The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	1196907	1204727	2881244		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|1196907_1197963_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|1197962_1198649_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037811.1|1198623_1199097_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|1199438_1199879_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|1200158_1200743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|1200841_1201555_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941334.1|1201558_1201978_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446721.1|1201979_1202648_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	9.6e-66
WP_000604509.1|1202998_1203592_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	1.5e-38
WP_001217797.1|1203575_1204727_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	1216699	1230892	2881244		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663031.1|1216699_1217758_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197262.1|1217915_1218458_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|1219063_1219981_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000193751.1|1220262_1221768_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930020.1|1222107_1222608_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	2.2e-51
WP_001068497.1|1222627_1223494_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692523.1|1224294_1224693_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	4.3e-53
WP_000855505.1|1224655_1226761_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|1226878_1227850_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499194.1|1228025_1228181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047213721.1|1228219_1229188_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.1	8.0e-138
WP_001245577.1|1229177_1230134_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616870.1|1230130_1230892_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 3
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	1317450	1366157	2881244	holin,portal,head,capsid,transposase,terminase,plate,integrase	Staphylococcus_virus(48.53%)	70	1309090:1309105	1322575:1322590
1309090:1309105	attL	AAATGCTTGTTATAGG	NA	NA	NA	NA
WP_001006454.1|1317450_1318701_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_001010508.1|1318690_1319155_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|1319306_1320704_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_015967223.1|1320771_1321821_-|integrase	site-specific integrase	integrase	Q9G044	Staphylococcus_virus	100.0	2.0e-203
WP_015967224.1|1321878_1322250_-	hypothetical protein	NA	Q9G043	Staphylococcus_virus	100.0	4.1e-34
WP_015967225.1|1322239_1322665_-	hypothetical protein	NA	Q9G042	Staphylococcus_virus	100.0	6.1e-74
1322575:1322590	attR	AAATGCTTGTTATAGG	NA	NA	NA	NA
WP_015967226.1|1322720_1322906_-	hypothetical protein	NA	Q9G041	Staphylococcus_virus	100.0	3.0e-25
WP_001049401.1|1322902_1323049_-	hypothetical protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
WP_015967227.1|1323060_1323777_-	helix-turn-helix domain-containing protein	NA	Q9G039	Staphylococcus_virus	100.0	9.2e-131
WP_000639927.1|1323940_1324183_+	DUF739 family protein	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
WP_000393082.1|1324198_1324378_+	hypothetical protein	NA	A0A0H3U490	Staphylococcus_phage	100.0	4.4e-26
WP_000394410.1|1324478_1324961_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000933365.1|1325405_1325591_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_015967228.1|1325592_1326345_+	hypothetical protein	NA	Q9G034	Staphylococcus_virus	100.0	9.6e-139
WP_047213263.1|1326452_1326665_-	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	55.1	1.6e-14
WP_047213265.1|1326721_1327471_+	oxidoreductase	NA	B7T097	Staphylococcus_virus	98.8	4.9e-135
WP_015967229.1|1327575_1328241_-	hypothetical protein	NA	Q9G033	Staphylococcus_virus	100.0	1.3e-118
WP_000594792.1|1328311_1328533_+	hypothetical protein	NA	A0A0H4ISQ0	Staphylococcus_phage	100.0	1.5e-31
WP_000048124.1|1328525_1328687_+	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_015967230.1|1328780_1329041_+	DUF1108 family protein	NA	C7F7L4	Staphylococcus_phage	100.0	1.5e-43
WP_001077280.1|1329050_1329272_+	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_047213269.1|1329264_1330044_+	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	99.6	1.3e-141
WP_015978330.1|1330072_1330624_+	hypothetical protein	NA	A0A0H4IPV5	Staphylococcus_phage	100.0	3.4e-101
WP_047213271.1|1330636_1331302_+	hypothetical protein	NA	Q4ZDQ9	Staphylococcus_virus	99.5	1.7e-126
WP_047213273.1|1331487_1331898_-	hypothetical protein	NA	Q4ZDQ7	Staphylococcus_virus	98.5	9.4e-72
WP_001566734.1|1331960_1332731_+	hypothetical protein	NA	A0A0H4IPD8	Staphylococcus_phage	100.0	8.4e-122
WP_000803063.1|1332740_1333520_+	ATP-binding protein	NA	A0A068A1Z4	Staphylococcus_phage	100.0	2.9e-146
WP_000256594.1|1333513_1333672_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_001123681.1|1333685_1333907_+	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_029549553.1|1333916_1334324_+	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	98.5	8.4e-73
WP_029549552.1|1334323_1334509_+	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	98.4	7.0e-27
WP_015967239.1|1334772_1334943_+	hypothetical protein	NA	Q9G017	Staphylococcus_virus	100.0	1.0e-24
WP_001566727.1|1335369_1335522_+	DUF1024 family protein	NA	Q9G015	Staphylococcus_virus	100.0	3.3e-22
WP_015967241.1|1335518_1335803_+	hypothetical protein	NA	Q9G014	Staphylococcus_virus	100.0	3.6e-46
WP_015967242.1|1335795_1336038_+	DUF1024 family protein	NA	Q9G013	Staphylococcus_virus	100.0	1.3e-36
WP_015967243.1|1336037_1336280_+	hypothetical protein	NA	Q9G012	Staphylococcus_virus	100.0	1.4e-35
WP_015967244.1|1336272_1336809_+	hypothetical protein	NA	Q9G011	Staphylococcus_virus	100.0	4.2e-96
WP_000195803.1|1336845_1337052_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|1337048_1337435_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595257.1|1337431_1337605_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000286968.1|1337605_1338007_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594085.1|1338358_1338853_+	hypothetical protein	NA	A0A0H4J343	Staphylococcus_phage	100.0	8.4e-83
WP_001807202.1|1338845_1340054_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0H4ITX6	Staphylococcus_phage	100.0	1.0e-235
WP_001159669.1|1340007_1341486_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	4.3e-284
WP_047213283.1|1341424_1342405_+|capsid	minor capsid protein	capsid	A0A0E3XC69	Staphylococcus_phage	99.1	5.9e-181
WP_015967248.1|1342502_1343099_+	hypothetical protein	NA	C7F7L8	Staphylococcus_phage	100.0	3.4e-78
WP_015967249.1|1343119_1343944_+|capsid	N4-gp56 family major capsid protein	capsid	Q9G001	Staphylococcus_virus	100.0	1.2e-147
WP_015967250.1|1343960_1344287_+	hypothetical protein	NA	Q9G000	Staphylococcus_virus	100.0	3.3e-51
WP_015967251.1|1344286_1344601_+	hypothetical protein	NA	Q9FZZ9	Staphylococcus_virus	100.0	3.4e-53
WP_015967252.1|1344593_1344929_+|head	phage head closure protein	head	Q9FZZ8	Staphylococcus_virus	100.0	2.3e-60
WP_001151332.1|1344915_1345329_+	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	100.0	1.5e-77
WP_015967254.1|1345341_1345779_+	DUF3168 domain-containing protein	NA	A0A2H4PQL6	Staphylococcus_phage	100.0	1.6e-77
WP_000046067.1|1345765_1346326_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000141084.1|1346387_1346882_+	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
WP_000204079.1|1346902_1347244_+	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	100.0	3.5e-56
WP_047213286.1|1347246_1350216_+|terminase	terminase	terminase	Q9FZZ2	Staphylococcus_virus	100.0	6.5e-263
WP_015967256.1|1350230_1351166_+	hypothetical protein	NA	Q9FZZ1	Staphylococcus_virus	100.0	4.8e-180
WP_015967257.1|1351176_1353063_+	hypothetical protein	NA	Q9FZZ0	Staphylococcus_virus	100.0	0.0e+00
WP_015967258.1|1353075_1354974_+	hypothetical protein	NA	Q9FZY9	Staphylococcus_virus	100.0	0.0e+00
WP_015967259.1|1354973_1356797_+|plate	BppU family phage baseplate upper protein	plate	Q9FZY8	Staphylococcus_virus	100.0	4.6e-296
WP_000705910.1|1356796_1357174_+	DUF2977 domain-containing protein	NA	Q9FZY7	Staphylococcus_virus	100.0	1.2e-60
WP_000782200.1|1357177_1357351_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466784.1|1357391_1357691_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_015967260.1|1357827_1359702_+	CHAP domain-containing protein	NA	Q9FZY4	Staphylococcus_virus	100.0	0.0e+00
WP_047213289.1|1359714_1360953_+|plate	BppU family phage baseplate upper protein	plate	Q9FZY3	Staphylococcus_virus	99.8	7.7e-210
WP_001576757.1|1360958_1361354_+	hypothetical protein	NA	Q9FZY2	Staphylococcus_virus	100.0	1.6e-68
WP_000351119.1|1361410_1361686_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_015967262.1|1361672_1363085_+	CHAP domain-containing protein	NA	Q9FZY0	Staphylococcus_virus	100.0	2.0e-286
WP_001065781.1|1363210_1364053_+	exfoliative toxin A	NA	A0A0E3T8P7	Staphylococcus_phage	100.0	2.3e-157
WP_103225777.1|1364589_1366157_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.4	1.7e-49
>prophage 4
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	1772050	1825362	2881244	portal,protease,tail,head,transposase,terminase,integrase,tRNA	Bacillus_phage(26.67%)	57	1793727:1793764	1834590:1834627
WP_001001521.1|1772050_1773595_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|1773595_1773961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000842277.1|1773987_1774479_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073332.1|1774781_1777400_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	5.0e-41
WP_000516257.1|1777412_1779422_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	5.3e-59
WP_047213403.1|1779427_1779970_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103747.1|1780444_1781263_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_000417379.1|1781391_1782888_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218598.1|1783045_1784719_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_000136955.1|1784868_1785783_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001798536.1|1785800_1786736_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561359.1|1786750_1786984_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_047213134.1|1787245_1788565_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000448078.1|1788725_1789202_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_047213405.1|1789313_1790552_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652044.1|1790570_1791809_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1792051_1792420_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|1792438_1793779_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
1793727:1793764	attL	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
WP_000135759.1|1793918_1795046_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	3.7e-33
WP_047213408.1|1795098_1795794_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	40.9	1.8e-06
WP_000554410.1|1795805_1796189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047212960.1|1796384_1797704_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000664916.1|1797860_1798253_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	2.7e-28
WP_001209962.1|1798420_1798639_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932237.1|1798665_1798941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000662665.1|1799205_1799376_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	1.8e-21
WP_000800340.1|1799364_1799571_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	4.3e-25
WP_001157026.1|1799630_1800314_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	86.0	8.0e-108
WP_000072840.1|1800412_1800574_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786635.1|1800967_1801234_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001002734.1|1801238_1802489_+	helicase SNF2	NA	A0A1B1P7L4	Bacillus_phage	57.8	1.8e-134
WP_025174483.1|1802479_1802797_+	hypothetical protein	NA	A0A2P0ZLA7	Lactobacillus_phage	43.2	7.1e-19
WP_000160835.1|1802789_1803095_+	hypothetical protein	NA	A0A1B1P7M6	Bacillus_phage	59.3	5.8e-26
WP_031927619.1|1803084_1804911_+	AAA family ATPase	NA	A0A1B1P7N0	Bacillus_phage	56.3	2.6e-166
WP_001250666.1|1804928_1805135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000140895.1|1805180_1805663_+	DUF669 domain-containing protein	NA	A0A2H4J1S8	uncultured_Caudovirales_phage	37.3	2.9e-19
WP_000560476.1|1805944_1807663_+	hypothetical protein	NA	A0A1B1P7M5	Bacillus_phage	63.6	1.9e-211
WP_000394569.1|1807766_1808156_+	hypothetical protein	NA	U3PG42	Staphylococcus_phage	51.9	4.5e-07
WP_000792984.1|1808231_1808537_+	hypothetical protein	NA	A0A2H4JF73	uncultured_Caudovirales_phage	73.7	6.2e-36
WP_000231299.1|1808559_1809030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000584491.1|1809450_1809642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000276481.1|1809673_1811548_+	DNA primase	NA	A0A1B1P7L5	Bacillus_phage	57.6	1.1e-210
WP_000933402.1|1811852_1812344_+	hypothetical protein	NA	S5MAA9	Brevibacillus_phage	30.0	7.4e-07
WP_000870118.1|1812776_1813067_+	HNH endonuclease	NA	D2XR61	Bacillus_phage	43.2	1.3e-19
WP_000868798.1|1813385_1813718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046463075.1|1813701_1815345_+|terminase	terminase large subunit	terminase	A0A0U4B089	Bacillus_phage	57.3	8.4e-180
WP_000523761.1|1815360_1816497_+|portal	phage portal protein	portal	A0A2H4JBZ5	uncultured_Caudovirales_phage	41.4	7.8e-84
WP_047213417.1|1816496_1817183_+|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	49.5	1.4e-43
WP_000152780.1|1817209_1818379_+	hypothetical protein	NA	A0A0U4JIF4	Bacillus_phage	50.5	1.2e-98
WP_000406284.1|1818400_1818706_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	44.8	6.0e-15
WP_000744618.1|1818680_1819025_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_000114215.1|1819008_1819347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072314.1|1819346_1819784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000213868.1|1819789_1820473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000021684.1|1820500_1820851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000159313.1|1820898_1821123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031927625.1|1821180_1825362_+|tail	phage tail tape measure protein	tail	Q9T0X1	Lactobacillus_phage	42.6	3.2e-58
1834590:1834627	attR	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
>prophage 5
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	1829550	1835996	2881244	capsid,holin	Staphylococcus_phage(83.33%)	10	NA	NA
WP_000569801.1|1829550_1829961_+	hypothetical protein	NA	A0A1I9KKA6	Lactobacillus_phage	32.8	3.9e-09
WP_000665466.1|1829995_1830310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047213423.1|1830293_1830677_+|holin	phage holin family protein	holin	H9A0W5	Staphylococcus_phage	39.2	4.3e-18
WP_031927627.1|1830741_1831662_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.2	1.2e-66
WP_001793526.1|1832138_1832336_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_001019311.1|1832529_1833033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000459699.1|1833045_1833360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000907423.1|1833359_1833788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997672.1|1834191_1834401_+	helix-turn-helix domain-containing protein	NA	A0A1W6JNK0	Staphylococcus_phage	59.4	1.9e-12
WP_052724874.1|1834655_1835996_+|capsid	minor capsid protein	capsid	A0A1J0MFV1	Staphylococcus_phage	58.7	7.0e-140
>prophage 6
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	2012461	2098864	2881244	holin,protease,tail,portal,capsid,transposase,terminase,plate,integrase,head,tRNA	Staphylococcus_phage(77.78%)	100	2049690:2049718	2093949:2093977
WP_000858797.1|2012461_2013754_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525073.1|2014075_2016769_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049912.1|2016792_2017764_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_001043250.1|2017750_2018953_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	27.9	2.0e-29
WP_000690018.1|2018957_2020100_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|2020343_2020661_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|2020996_2021677_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154688.1|2021748_2022336_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_047213454.1|2022325_2022901_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	26.7	1.0e-07
WP_000389525.1|2022914_2024159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245910.1|2024165_2025464_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776332.1|2025473_2026538_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269935.1|2026563_2027730_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.0e-34
WP_047213134.1|2028155_2029475_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000442480.1|2029718_2030168_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_016169114.1|2030259_2031204_-	heptaprenyl diphosphate synthase component II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|2031220_2031946_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|2031948_2032521_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|2032951_2033224_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161743.1|2033394_2034393_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|2034409_2035720_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133955.1|2035941_2037117_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031927466.1|2037373_2037565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031844926.1|2037681_2037786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644392.1|2037828_2038488_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_029549671.1|2038564_2039533_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|2039647_2040634_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_031927468.1|2040827_2040911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069302.1|2041035_2042319_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902112.1|2042471_2043851_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	3.8e-56
WP_001163818.1|2043840_2044794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151998.1|2044901_2045150_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	46.7	1.9e-14
WP_001186910.1|2045255_2045801_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_047213459.1|2047395_2047542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047213461.1|2047534_2048461_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000913240.1|2048518_2049424_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_047213463.1|2049513_2049729_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	98.4	5.9e-25
2049690:2049718	attL	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
WP_000909205.1|2050450_2051905_-	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	99.6	2.8e-288
WP_000339144.1|2051915_2052218_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|2052353_2052653_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|2052698_2052863_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|2052855_2053245_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|2053244_2054711_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|2054710_2056621_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|2056636_2056927_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|2056926_2058510_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|2058518_2059343_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_047213465.1|2059342_2065543_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.5	0.0e+00
WP_000438833.1|2065556_2065715_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|2065756_2066107_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_047213467.1|2066164_2066620_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	99.3	2.2e-77
WP_000807536.1|2066711_2067353_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|2067387_2067783_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|2067783_2068185_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|2068181_2068514_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|2068525_2068804_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|2068872_2070036_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|2070047_2070821_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100669.1|2070804_2072043_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000153541.1|2072047_2073739_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	99.8	0.0e+00
WP_000778933.1|2073728_2074034_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|2074162_2074477_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000528514.1|2074633_2075071_-	transcriptional regulator	NA	B5WZN8	Staphylococcus_phage	100.0	2.7e-77
WP_001793488.1|2075083_2076451_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|2076431_2076722_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|2076855_2076960_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_015994231.1|2077062_2079510_-	virulence-associated protein E	NA	B5WZN5	Staphylococcus_phage	100.0	0.0e+00
WP_000265258.1|2079562_2079763_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595237.1|2079830_2079983_-	transcriptional activator RinB	NA	B5WZN3	Staphylococcus_phage	100.0	2.6e-19
WP_000483477.1|2079975_2080212_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195806.1|2080236_2080473_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
WP_000185703.1|2080509_2081046_-	hypothetical protein	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
WP_000028425.1|2081038_2081221_-	hypothetical protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
WP_047213471.1|2081210_2081462_-	DUF1024 family protein	NA	W5R8J0	Staphylococcus_phage	98.8	6.4e-39
WP_000132194.1|2081476_2081719_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|2081733_2081934_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_047213473.1|2081936_2082194_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	1.7e-42
WP_000113974.1|2082193_2082595_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001802096.1|2082791_2084744_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_047213475.1|2084811_2085369_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	99.5	2.0e-96
WP_000762530.1|2085394_2086561_-	DUF2800 domain-containing protein	NA	B5WZM3	Staphylococcus_phage	100.0	8.3e-222
WP_000279452.1|2086557_2086920_-	hypothetical protein	NA	Q4ZCH9	Staphylococcus_virus	100.0	2.9e-56
WP_000174996.1|2086934_2087258_-	hypothetical protein	NA	B7T0G4	Staphylococcus_virus	100.0	8.5e-52
WP_001285961.1|2087337_2087499_-	DUF1270 domain-containing protein	NA	Q4ZCI2	Staphylococcus_virus	100.0	1.9e-20
WP_001124160.1|2087511_2087775_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|2087799_2088015_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_047213477.1|2088069_2088435_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	99.2	9.3e-63
WP_001025401.1|2088403_2088649_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001001383.1|2088698_2088917_-	hypothetical protein	NA	B5WZL5	Staphylococcus_phage	100.0	7.8e-33
WP_001030311.1|2089513_2089741_-	hypothetical protein	NA	B5WZL3	Staphylococcus_phage	100.0	3.3e-34
WP_000801423.1|2089912_2090527_+	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	100.0	9.0e-111
WP_000348133.1|2090542_2091463_+	exonuclease	NA	B5WZL1	Staphylococcus_phage	100.0	2.5e-173
WP_000705240.1|2091558_2091741_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001794606.1|2091776_2091923_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	97.9	2.6e-16
WP_000191466.1|2091919_2092534_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|2092659_2093865_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_072472527.1|2093907_2094675_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	46.5	4.5e-43
2093949:2093977	attR	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
WP_072403849.1|2094689_2095949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031927558.1|2095935_2096868_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|2097112_2098864_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 7
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	2156211	2164523	2881244	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|2156211_2156997_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924216.1|2157122_2158013_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_047213497.1|2158022_2159369_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683926.1|2159482_2160583_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	2.3e-08
WP_000624574.1|2160585_2161263_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|2161393_2162500_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217266.1|2162723_2164523_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.3e-53
>prophage 8
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	2234060	2243103	2881244	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|2234060_2234579_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_042908036.1|2234600_2236874_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749803.1|2237076_2239356_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|2239630_2239891_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|2239909_2241049_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019170.1|2241071_2242097_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|2242098_2243103_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	2371886	2428661	2881244	protease,tRNA	Staphylococcus_phage(95.45%)	53	NA	NA
WP_047213547.1|2371886_2378426_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	92.5	9.5e-291
WP_000836469.1|2378751_2379063_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001108719.1|2379084_2381499_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|2381789_2382971_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|2383080_2384034_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|2384030_2384594_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|2384713_2385115_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266089.1|2385686_2386514_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_072357767.1|2386516_2386636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|2386747_2387749_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|2387870_2388335_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_047213550.1|2388347_2389529_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	5.1e-227
WP_000493884.1|2389539_2390172_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	1.4e-111
WP_078103423.1|2390178_2391210_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	2.0e-195
WP_047213554.1|2391702_2393205_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	8.6e-30
WP_000221188.1|2393725_2394040_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	2.8e-52
WP_000989112.1|2394039_2395332_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.7	8.8e-225
WP_000163240.1|2395349_2395745_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
WP_001032833.1|2396094_2396949_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|2397224_2397449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671048.1|2397647_2398118_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
WP_001153740.1|2398230_2398674_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|2398660_2399104_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168909.1|2399401_2400037_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|2400473_2401187_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|2401444_2401747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|2402002_2402368_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623473.1|2402364_2402718_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	77.8	4.2e-20
WP_047213557.1|2402967_2403801_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366163.1|2404012_2404921_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|2405045_2406239_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109907.1|2406610_2408203_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_072357842.1|2408497_2409244_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	1.3e-140
WP_000672018.1|2409248_2409722_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.0e-82
WP_000718107.1|2409787_2410045_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778513.1|2410041_2411043_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	8.2e-186
WP_000348367.1|2411047_2412526_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	6.9e-282
WP_072357839.1|2412684_2413140_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.4e-79
WP_072357764.1|2413442_2414093_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	67.6	9.5e-34
WP_000070657.1|2414174_2415170_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.8	2.9e-74
WP_047213559.1|2415244_2415871_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	92.4	2.8e-75
WP_000627546.1|2415911_2416253_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	3.0e-55
WP_047213562.1|2416353_2416926_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	7.1e-25
WP_000864137.1|2417123_2417681_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.0e-77
WP_000747794.1|2418308_2418752_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000742593.1|2419071_2419521_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_047213567.1|2420156_2421347_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	34.7	1.5e-45
WP_000028660.1|2421339_2422896_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	1.2e-287
WP_001038741.1|2423259_2423979_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	95.8	4.0e-126
WP_001038864.1|2424104_2424824_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	92.9	2.4e-123
WP_001039451.1|2424881_2425604_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	95.8	8.1e-127
WP_001092761.1|2427390_2427969_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	74.0	1.5e-67
WP_025174462.1|2428442_2428661_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	83.3	4.1e-26
>prophage 10
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	2542653	2616542	2881244	holin,portal,tail,head,capsid,transposase,terminase,protease	Staphylococcus_phage(89.19%)	102	NA	NA
WP_000827765.1|2542653_2543820_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434533.1|2543850_2544177_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|2544467_2544641_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011539.1|2544621_2545224_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040872.1|2545492_2546314_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	7.9e-70
WP_000284433.1|2546306_2547776_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|2547959_2549036_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2549055_2549850_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2549921_2550029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|2550039_2551602_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275712.1|2551806_2552904_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.5e-47
WP_000149686.1|2553275_2553836_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2553888_2554818_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2555010_2555184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042908133.1|2555235_2556615_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181312.1|2556734_2557763_-	lactonase family protein	NA	NA	NA	NA	NA
WP_047213605.1|2558033_2558426_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	45.4	2.9e-22
WP_000267034.1|2558482_2558656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188066.1|2559106_2560147_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713075.1|2560203_2561046_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|2561042_2561600_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2561659_2562184_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2562304_2562868_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221656.1|2562933_2563674_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_047213607.1|2563673_2564546_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2564542_2565223_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991298.1|2565223_2566120_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2566116_2566497_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681972.1|2566754_2566931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2567173_2567272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068524.1|2567471_2568758_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671713.1|2569028_2569319_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_046463167.1|2569333_2570770_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|2571727_2571907_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2572217_2572478_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2572529_2572880_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_165624923.1|2573390_2573732_-	hypothetical protein	NA	R9QTN8	Staphylococcus_phage	94.7	2.7e-56
WP_000920038.1|2574376_2574868_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|2575058_2575814_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2575825_2576080_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2576131_2576239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072357969.1|2576291_2576468_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_000340977.1|2576610_2576985_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040255.1|2577040_2577328_-	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000654329.1|2577374_2577527_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_047213611.1|2577516_2581302_-	phage minor structural protein	NA	D2JLF9	Staphylococcus_phage	98.7	0.0e+00
WP_001154327.1|2581317_2582808_-|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
WP_047213612.1|2582807_2587292_-|tail	phage tail tape measure protein	tail	D2JLF7	Staphylococcus_phage	95.7	0.0e+00
WP_000570353.1|2587347_2587470_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442602.1|2587529_2587976_-	hypothetical protein	NA	O80053	Staphylococcus_phage	96.6	1.9e-73
WP_000570652.1|2588040_2588994_-|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|2588994_2589375_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|2589371_2589749_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2589748_2590084_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2590070_2590403_-|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2590411_2590570_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2590605_2591853_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2591940_2592525_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_011447040.1|2592517_2593708_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000644965.1|2593773_2594013_-	membrane protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
WP_000133304.1|2593987_2595682_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2595684_2596152_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2596281_2596626_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|2596641_2597094_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282747.1|2597208_2597688_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.8e-72
WP_047213617.1|2597710_2597911_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	3.1e-28
WP_000595240.1|2597910_2598060_-	hypothetical protein	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	4.1e-17
WP_000573772.1|2598052_2598253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195827.1|2598249_2598456_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	76.5	1.4e-20
WP_000185669.1|2598492_2599029_-	hypothetical protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_047213620.1|2599021_2599270_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	98.8	2.0e-37
WP_047213622.1|2599262_2599538_-	hypothetical protein	NA	A0A0H4ISQ8	Staphylococcus_phage	94.4	1.2e-41
WP_047213624.1|2599537_2599939_-	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	81.3	5.4e-56
WP_000131379.1|2599953_2600196_-	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_047213626.1|2600199_2600568_-	phage protein	NA	I1W656	Staphylococcus_phage	99.2	3.1e-50
WP_001662398.1|2600580_2600985_-	RusA family crossover junction endodeoxyribonuclease	NA	O80087	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2600993_2601212_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_047213628.1|2601218_2602103_-	DnaD domain protein	NA	I1W658	Staphylococcus_phage	99.3	1.9e-138
WP_000934769.1|2602132_2602603_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_076692545.1|2602603_2603206_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	8.9e-87
WP_000138475.1|2603301_2604222_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_031763790.1|2604223_2606167_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.7	0.0e+00
WP_001205732.1|2606175_2606439_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|2606447_2606708_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|2606800_2606962_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120935.1|2606958_2607279_-	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_047213632.1|2607337_2607565_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	98.7	1.1e-37
WP_000389906.1|2607566_2607758_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2607807_2608164_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148853.1|2608158_2608353_-	hypothetical protein	NA	Q4ZDS1	Staphylococcus_virus	98.4	2.9e-23
WP_047213634.1|2608368_2609118_-	oxidoreductase	NA	Q8SDM9	Staphylococcus_phage	99.2	1.7e-135
WP_047213263.1|2609174_2609387_+	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	55.1	1.6e-14
WP_000435357.1|2609493_2609937_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
WP_000213811.1|2609984_2610197_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_001566740.1|2610348_2611080_+	helix-turn-helix transcriptional regulator	NA	A0A075LYE4	Staphylococcus_phage	75.8	9.8e-88
WP_001049399.1|2611091_2611247_+	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	6.3e-21
WP_001089804.1|2611233_2611419_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|2611618_2611801_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2611836_2611983_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_103225775.1|2612394_2613961_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.7e-49
WP_047213639.1|2614448_2615465_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	1.1e-25
WP_000791409.1|2615486_2616542_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	1.9e-36
>prophage 11
NZ_CP026067	Staphylococcus aureus strain FDAARGOS_21 chromosome, complete genome	2881244	2640242	2677341	2881244	capsid,transposase,terminase,integrase,protease,tRNA	Staphylococcus_phage(30.0%)	44	2636813:2636830	2660538:2660555
2636813:2636830	attL	ATAATATAATTATGAATA	NA	NA	NA	NA
WP_000746372.1|2640242_2640746_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_107399907.1|2640726_2641263_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	9.9e-29
WP_168173448.1|2641425_2642001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000770704.1|2641972_2642464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103225780.1|2642920_2643076_-|terminase	terminase	terminase	Q4ZE85	Staphylococcus_phage	94.0	6.3e-21
WP_000253083.1|2643072_2643564_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
WP_000657538.1|2643746_2644805_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_047213648.1|2644791_2644998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081426.1|2645222_2645567_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	5.5e-41
WP_047213650.1|2646239_2648612_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.4	6.3e-136
WP_001103961.1|2648703_2649003_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
WP_001058500.1|2649003_2649228_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	2.9e-14
WP_162852000.1|2649220_2649367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481975.1|2649363_2649681_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
WP_031774941.1|2649694_2650336_-	Bro-N domain-containing protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	82.6	7.8e-97
WP_000448766.1|2650339_2650552_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	45.5	7.9e-06
WP_031774942.1|2650705_2651368_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031774943.1|2651380_2652553_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.2	1.5e-218
WP_047213652.1|2652621_2654238_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.9	1.2e-157
WP_031918283.1|2654313_2654598_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	3.6e-14
WP_000197641.1|2654772_2655516_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000120321.1|2655540_2656689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000522380.1|2656885_2657512_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_000867953.1|2657863_2658649_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_000046023.1|2659246_2659327_-	delta-hemolysin	NA	NA	NA	NA	NA
WP_001105716.1|2659617_2660181_+	accessory gene regulator AgrB	NA	NA	NA	NA	NA
WP_001094303.1|2660182_2660323_+	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_072358013.1|2660395_2661640_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
2660538:2660555	attR	TATTCATAATTATATTAT	NA	NA	NA	NA
WP_000688492.1|2661658_2662375_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
WP_031927410.1|2662446_2662554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047213656.1|2662741_2663701_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000141423.1|2663697_2665182_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.6	8.8e-19
WP_000790321.1|2665330_2666281_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001052272.1|2666461_2667712_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.7	2.4e-41
WP_000581074.1|2667921_2668146_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_072358016.1|2668205_2669234_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_001283612.1|2669590_2670226_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602075.1|2670478_2672407_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001791590.1|2672551_2672680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000106319.1|2672768_2674379_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	1.3e-20
WP_000159047.1|2674808_2675834_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000372755.1|2675826_2676291_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_001086751.1|2676263_2676926_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_014532666.1|2676906_2677341_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
