assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	1	349846-349930	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCACCCCAACTTGCAT	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|33aa|up_4|NZ_CP026957.1_345421_345520_+,NA	NA|165aa|up_9|NZ_CP026957.1_340438_340933_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP026957.1_341055_342003_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP026957.1_342090_343293_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP026957.1_343538_344039_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP026957.1_344179_345298_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|33aa|up_4|NZ_CP026957.1_345421_345520_+	NA	NA|352aa|up_3|NZ_CP026957.1_345613_346669_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP026957.1_346843_347533_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP026957.1_347837_348251_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP026957.1_348455_349754_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP026957.1_350207_351149_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP026957.1_351169_354367_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP026957.1_354816_356046_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP026957.1_356240_357098_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP026957.1_357097_358042_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP026957.1_358310_359279_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP026957.1_359300_361058_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP026957.1_361405_362767_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP026957.1_363114_364236_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP026957.1_364284_365553_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2	435653-435805	2,1	CRISPRCasFinder,PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AAGTTGGGGACGGGGCCCCAACACAGA,TGCAAGTTGGGGACGGGGCCCCAACACAGA--------GAAATTCG	27,46	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|43aa|up_8|NZ_CP026957.1_428394_428523_+,NA|49aa|up_3|NZ_CP026957.1_431559_431706_+,NA	NA|589aa|up_9|NZ_CP026957.1_426295_428062_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP026957.1_428394_428523_+	NA	NA|258aa|up_7|NZ_CP026957.1_428522_429296_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP026957.1_429456_430731_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP026957.1_430815_431238_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP026957.1_431337_431520_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP026957.1_431559_431706_+	NA	NA|338aa|up_2|NZ_CP026957.1_431942_432956_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP026957.1_433267_434410_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP026957.1_434410_435529_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP026957.1_436109_436778_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP026957.1_436779_439257_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP026957.1_439599_442230_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP026957.1_442292_442553_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP026957.1_442556_442985_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP026957.1_442999_443308_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP026957.1_443592_444231_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP026957.1_444233_445157_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP026957.1_445168_446437_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP026957.1_446436_447060_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	3	470074-470159	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTGGG	28	1	9	470102-470131|470102-470131|470102-470131|470102-470131|470102-470131|470102-470131|470102-470131|470102-470131|470102-470131	NZ_CP026957.1_2583034-2583005|NZ_CP026957.1_141518-141547|NZ_CP026957.1_141577-141606|NZ_CP026957.1_693660-693689|NZ_CP026957.1_1066588-1066617|NZ_CP026957.1_1361721-1361692|NZ_CP026957.1_1478888-1478859|NZ_CP026957.1_1992974-1992945|NZ_CP026957.1_2343333-2343362	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|190aa|up_9|NZ_CP026957.1_460644_461214_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP026957.1_461203_461788_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP026957.1_461788_462142_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP026957.1_462144_462861_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP026957.1_462900_463587_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP026957.1_463678_464140_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|734aa|up_3|NZ_CP026957.1_464144_466346_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP026957.1_466402_467377_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP026957.1_467421_467673_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP026957.1_468018_469842_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP026957.1_470465_471590_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP026957.1_471690_472668_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP026957.1_472699_473326_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP026957.1_473394_475227_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP026957.1_475362_476502_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP026957.1_476505_477444_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP026957.1_477445_478198_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP026957.1_478204_479551_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP026957.1_479843_480020_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP026957.1_480263_480947_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	4	995909-996160	1	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TNTNGGNNCCNCNCCAACTTGCATTGT	27	1	1	996105-996133	NZ_CP026957.1_28204-28176	NA	4	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|75aa|up_4|NZ_CP026957.1_992281_992506_-,NA|49aa|up_3|NZ_CP026957.1_992462_992609_-,NA|78aa|up_1|NZ_CP026957.1_994717_994951_+,NA|62aa|up_0|NZ_CP026957.1_995569_995755_+,NA|169aa|down_2|NZ_CP026957.1_997779_998286_-,NA|34aa|down_4|NZ_CP026957.1_999305_999407_+,NA|56aa|down_6|NZ_CP026957.1_1000235_1000403_-	NA|311aa|up_9|NZ_CP026957.1_986961_987894_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_CP026957.1_987916_988918_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_CP026957.1_989355_990081_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_CP026957.1_990175_990901_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_CP026957.1_991008_991725_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_CP026957.1_992281_992506_-	NA	NA|49aa|up_3|NZ_CP026957.1_992462_992609_-	NA	NA|320aa|up_2|NZ_CP026957.1_993281_994241_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_CP026957.1_994717_994951_+	NA	NA|62aa|up_0|NZ_CP026957.1_995569_995755_+	NA	NA|117aa|down_0|NZ_CP026957.1_996519_996870_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP026957.1_997023_997521_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP026957.1_997779_998286_-	NA	NA|133aa|down_3|NZ_CP026957.1_998956_999355_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|34aa|down_4|NZ_CP026957.1_999305_999407_+	NA	NA|106aa|down_5|NZ_CP026957.1_999724_1000042_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_CP026957.1_1000235_1000403_-	NA	NA|168aa|down_7|NZ_CP026957.1_1000530_1001034_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_CP026957.1_1001026_1001614_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_CP026957.1_1001625_1002426_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	5	1209919-1210000	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP026957.1_1193962_1194865_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP026957.1_1195030_1198684_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP026957.1_1198684_1202161_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP026957.1_1202320_1202896_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP026957.1_1202911_1203436_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP026957.1_1203440_1204016_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP026957.1_1204340_1205672_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP026957.1_1206022_1207228_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP026957.1_1207217_1208597_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP026957.1_1208838_1209768_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP026957.1_1210157_1211402_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP026957.1_1211510_1212701_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP026957.1_1213008_1214136_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP026957.1_1214497_1214875_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP026957.1_1215289_1215883_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP026957.1_1215946_1216330_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP026957.1_1216460_1218866_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP026957.1_1218858_1219287_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP026957.1_1219286_1219628_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP026957.1_1219620_1221117_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	6	1258742-1258823	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1258766-1258799	NZ_CP026957.1_693656-693689	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|417aa|up_9|NZ_CP026957.1_1249226_1250477_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP026957.1_1250582_1251890_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP026957.1_1251987_1252749_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP026957.1_1253076_1253928_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP026957.1_1254160_1254355_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP026957.1_1254708_1255530_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP026957.1_1255547_1256243_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP026957.1_1256235_1257261_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP026957.1_1257510_1257807_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP026957.1_1257799_1258186_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP026957.1_1258926_1259805_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP026957.1_1259983_1260364_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP026957.1_1260521_1260878_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP026957.1_1261021_1261342_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP026957.1_1261491_1262031_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP026957.1_1262113_1262830_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP026957.1_1262977_1263400_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP026957.1_1263798_1264293_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP026957.1_1264447_1265065_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|194aa|down_9|NZ_CP026957.1_1265137_1265719_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	7	1320626-1320706	6	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	12	1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680|1320652-1320680	NZ_CP026957.1_292571-292543|NZ_CP026957.1_650740-650712|NZ_CP026957.1_908078-908050|NZ_CP026957.1_1766595-1766567|NZ_CP026957.1_470061-470089|NZ_CP026957.1_991935-991907|NZ_CP026957.1_992046-992018|NZ_CP026957.1_1210013-1209985|NZ_CP026957.1_1258729-1258757|NZ_CP026957.1_1315218-1315246|NZ_CP026957.1_1859565-1859593|NZ_CP026957.1_1967699-1967671	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|36aa|down_5|NZ_CP026957.1_1328147_1328255_-,NA|35aa|down_7|NZ_CP026957.1_1329687_1329792_-	NA|301aa|up_9|NZ_CP026957.1_1309641_1310544_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP026957.1_1310786_1311374_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP026957.1_1311946_1312891_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP026957.1_1313001_1313997_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP026957.1_1313993_1314905_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP026957.1_1315669_1316605_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP026957.1_1316671_1318111_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP026957.1_1318118_1318604_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP026957.1_1318611_1319451_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP026957.1_1319456_1320389_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP026957.1_1320995_1323842_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP026957.1_1323849_1325835_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP026957.1_1326103_1326340_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP026957.1_1326336_1326987_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP026957.1_1327160_1328000_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP026957.1_1328147_1328255_-	NA	NA|370aa|down_6|NZ_CP026957.1_1328408_1329519_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP026957.1_1329687_1329792_-	NA	NA|844aa|down_8|NZ_CP026957.1_1329833_1332365_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP026957.1_1332778_1333351_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	8	1844212-1844402	2	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCAC	24	3	31	1844236-1844267|1844236-1844267|1844236-1844267|1844236-1844267|1844236-1844267|1844236-1844267|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844292-1844322|1844347-1844378|1844347-1844378|1844347-1844378|1844347-1844378|1844347-1844378	NZ_CP026957.1_907943-907974|NZ_CP026957.1_907999-908030|NZ_CP026957.1_991967-991998|NZ_CP026957.1_455467-455498|NZ_CP026957.1_2178087-2178056|NZ_CP026957.1_470027-469996|NZ_CP026957.1_141675-141645|NZ_CP026957.1_650775-650805|NZ_CP026957.1_650833-650863|NZ_CP026957.1_693583-693553|NZ_CP026957.1_783477-783507|NZ_CP026957.1_1092622-1092592|NZ_CP026957.1_1092738-1092708|NZ_CP026957.1_1209990-1210020|NZ_CP026957.1_1258752-1258722|NZ_CP026957.1_1315183-1315153|NZ_CP026957.1_1967676-1967706|NZ_CP026957.1_1992992-1993022|NZ_CP026957.1_2583109-2583139|NZ_CP026957.1_435824-435794|NZ_CP026957.1_650717-650747|NZ_CP026957.1_1190445-1190415|NZ_CP026957.1_1859588-1859558|NZ_CP026957.1_2343258-2343228|NZ_CP026957.1_992023-992053|NZ_CP026957.1_1315241-1315211|NZ_CP026957.1_907943-907974|NZ_CP026957.1_907999-908030|NZ_CP026957.1_991967-991998|NZ_CP026957.1_455467-455498|NZ_CP026957.1_2178087-2178056	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|131aa|up_6|NZ_CP026957.1_1838660_1839053_-,NA|45aa|up_1|NZ_CP026957.1_1843003_1843138_-,NA	NA|317aa|up_9|NZ_CP026957.1_1834654_1835605_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|331aa|up_8|NZ_CP026957.1_1835930_1836923_-	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|459aa|up_7|NZ_CP026957.1_1837156_1838533_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|131aa|up_6|NZ_CP026957.1_1838660_1839053_-	NA	NA|333aa|up_5|NZ_CP026957.1_1839433_1840432_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|294aa|up_4|NZ_CP026957.1_1840663_1841545_+	pfam06800, Sugar_transport, Sugar transport protein	NA|135aa|up_3|NZ_CP026957.1_1841559_1841964_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|305aa|up_2|NZ_CP026957.1_1841991_1842906_+	TIGR02152, Putative_ribokinase, ribokinase	NA|45aa|up_1|NZ_CP026957.1_1843003_1843138_-	NA	NA|254aa|up_0|NZ_CP026957.1_1843156_1843918_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|479aa|down_0|NZ_CP026957.1_1844465_1845902_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|264aa|down_1|NZ_CP026957.1_1845917_1846709_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|235aa|down_2|NZ_CP026957.1_1846857_1847562_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|234aa|down_3|NZ_CP026957.1_1847669_1848371_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|down_4|NZ_CP026957.1_1848363_1848807_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|down_5|NZ_CP026957.1_1848919_1849660_-	PRK14084, PRK14084, DNA-binding response regulator	NA|585aa|down_6|NZ_CP026957.1_1849662_1851417_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|down_7|NZ_CP026957.1_1851660_1852335_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|down_8|NZ_CP026957.1_1852478_1854200_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|down_9|NZ_CP026957.1_1854232_1855921_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	9	1967602-1967686	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1967628-1967660|1967628-1967660|1967628-1967660	NZ_CP026957.1_141606-141574|NZ_CP026957.1_693689-693657|NZ_CP026957.1_1066617-1066585	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|68aa|up_0|NZ_CP026957.1_1967336_1967540_+,NA	NA|2392aa|up_9|NZ_CP026957.1_1951741_1958917_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_CP026957.1_1959363_1960614_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_CP026957.1_1960999_1962025_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_CP026957.1_1962198_1962558_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_CP026957.1_1962774_1963806_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_CP026957.1_1963818_1964580_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|325aa|up_3|NZ_CP026957.1_1964576_1965551_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_CP026957.1_1965564_1966305_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_CP026957.1_1966646_1967159_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_CP026957.1_1967336_1967540_+	NA	NA|320aa|down_0|NZ_CP026957.1_1967834_1968794_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_CP026957.1_1969439_1970927_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_CP026957.1_1971353_1971737_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_CP026957.1_1971743_1972070_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_CP026957.1_1972134_1973280_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_CP026957.1_1973356_1974619_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_CP026957.1_1974672_1975560_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_CP026957.1_1975559_1976117_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_CP026957.1_1976127_1977333_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|413aa|down_9|NZ_CP026957.1_1977366_1978605_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	10	2177928-2178072	2	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGG---CGGGGCCCCAACATAGAAGCTGGCGGAAAG	43	1	19	2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053|2178038-2178053	NZ_CP026957.1_2178073-2178088|NZ_CP026957.1_132252-132267|NZ_CP026957.1_470013-470028|NZ_CP026957.1_693628-693643|NZ_CP026957.1_779078-779093|NZ_CP026957.1_783432-783417|NZ_CP026957.1_907957-907942|NZ_CP026957.1_908013-907998|NZ_CP026957.1_908127-908112|NZ_CP026957.1_991981-991966|NZ_CP026957.1_992094-992079|NZ_CP026957.1_1092667-1092682|NZ_CP026957.1_1258470-1258485|NZ_CP026957.1_1308078-1308093|NZ_CP026957.1_1844194-1844179|NZ_CP026957.1_1859517-1859532|NZ_CP026957.1_1859789-1859804|NZ_CP026957.1_2343303-2343318|NZ_CP026957.1_2583064-2583049	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|NZ_CP026957.1_2174887_2175067_+,NA	NA|205aa|up_9|NZ_CP026957.1_2168605_2169220_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP026957.1_2169212_2170463_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP026957.1_2170478_2171492_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP026957.1_2171460_2172039_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP026957.1_2172035_2172614_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP026957.1_2172606_2173311_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP026957.1_2173307_2174066_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP026957.1_2174062_2174695_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP026957.1_2174887_2175067_+	NA	NA|681aa|up_0|NZ_CP026957.1_2175787_2177830_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP026957.1_2178275_2179328_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP026957.1_2179314_2180187_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP026957.1_2180183_2180489_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP026957.1_2180452_2181691_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP026957.1_2181854_2182415_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP026957.1_2183263_2183926_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP026957.1_2183942_2184635_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP026957.1_2184631_2185399_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP026957.1_2185633_2186134_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP026957.1_2186136_2186613_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	11	2310377-2310484	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|163aa|up_7|NZ_CP026957.1_2301878_2302367_+,NA|64aa|down_1|NZ_CP026957.1_2313300_2313492_-,NA|56aa|down_4|NZ_CP026957.1_2316175_2316343_+	NA|604aa|up_9|NZ_CP026957.1_2298764_2300576_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|256aa|up_8|NZ_CP026957.1_2300936_2301704_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|163aa|up_7|NZ_CP026957.1_2301878_2302367_+	NA	NA|498aa|up_6|NZ_CP026957.1_2302359_2303853_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_5|NZ_CP026957.1_2303858_2304986_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|288aa|up_4|NZ_CP026957.1_2305022_2305886_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|503aa|up_3|NZ_CP026957.1_2305897_2307406_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|385aa|up_2|NZ_CP026957.1_2307832_2308987_+	PRK08068, PRK08068, transaminase; Reviewed	NA|333aa|up_1|NZ_CP026957.1_2309009_2310008_+	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|69aa|up_0|NZ_CP026957.1_2310097_2310304_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|803aa|down_0|NZ_CP026957.1_2310652_2313061_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|64aa|down_1|NZ_CP026957.1_2313300_2313492_-	NA	NA|200aa|down_2|NZ_CP026957.1_2313730_2314330_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|515aa|down_3|NZ_CP026957.1_2314519_2316064_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|56aa|down_4|NZ_CP026957.1_2316175_2316343_+	NA	NA|183aa|down_5|NZ_CP026957.1_2316418_2316967_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|830aa|down_6|NZ_CP026957.1_2317111_2319601_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|76aa|down_7|NZ_CP026957.1_2319816_2320044_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|665aa|down_8|NZ_CP026957.1_2320055_2322050_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|57aa|down_9|NZ_CP026957.1_2322062_2322233_+	pfam12669, P12, Virus attachment protein p12 family
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	12	2450429-2450507	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTTCTACAGACAATGCAAGTTGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|36aa|up_0|NZ_CP026957.1_2450014_2450122_+,NA|56aa|down_2|NZ_CP026957.1_2454557_2454725_+	NA|693aa|up_9|NZ_CP026957.1_2439837_2441916_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP026957.1_2442053_2443463_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP026957.1_2443748_2444555_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP026957.1_2444617_2445274_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP026957.1_2445386_2445860_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP026957.1_2445982_2447194_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP026957.1_2447375_2448035_-	PHA02562, 46, endonuclease subunit; Provisional	NA|381aa|up_2|NZ_CP026957.1_2448094_2449237_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP026957.1_2449494_2449881_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP026957.1_2450014_2450122_+	NA	NA|588aa|down_0|NZ_CP026957.1_2450805_2452569_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP026957.1_2452593_2454327_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_CP026957.1_2454557_2454725_+	NA	NA|229aa|down_3|NZ_CP026957.1_2454779_2455466_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_CP026957.1_2455443_2456802_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_CP026957.1_2456803_2457811_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_CP026957.1_2457788_2458904_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_CP026957.1_2458914_2459607_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_CP026957.1_2459617_2460085_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_CP026957.1_2460136_2461114_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	13	2617309-2617394	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	1	2617339-2617364	NZ_CP026957.1_992124-992099	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP026957.1_2617412_2617583_-,NA|84aa|down_5|NZ_CP026957.1_2620722_2620974_-,NA|106aa|down_8|NZ_CP026957.1_2626095_2626413_-,NA|55aa|down_9|NZ_CP026957.1_2626657_2626822_-	NA|202aa|up_9|NZ_CP026957.1_2610167_2610773_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP026957.1_2610942_2611947_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP026957.1_2611977_2612484_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP026957.1_2612485_2612980_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP026957.1_2613042_2614302_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP026957.1_2614298_2614784_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP026957.1_2614797_2615244_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP026957.1_2615249_2615483_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP026957.1_2615489_2616089_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP026957.1_2616108_2617131_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP026957.1_2617412_2617583_-	NA	NA|117aa|down_1|NZ_CP026957.1_2617708_2618059_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP026957.1_2618160_2619372_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP026957.1_2619364_2619805_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP026957.1_2619966_2620731_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP026957.1_2620722_2620974_-	NA	NA|422aa|down_6|NZ_CP026957.1_2621362_2622628_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP026957.1_2622744_2625912_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP026957.1_2626095_2626413_-	NA	NA|55aa|down_9|NZ_CP026957.1_2626657_2626822_-	NA
GCF_001019125.2_ASM101912v2	NZ_CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	14	2728820-2728901	11	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|53aa|up_1|NZ_CP026957.1_2727542_2727701_-,NA|35aa|up_0|NZ_CP026957.1_2728380_2728485_+,NA|364aa|down_0|NZ_CP026957.1_2728917_2730009_-,NA|77aa|down_5|NZ_CP026957.1_2733798_2734029_+	NA|452aa|up_9|NZ_CP026957.1_2707735_2709091_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_8|NZ_CP026957.1_2717201_2718308_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP026957.1_2718307_2718742_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP026957.1_2718753_2720886_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP026957.1_2720920_2722459_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP026957.1_2723139_2724945_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP026957.1_2725176_2725959_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP026957.1_2726026_2726884_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP026957.1_2727542_2727701_-	NA	NA|35aa|up_0|NZ_CP026957.1_2728380_2728485_+	NA	NA|364aa|down_0|NZ_CP026957.1_2728917_2730009_-	NA	NA|327aa|down_1|NZ_CP026957.1_2730274_2731255_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP026957.1_2731256_2731577_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP026957.1_2731728_2732394_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP026957.1_2732829_2733768_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP026957.1_2733798_2734029_+	NA	NA|458aa|down_6|NZ_CP026957.1_2734700_2736074_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP026957.1_2736531_2736945_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP026957.1_2737144_2737588_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP026957.1_2737708_2738419_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
