The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	705989	713810	2725654		Hokovirus(16.67%)	10	NA	NA
WP_000244417.1|705989_707045_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
WP_000149344.1|707044_707731_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|707705_708179_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|708520_708961_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|709240_709825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|709923_710637_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|710640_711060_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|711061_711730_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|712081_712675_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217802.1|712658_713810_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 2
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	729487	740456	2725654		uncultured_Caudovirales_phage(62.5%)	10	NA	NA
WP_000193751.1|729487_730993_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|731333_731834_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068494.1|731853_732720_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|733520_733919_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|733881_735987_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|736104_737076_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|737589_737745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|737783_738755_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|738741_739698_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|739694_740456_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	982536	991009	2725654		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|982536_983019_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|983005_984130_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|984133_984838_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|984837_985101_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|985102_985774_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|985766_987956_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_047928246.1|987934_989419_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	5.5e-45
WP_000030811.1|989411_990440_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_047928249.1|990442_991009_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	5.5e-30
>prophage 4
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	1224971	1281270	2725654	tail,holin,portal,capsid,tRNA,head,plate,terminase	Staphylococcus_phage(52.17%)	64	NA	NA
WP_001001521.1|1224971_1226516_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|1226516_1226882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000842277.1|1226908_1227400_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073352.1|1227702_1230321_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
WP_000516264.1|1230333_1232343_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
WP_001077635.1|1232348_1232891_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103743.1|1233365_1234184_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_000417369.1|1234312_1235809_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218596.1|1235966_1237640_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_000136950.1|1237789_1238704_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001548613.1|1238721_1239657_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561358.1|1239671_1239905_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448078.1|1240126_1240603_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_000068625.1|1240714_1241953_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652047.1|1241971_1243210_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1243452_1243821_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|1243839_1245180_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_031587096.1|1246498_1247194_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	1.4e-06
WP_000554410.1|1247205_1247589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1247735_1248128_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_001209962.1|1248295_1248514_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1248540_1248816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000800341.1|1249239_1249446_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1249506_1250190_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_047928438.1|1250288_1250450_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786993.1|1250536_1250854_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786634.1|1250843_1251110_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1251114_1251651_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_000907597.1|1251651_1252431_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
WP_072433566.1|1252511_1253006_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	6.4e-83
WP_000946005.1|1253922_1254213_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714411.1|1254227_1254386_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
WP_000860978.1|1254391_1254703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031587073.1|1254695_1255226_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	2.3e-22
WP_106905708.1|1255356_1255464_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	1.2e-07
WP_000835355.1|1255460_1255925_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_000653931.1|1256201_1256690_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
WP_000090969.1|1256842_1257271_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207538.1|1257257_1258532_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
WP_000158570.1|1258544_1259993_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
WP_078064796.1|1260522_1261512_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	68.9	3.8e-50
WP_031811279.1|1261711_1261840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429653.1|1261806_1262385_+	DUF4355 domain-containing protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
WP_000200243.1|1262403_1263315_+	hypothetical protein	NA	Q4ZE33	Staphylococcus_virus	59.7	6.5e-97
WP_000104116.1|1263392_1263866_+	hypothetical protein	NA	A0A2H4J9T3	uncultured_Caudovirales_phage	31.6	9.7e-12
WP_001010139.1|1263881_1264208_+|head,tail	phage head-tail connector protein	head,tail	Q4ZE31	Staphylococcus_virus	56.4	2.1e-26
WP_001106897.1|1264207_1264513_+	hypothetical protein	NA	Q4ZE30	Staphylococcus_virus	40.6	6.4e-17
WP_001198140.1|1264513_1264864_+	hypothetical protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
WP_000680037.1|1264873_1265269_+	hypothetical protein	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
WP_000276225.1|1265280_1265880_+|tail	phage major tail protein, TP901-1 family	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
WP_000256347.1|1265941_1266286_+	hypothetical protein	NA	A0A1J0MFH0	Staphylococcus_phage	58.9	7.7e-35
WP_001808026.1|1266336_1266690_+	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	72.3	1.7e-37
WP_047928439.1|1266701_1269872_+	membrane protein	NA	Q4ZE24	Staphylococcus_virus	54.5	1.6e-94
WP_000350618.1|1269886_1270822_+|tail	phage tail protein	tail	A0A1J0MF79	Staphylococcus_phage	55.9	2.1e-98
WP_047928440.1|1270830_1272516_+	hypothetical protein	NA	Q4ZE19	Staphylococcus_virus	46.5	1.4e-108
WP_000700623.1|1272533_1273547_+	SGNH/GDSL hydrolase family protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.6	6.5e-98
WP_006190235.1|1273565_1274963_+|plate	phage baseplate upper protein	plate	A0A1J0MFK8	Staphylococcus_phage	44.7	2.6e-105
WP_000438657.1|1274975_1275365_+|holin	phage holin family protein	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	5.3e-16
WP_001140244.1|1275429_1276350_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.8	1.0e-65
WP_001808024.1|1276818_1277016_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	3.7e-10
WP_001808025.1|1277236_1278172_+	Abi family protein	NA	A0A059NT88	Lactococcus_phage	44.0	5.3e-70
WP_000477485.1|1278619_1279036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076692498.1|1279462_1279687_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	75.4	1.6e-20
WP_001065797.1|1279929_1281270_+|capsid	minor capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	58.9	1.1e-140
>prophage 5
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	1540660	1548990	2725654	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_031775221.1|1540660_1541446_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.0e-18
WP_000924220.1|1541571_1542462_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062177.1|1542471_1543818_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683936.1|1543931_1545032_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_023914705.1|1545034_1545712_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1545842_1546949_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217244.1|1547172_1548990_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 6
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	1616707	1625750	2725654	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1616707_1617226_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594985.1|1617247_1619521_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
WP_000749795.1|1619723_1622003_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1622277_1622538_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1622556_1623696_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1623718_1624744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1624745_1625750_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	1751343	1797062	2725654	tRNA,protease	Staphylococcus_phage(91.67%)	43	NA	NA
WP_047928507.1|1751343_1757904_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.2	2.1e-298
WP_000836465.1|1758229_1758541_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108728.1|1758562_1760977_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1761267_1762449_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1762558_1763512_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1763508_1764072_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1764191_1764593_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1765163_1765991_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1765993_1766113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196345.1|1766224_1767226_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
WP_001008549.1|1767347_1767812_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159035.1|1767824_1769006_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493888.1|1769016_1769649_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_025174259.1|1769655_1770687_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
WP_001261669.1|1771179_1772682_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221177.1|1773204_1773519_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1773518_1774811_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1774828_1775224_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1775518_1776373_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1776648_1776873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047928513.1|1777071_1777542_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.7	3.0e-82
WP_001153742.1|1777654_1778098_+	competence protein ComK	NA	NA	NA	NA	NA
WP_047928515.1|1778084_1778528_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	9.2e-57
WP_001168907.1|1778823_1779459_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1779898_1780612_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_047928516.1|1780871_1781174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1781429_1781795_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1781791_1782145_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453298.1|1782528_1783362_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1783573_1784482_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1784606_1785800_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1786171_1787764_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_016169057.1|1788141_1788888_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_078098768.1|1788892_1789366_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.4e-82
WP_000718110.1|1789431_1789689_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
WP_000778516.1|1789685_1790687_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
WP_000348379.1|1790691_1792170_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
WP_076692541.1|1792328_1792784_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
WP_078104171.1|1793086_1793737_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	83.8	1.6e-41
WP_000070649.1|1793817_1794813_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
WP_000669028.1|1794886_1795513_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
WP_031775015.1|1795557_1796283_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	33.5	4.0e-25
WP_000764922.1|1796309_1797062_+	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
>prophage 8
NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2725654	1897335	2016409	2725654	tail,holin,protease,capsid,portal,tRNA,head,integrase,terminase	Staphylococcus_phage(80.49%)	126	2000101:2000120	2014431:2014450
WP_000545370.1|1897335_1898763_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027918.1|1898775_1900233_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1900234_1900537_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1900903_1902442_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1902530_1903730_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_047928545.1|1903742_1905746_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	35.9	3.7e-113
WP_000992921.1|1905749_1907942_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272071.1|1907938_1908631_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1908802_1909105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047928546.1|1909213_1910509_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_047928547.1|1911368_1912535_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1912565_1912892_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1913142_1913316_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1913296_1913899_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1914169_1914991_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1914983_1916453_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1916636_1917713_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1917732_1918527_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1918598_1918706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323153.1|1918716_1920279_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275707.1|1920482_1921580_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|1921951_1922512_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1922564_1923494_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1923686_1923860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1923911_1925291_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1925410_1926439_-	lactonase family protein	NA	NA	NA	NA	NA
WP_020977408.1|1926897_1927278_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_020977409.1|1927267_1929025_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_020977410.1|1929131_1929977_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	1.3e-30
WP_042908841.1|1930285_1930696_+	hypothetical protein	NA	U3PG23	Staphylococcus_phage	50.4	1.4e-27
WP_020977412.1|1930738_1932109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031875823.1|1932485_1934549_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_047928551.1|1934551_1935664_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	32.2	7.8e-12
WP_000267034.1|1936725_1936899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|1937349_1938390_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1938446_1939289_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1939285_1939843_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1939902_1940427_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1940547_1941111_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_047928552.1|1941176_1941917_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1941916_1942789_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645728.1|1942785_1943466_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000691584.1|1944361_1944742_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1945000_1945177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1945717_1947004_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_053040876.1|1947327_1949376_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1950333_1950513_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1950823_1951084_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1951136_1951487_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|1952169_1952619_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000920041.1|1953696_1954188_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|1954378_1955134_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1955145_1955400_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|1955451_1955559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072357969.1|1955611_1955788_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_000340977.1|1955930_1956305_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|1956360_1956648_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|1956693_1956846_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582177.1|1956838_1960621_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.8	0.0e+00
WP_000567408.1|1960636_1962121_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_047928553.1|1962117_1966647_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	99.9	0.0e+00
WP_001096355.1|1966891_1967242_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|1967291_1967516_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|1967557_1968202_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1968202_1968610_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|1968606_1969011_-	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1969007_1969370_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1969353_1969638_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1969627_1969912_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|1969931_1971077_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000642728.1|1971100_1971838_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1971821_1973009_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1973024_1974686_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1974682_1975027_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|1975157_1975457_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590124.1|1975688_1976105_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	99.3	3.7e-76
WP_000265042.1|1976132_1976333_-	DUF1514 family protein	NA	A0A2I6PDJ9	Staphylococcus_phage	100.0	1.4e-28
WP_000370292.1|1976452_1976707_-	DUF1024 family protein	NA	A0A2I6PDI5	Staphylococcus_phage	100.0	6.5e-39
WP_001105620.1|1976699_1976984_-	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	100.0	9.4e-47
WP_000982708.1|1976980_1977430_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_001126836.1|1977494_1977743_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
WP_031929144.1|1977743_1978115_-	phage protein	NA	A0A2I6PDG3	Staphylococcus_phage	92.7	9.8e-52
WP_000401964.1|1978127_1978532_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|1978540_1978759_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148301.1|1978765_1979650_-	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.9	3.1e-136
WP_033855319.1|1979802_1980150_-	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	100.0	2.5e-57
WP_072399433.1|1980150_1980720_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	8.4e-87
WP_000138475.1|1980848_1981769_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700557.1|1981770_1983714_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	98.0	0.0e+00
WP_001205732.1|1983722_1983986_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_047928555.1|1983994_1984255_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	98.8	2.9e-42
WP_000066020.1|1984347_1984509_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|1984505_1984826_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|1984884_1985517_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_024928163.1|1985914_1986667_-	oxidoreductase	NA	G4KNN1	Staphylococcus_phage	99.2	3.3e-139
WP_000351243.1|1986723_1987263_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|1987286_1987547_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338186.1|1987564_1987789_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_001208482.1|1987947_1988718_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000694772.1|1988917_1989100_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_001013104.1|1989135_1989282_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191460.1|1989278_1989893_-	hypothetical protein	NA	A0A2I6PDE9	Staphylococcus_phage	100.0	1.3e-106
WP_000857176.1|1990000_1991038_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595394.1|1992156_1993173_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	8.7e-26
WP_031588767.1|1993194_1994250_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
WP_000206640.1|1994684_1995908_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|1996279_1997125_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|1997186_1998098_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045078.1|1998258_1999566_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
2000101:2000120	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_001035619.1|2001206_2001764_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	74.3	8.6e-68
WP_031792985.1|2001841_2002642_-	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.9	2.3e-53
WP_000801979.1|2003798_2004767_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_049949340.1|2005187_2005676_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	41.8	9.3e-26
WP_047928557.1|2005858_2006917_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_047928558.1|2006903_2007110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081424.1|2007334_2007679_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_047928559.1|2008099_2010463_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.2	6.7e-146
WP_001103961.1|2010554_2010854_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
WP_031912616.1|2010854_2011079_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	61.8	6.8e-16
WP_031912617.1|2011214_2011532_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	2.3e-49
WP_031912618.1|2011545_2012187_-	Bro-N domain-containing protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	83.6	1.0e-96
WP_047928560.1|2012183_2012426_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_049949256.1|2012558_2013182_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031912621.1|2013191_2014364_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	94.6	2.0e-212
WP_000240642.1|2014432_2016049_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
2014431:2014450	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2016124_2016409_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
