The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	47172	140246	2764708	terminase,tRNA,head,capsid,protease,integrase,tail,portal,holin	Staphylococcus_phage(89.16%)	118	43609:43633	142532:142556
43609:43633	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|47172_47475_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|47841_49380_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|49468_50668_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|50680_52684_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|52687_54880_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272057.1|54876_55569_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|55740_56043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|56151_57447_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|58306_59473_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|59503_59830_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|60121_60295_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|60275_60878_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|61148_61970_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|61962_63432_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|63615_64692_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|64711_65506_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|65577_65685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|65695_67258_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|67462_68560_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|68928_69489_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|69541_70471_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|70663_70837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|70888_72268_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|72387_73416_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|73685_74087_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|74659_74833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|75283_76324_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|76380_77223_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|77219_77777_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|77836_78361_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|78481_79045_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|79110_79851_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|79850_80723_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|80719_81400_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|81400_82297_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|82293_82674_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|82931_83108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|83350_83449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|83648_84935_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|85213_85504_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|85518_86949_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|87906_88086_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|88396_88657_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|88709_89060_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|89742_90192_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_165596011.1|90286_90628_-	hypothetical protein	NA	R9QTN8	Staphylococcus_phage	97.3	6.4e-58
WP_000920041.1|91271_91763_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|91953_92709_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|92720_92975_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|93026_93134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|93186_93363_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|93512_93809_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|93866_94154_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|94200_94353_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582137.1|94342_98128_-	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	100.0	0.0e+00
WP_001154327.1|98143_99634_-|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
WP_001133528.1|99633_104286_-|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
WP_000570353.1|104341_104464_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|104523_104970_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|105034_105988_-|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|105988_106369_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|106365_106743_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|106742_107078_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177487.1|107064_107397_-|head,tail	phage head-tail adapter protein	head,tail	Q8SDK7	Staphylococcus_phage	100.0	3.7e-58
WP_001252099.1|107405_107564_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|107599_108847_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|108934_109519_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_011447040.1|109511_110702_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000644965.1|110767_111007_-	membrane protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
WP_000133304.1|110981_112676_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|112678_113146_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|113275_113620_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406194.1|113635_114088_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A1W6JQ01	Staphylococcus_phage	100.0	3.6e-80
WP_000282749.1|114202_114691_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.8e-72
WP_001794311.1|114713_114914_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|114913_115063_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195759.1|115059_115266_-	DUF1381 domain-containing protein	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
WP_001209216.1|115282_115456_-	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
WP_001066448.1|115492_116029_-	hypothetical protein	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
WP_001795925.1|116021_116216_-	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	95.1	5.9e-24
WP_001065078.1|116178_116433_-	DUF1024 family protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
WP_000219085.1|116425_116815_-	acetyltransferase	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
WP_000982695.1|116811_117159_-	hypothetical protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	5.9e-59
WP_001126839.1|117222_117471_-	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_001029545.1|117471_117843_-	hypothetical protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
WP_001187234.1|117843_118029_-	DUF3113 family protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
WP_001123674.1|118448_118670_-	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
WP_000256589.1|118682_118841_-	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_000803062.1|118834_119614_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190253.1|119623_120394_-	hypothetical protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|120459_120741_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001081076.1|120733_120883_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_001199416.1|120879_121551_-	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
WP_000704705.1|121563_122115_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_025444512.1|122145_122925_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	99.2	1.6e-141
WP_000815404.1|122917_123139_-	DUF2483 domain-containing protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
WP_000291488.1|123148_123409_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|123501_123663_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|123659_123980_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|124038_124671_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|124685_124826_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148855.1|124856_125054_-	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_001148337.1|125069_125819_-	antirepressor	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000351243.1|125875_126415_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|126438_126699_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338185.1|126716_126941_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	98.6	1.7e-35
WP_001208482.1|127099_127870_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000705243.1|128069_128252_+	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|128287_128434_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|128430_129045_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|129152_130190_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595392.1|131308_132325_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|132346_133402_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|133837_135061_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|135504_136812_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|137351_138968_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|139043_139328_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|139502_140246_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
142532:142556	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 2
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	1572186	1580008	2764708		Hokovirus(16.67%)	9	NA	NA
WP_000244415.1|1572186_1573242_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|1573241_1573928_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|1573902_1574376_-	DoxX family protein	NA	NA	NA	NA	NA
WP_000604990.1|1575439_1576024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|1576122_1576836_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|1576839_1577259_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|1577260_1577929_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|1578279_1578873_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|1578856_1580008_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	1591979	1606620	2764708		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|1591979_1593038_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|1593376_1593919_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|1594797_1595715_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|1595805_1595907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|1595984_1597490_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|1597830_1598331_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|1598350_1599217_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|1600017_1600416_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|1600378_1602484_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|1602601_1603573_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|1603753_1603909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|1603947_1604919_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|1604905_1605862_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|1605858_1606620_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	1693871	1750551	2764708	terminase,plate,head,capsid,integrase,tail,portal,holin,transposase	Staphylococcus_phage(68.66%)	80	1690129:1690145	1716609:1716625
1690129:1690145	attL	ATGCAAAAGAAAAAGCA	NA	NA	NA	NA
WP_001006450.1|1693871_1695122_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|1695111_1695576_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|1695726_1697124_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145728.1|1697191_1698241_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
WP_000826266.1|1698302_1698818_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
WP_000896616.1|1698821_1699322_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_000874711.1|1699372_1700011_-	LexA family transcriptional regulator	NA	I1W622	Staphylococcus_phage	100.0	1.5e-116
WP_001106628.1|1700201_1700456_+	helix-turn-helix transcriptional regulator	NA	A0A0E3T8G8	Staphylococcus_phage	100.0	8.2e-42
WP_001148579.1|1700471_1701260_+	phage antirepressor KilAC domain-containing protein	NA	A0A0E3XC38	Staphylococcus_phage	99.6	1.6e-144
WP_001148858.1|1701276_1701471_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	96.9	9.7e-19
WP_001796056.1|1701501_1701717_+	hypothetical protein	NA	E9LT76	Staphylococcus_phage	97.2	1.1e-31
WP_000122245.1|1701672_1701918_-	hypothetical protein	NA	E9LT77	Staphylococcus_phage	97.5	1.3e-36
WP_000594795.1|1701988_1702210_+	hypothetical protein	NA	A0A0E3T8H0	Staphylococcus_phage	100.0	6.7e-32
WP_000048126.1|1702202_1702364_+	DUF1270 family protein	NA	A0A2H4PQQ1	Staphylococcus_phage	100.0	3.3e-20
WP_000291069.1|1702455_1702716_+	DUF1108 family protein	NA	A1KX65	Staphylococcus_virus	97.7	2.2e-42
WP_001077280.1|1702725_1702947_+	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000139740.1|1702939_1703719_+	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	98.1	4.0e-140
WP_000704705.1|1703749_1704301_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001199414.1|1704313_1704985_+	hypothetical protein	NA	W5R8I8	Staphylococcus_phage	97.8	3.7e-126
WP_001037658.1|1704977_1705730_+	DnaD domain protein	NA	Q4ZCW8	Staphylococcus_virus	88.0	2.6e-120
WP_001132235.1|1705729_1706086_+	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	96.6	3.8e-61
WP_001106172.1|1706082_1707324_+	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	99.3	2.2e-228
WP_001024406.1|1707320_1707536_+	hypothetical protein	NA	A9CR72	Staphylococcus_phage	100.0	2.8e-35
WP_001123691.1|1707538_1707760_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	1.1e-34
WP_000049810.1|1707770_1708175_+	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
WP_001187238.1|1708179_1708365_+	DUF3113 family protein	NA	A0A2I6PDU9	Staphylococcus_phage	100.0	1.4e-27
WP_000029368.1|1708365_1708722_+	hypothetical protein	NA	A0A2I6PDX2	Staphylococcus_phage	99.2	7.2e-60
WP_000131388.1|1708725_1708968_+	hypothetical protein	NA	A0A2I6PDU1	Staphylococcus_phage	100.0	3.9e-41
WP_001065093.1|1708982_1709231_+	DUF1024 family protein	NA	Q4ZDW9	Staphylococcus_virus	96.3	3.5e-37
WP_000185698.1|1709223_1709763_+	hypothetical protein	NA	B2ZYX2	Staphylococcus_phage	70.6	3.7e-60
WP_000195800.1|1709799_1710006_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	95.6	1.6e-16
WP_000592226.1|1710002_1710389_+	hypothetical protein	NA	Q4ZDW6	Staphylococcus_virus	100.0	4.0e-64
WP_000595276.1|1710385_1710559_+	transcriptional activator RinB	NA	Q4ZAX6	Staphylococcus_virus	96.5	4.1e-21
WP_000455357.1|1710559_1710925_+	hypothetical protein	NA	I1W652	Staphylococcus_phage	100.0	1.3e-59
WP_000989998.1|1710925_1711072_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000162699.1|1711095_1711518_+	RinA family phage transcriptional activator	NA	Q8SDV1	Staphylococcus_phage	100.0	1.6e-74
WP_001819177.1|1711705_1712200_+|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	97.0	1.2e-86
WP_000273014.1|1712202_1713498_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	97.7	1.7e-252
WP_000921892.1|1713508_1715044_+|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	99.4	9.3e-290
WP_001668926.1|1715050_1716046_+|capsid	minor capsid protein	capsid	B2ZYY2	Staphylococcus_phage	100.0	3.4e-184
WP_000072208.1|1716118_1716289_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392143.1|1716397_1717018_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	99.0	8.6e-77
1716609:1716625	attR	ATGCAAAAGAAAAAGCA	NA	NA	NA	NA
WP_000438509.1|1717031_1718006_+|capsid	phage major capsid protein	capsid	Q4ZDM8	Staphylococcus_virus	99.7	6.3e-183
WP_001114086.1|1718027_1718315_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000208955.1|1718323_1718656_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	98.2	4.6e-53
WP_001268302.1|1718652_1718955_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	95.0	1.3e-49
WP_001017815.1|1718954_1719302_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188639.1|1719313_1719697_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	98.4	5.9e-68
WP_000002579.1|1719715_1720297_+|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	99.5	5.4e-105
WP_001100161.1|1720359_1720725_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|1720754_1721099_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141468.1|1721115_1724583_+	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	97.1	4.1e-269
WP_000350680.1|1724595_1725543_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000156406.1|1725551_1727453_+	peptidase	NA	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
WP_000369018.1|1727467_1729378_+	hypothetical protein	NA	I1W633	Staphylococcus_phage	99.8	0.0e+00
WP_000259614.1|1729377_1731201_+|plate	BppU family phage baseplate upper protein	plate	A1KX42	Staphylococcus_virus	99.0	4.6e-296
WP_000705896.1|1731200_1731578_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782197.1|1731581_1731755_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	96.5	1.5e-26
WP_000466778.1|1731794_1732094_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000524025.1|1732230_1734129_+	CHAP domain-containing protein	NA	A0EX80	Staphylococcus_virus	99.5	0.0e+00
WP_000276664.1|1734141_1735314_+|plate	BppU family phage baseplate upper protein	plate	I1W629	Staphylococcus_phage	98.7	3.5e-196
WP_000398861.1|1735319_1735715_+	hypothetical protein	NA	A0EWU9	Staphylococcus_virus	99.2	2.7e-68
WP_000611516.1|1735771_1736026_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	1.2e-40
WP_000861038.1|1736037_1736793_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920041.1|1736983_1737475_+	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_001788502.1|1737863_1738016_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|1738086_1738197_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|1738183_1738384_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000990948.1|1739877_1740060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000180531.1|1740056_1740740_+	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	28.3	1.1e-13
WP_000274029.1|1741292_1741607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000582326.1|1741971_1743012_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000267236.1|1743025_1744093_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_016170465.1|1744346_1744430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608129.1|1744477_1745326_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927632.1|1745338_1746166_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001241246.1|1746192_1747512_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000201875.1|1747595_1748513_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|1748642_1749026_+	YutD family protein	NA	NA	NA	NA	NA
WP_001557163.1|1749231_1750551_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	1897119	1905592	2764708		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1897119_1897602_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1897588_1898713_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1898716_1899421_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1899420_1899684_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1899685_1900357_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1900349_1902539_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1902517_1904002_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1903994_1905023_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1905025_1905592_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	2523383	2532426	2764708	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|2523383_2523902_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|2523923_2526197_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|2526399_2528679_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|2528953_2529214_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|2529232_2530372_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|2530394_2531420_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|2531421_2532426_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP026063	Staphylococcus aureus strain FDAARGOS_14 chromosome, complete genome	2764708	2655857	2718067	2764708	protease,tRNA	Staphylococcus_phage(95.65%)	59	NA	NA
WP_001050566.1|2655857_2662418_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|2662743_2663055_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001108730.1|2663076_2665491_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|2665781_2666963_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|2667072_2668026_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|2668022_2668586_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|2668708_2669110_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|2669681_2670509_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|2670511_2670631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|2670742_2671744_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|2671865_2672330_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|2672342_2673524_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|2673534_2674167_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|2674173_2675205_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|2675697_2677200_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|2677722_2678037_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|2678036_2679329_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|2679415_2680270_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|2680545_2680770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|2680968_2681439_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|2681551_2681995_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|2681981_2682425_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|2682720_2683356_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|2683795_2684509_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|2684768_2685071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|2685326_2685692_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|2685688_2686042_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|2688038_2688872_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|2689083_2689992_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|2690113_2691310_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|2691681_2693274_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|2693651_2694398_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|2694402_2694876_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|2694941_2695199_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|2695195_2696197_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|2696201_2697680_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|2697838_2698294_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|2698596_2699247_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|2699327_2700323_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|2700397_2701024_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|2701064_2701406_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|2701506_2702079_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|2703433_2703529_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|2703651_2703753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|2704828_2706058_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|2706050_2707790_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|2707770_2707905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|2707967_2708687_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|2708788_2708896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|2708844_2709564_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|2709684_2710404_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|2710461_2711184_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|2711308_2712016_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|2712979_2713561_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|2714033_2714252_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_000550252.1|2714507_2714981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|2714985_2715777_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|2716146_2717130_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|2717131_2718067_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
