|NZ_LN849008.1_3963872_3964268_-	NA	NA|134aa|down_9|NZ_LN849008.1_3964264_3964666_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
