assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001019675.1_ASM101967v1	NZ_CP007561	Streptococcus pyogenes strain NGAS596, complete genome	1	573059-573421	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,csa3	 Type I-U?,Type I-U,Type I-C	AGTCTCACCCTTCATGGGTGAGTGGATTGAAAT,AGTCTCACCCTTCATGGGTGAGTGGATTGAAA,AGTCTCACCCTTCATGGGTGAGTGGATTGAAAT	33,32,33	0	0	NA	NA	I-C:I-C:I-C	5,5,5	5	TypeI-U?,TypeI-U,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,csa3	NA,NA	NA|67aa|up_9|NZ_CP007561.1_561327_561528_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|NZ_CP007561.1_561524_562088_+	pfam13238, AAA_18, AAA domain	NA|883aa|up_7|NZ_CP007561.1_562089_564738_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_CP007561.1_564891_567300_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP007561.1_567432_568161_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP007561.1_568160_570056_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|NZ_CP007561.1_570060_570909_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_CP007561.1_570910_571585_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP007561.1_571581_572607_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP007561.1_572617_572911_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_CP007561.1_573580_574291_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_CP007561.1_574303_574927_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_CP007561.1_574969_576076_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_CP007561.1_576163_576904_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|NZ_CP007561.1_576900_578634_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|NZ_CP007561.1_578706_579786_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|NZ_CP007561.1_579799_580516_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|NZ_CP007561.1_580682_581156_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|NZ_CP007561.1_581297_581978_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|NZ_CP007561.1_582251_583487_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCF_001019675.1_ASM101967v1	NZ_CP007561	Streptococcus pyogenes strain NGAS596, complete genome	2	759207-759307	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,csa3	NA|262aa|up_6|NZ_CP007561.1_750590_751376_-,NA	NA|755aa|up_9|NZ_CP007561.1_745967_748232_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|NZ_CP007561.1_748488_749109_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|NZ_CP007561.1_749849_750464_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_CP007561.1_750590_751376_-	NA	NA|233aa|up_5|NZ_CP007561.1_751385_752084_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_CP007561.1_752083_752455_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_CP007561.1_752639_755750_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_CP007561.1_755829_756843_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_CP007561.1_756905_758408_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_CP007561.1_758625_759183_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_CP007561.1_759358_761173_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_CP007561.1_761368_761704_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_CP007561.1_761810_762452_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_CP007561.1_762461_763091_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_CP007561.1_763106_763943_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_CP007561.1_764312_765086_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_CP007561.1_765455_766691_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_CP007561.1_766810_768133_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_CP007561.1_768661_770980_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_CP007561.1_771341_771590_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_001019675.1_ASM101967v1	NZ_CP007561	Streptococcus pyogenes strain NGAS596, complete genome	3	958817-958976	2	PILER-CR	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,csa3	Orphan	GTTTTGGGACCATTCAAAACAGCATAGCT	29	0	0	NA	NA	II-A	2	2	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,csa3	NA|35aa|up_3|NZ_CP007561.1_956836_956941_-,NA|44aa|up_0|NZ_CP007561.1_958440_958572_-,NA|214aa|down_4|NZ_CP007561.1_962486_963128_-	NA|164aa|up_9|NZ_CP007561.1_950447_950939_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_8|NZ_CP007561.1_950965_951391_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_7|NZ_CP007561.1_951597_952617_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|152aa|up_6|NZ_CP007561.1_952746_953202_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|471aa|up_5|NZ_CP007561.1_953371_954784_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_4|NZ_CP007561.1_954944_956777_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_3|NZ_CP007561.1_956836_956941_-	NA	NA|378aa|up_2|NZ_CP007561.1_956945_958079_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|83aa|up_1|NZ_CP007561.1_958124_958373_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|44aa|up_0|NZ_CP007561.1_958440_958572_-	NA	NA|211aa|down_0|NZ_CP007561.1_959135_959768_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_1|NZ_CP007561.1_959767_960532_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_2|NZ_CP007561.1_960531_961284_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_3|NZ_CP007561.1_961293_962424_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_4|NZ_CP007561.1_962486_963128_-	NA	NA|452aa|down_5|NZ_CP007561.1_963251_964607_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|319aa|down_6|NZ_CP007561.1_964660_965617_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_7|NZ_CP007561.1_965613_966465_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|446aa|down_8|NZ_CP007561.1_966577_967915_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|264aa|down_9|NZ_CP007561.1_967914_968706_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]
