assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001027045.1_ASM102704v1	NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	1	133505-133589	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	133531-133563|133531-133563	NZ_CP011528.1_1404579-1404547|NZ_CP011528.1_2444943-2444975	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|402aa|up_9|NZ_CP011528.1_122651_123857_+,NA|68aa|down_0|NZ_CP011528.1_133650_133854_-	NA|402aa|up_9|NZ_CP011528.1_122651_123857_+	NA	NA|402aa|up_8|NZ_CP011528.1_123857_125063_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP011528.1_125073_125631_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP011528.1_125630_126518_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP011528.1_126571_127834_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP011528.1_127910_129056_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP011528.1_129120_129447_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP011528.1_129453_129837_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP011528.1_130263_131751_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP011528.1_132396_133356_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP011528.1_133650_133854_-	NA	NA|171aa|down_1|NZ_CP011528.1_134032_134545_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP011528.1_134886_135627_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP011528.1_135640_136615_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP011528.1_136611_137373_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP011528.1_137385_138417_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP011528.1_138633_138993_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP011528.1_139166_140192_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP011528.1_140577_141828_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP011528.1_142274_149450_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001027045.1_ASM102704v1	NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	2	241993-242083	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	33	1	24	242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050|242026-242050	NZ_CP011528.1_133504-133480|NZ_CP011528.1_334236-334212|NZ_CP011528.1_334291-334267|NZ_CP011528.1_768982-769006|NZ_CP011528.1_774416-774440|NZ_CP011528.1_980983-981007|NZ_CP011528.1_1316292-1316268|NZ_CP011528.1_1404664-1404688|NZ_CP011528.1_1886004-1886028|NZ_CP011528.1_1887405-1887429|NZ_CP011528.1_2241672-2241696|NZ_CP011528.1_2444858-2444834|NZ_CP011528.1_2444916-2444892|NZ_CP011528.1_257269-257245|NZ_CP011528.1_885028-885052|NZ_CP011528.1_1081823-1081799|NZ_CP011528.1_1081934-1081910|NZ_CP011528.1_1320585-1320609|NZ_CP011528.1_1601500-1601524|NZ_CP011528.1_1601617-1601641|NZ_CP011528.1_1691363-1691339|NZ_CP011528.1_2037161-2037137|NZ_CP011528.1_2252521-2252545|NZ_CP011528.1_2526234-2526258	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|49aa|up_4|NZ_CP011528.1_236262_236409_+,NA	NA|699aa|up_9|NZ_CP011528.1_230852_232949_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|156aa|up_8|NZ_CP011528.1_232933_233401_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|93aa|up_7|NZ_CP011528.1_233423_233702_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|420aa|up_6|NZ_CP011528.1_233928_235188_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|352aa|up_5|NZ_CP011528.1_235205_236261_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|49aa|up_4|NZ_CP011528.1_236262_236409_+	NA	NA|348aa|up_3|NZ_CP011528.1_236432_237476_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|239aa|up_2|NZ_CP011528.1_238003_238720_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|up_1|NZ_CP011528.1_238712_239738_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|565aa|up_0|NZ_CP011528.1_239759_241454_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|390aa|down_0|NZ_CP011528.1_242504_243674_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|239aa|down_1|NZ_CP011528.1_243949_244666_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|down_2|NZ_CP011528.1_244658_245684_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|down_3|NZ_CP011528.1_245705_247394_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|down_4|NZ_CP011528.1_247426_249148_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|down_5|NZ_CP011528.1_249291_249966_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|down_6|NZ_CP011528.1_250225_251965_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|down_7|NZ_CP011528.1_251967_252708_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|down_8|NZ_CP011528.1_252820_253264_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|down_9|NZ_CP011528.1_253256_253958_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional
GCF_001027045.1_ASM102704v1	NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	3	1851873-1852000	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_6|NZ_CP011528.1_1843798_1844194_-,NA|51aa|up_5|NZ_CP011528.1_1845029_1845182_-,NA|31aa|down_4|NZ_CP011528.1_1864791_1864884_-	NA|371aa|up_9|NZ_CP011528.1_1839670_1840783_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|274aa|up_8|NZ_CP011528.1_1840945_1841767_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_7|NZ_CP011528.1_1842218_1843604_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_6|NZ_CP011528.1_1843798_1844194_-	NA	NA|51aa|up_5|NZ_CP011528.1_1845029_1845182_-	NA	NA|200aa|up_4|NZ_CP011528.1_1845206_1845806_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_3|NZ_CP011528.1_1845964_1846435_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_2|NZ_CP011528.1_1846439_1847582_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_1|NZ_CP011528.1_1847717_1848446_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_0|NZ_CP011528.1_1848432_1849890_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|149aa|down_0|NZ_CP011528.1_1859989_1860436_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|152aa|down_1|NZ_CP011528.1_1861489_1861945_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_2|NZ_CP011528.1_1862025_1863315_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_3|NZ_CP011528.1_1863607_1864702_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_4|NZ_CP011528.1_1864791_1864884_-	NA	NA|579aa|down_5|NZ_CP011528.1_1864892_1866629_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP011528.1_1866919_1867462_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP011528.1_1867763_1868801_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP011528.1_1868952_1869930_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP011528.1_1870190_1871027_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_001027045.1_ASM102704v1	NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	4	2140587-2140676	4	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP011528.1_2135458_2135689_-,NA|364aa|up_0|NZ_CP011528.1_2139478_2140570_+,NA|35aa|down_0|NZ_CP011528.1_2141011_2141116_-,NA|53aa|down_2|NZ_CP011528.1_2141795_2141954_+	NA|237aa|up_9|NZ_CP011528.1_2131070_2131781_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP011528.1_2131901_2132345_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP011528.1_2132544_2132958_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP011528.1_2133414_2134788_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP011528.1_2135458_2135689_-	NA	NA|313aa|up_4|NZ_CP011528.1_2135719_2136658_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP011528.1_2137093_2137759_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP011528.1_2137910_2138231_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP011528.1_2138232_2139213_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP011528.1_2139478_2140570_+	NA	NA|35aa|down_0|NZ_CP011528.1_2141011_2141116_-	NA	NA|57aa|down_1|NZ_CP011528.1_2141632_2141803_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_CP011528.1_2141795_2141954_+	NA	NA|286aa|down_3|NZ_CP011528.1_2142611_2143469_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP011528.1_2143536_2144319_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP011528.1_2144550_2146356_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP011528.1_2147036_2148575_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP011528.1_2148609_2150742_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP011528.1_2150753_2151188_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP011528.1_2151187_2152294_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001027045.1_ASM102704v1	NZ_CP011528	Staphylococcus aureus strain RKI4 chromosome, complete genome	5	2152917-2153002	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_9|NZ_CP011528.1_2141011_2141116_-,NA|53aa|up_7|NZ_CP011528.1_2141795_2141954_+,NA	NA|35aa|up_9|NZ_CP011528.1_2141011_2141116_-	NA	NA|57aa|up_8|NZ_CP011528.1_2141632_2141803_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NZ_CP011528.1_2141795_2141954_+	NA	NA|286aa|up_6|NZ_CP011528.1_2142611_2143469_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP011528.1_2143536_2144319_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP011528.1_2144550_2146356_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP011528.1_2147036_2148575_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP011528.1_2148609_2150742_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP011528.1_2150753_2151188_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP011528.1_2151187_2152294_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP011528.1_2160385_2161741_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP011528.1_2161767_2162700_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP011528.1_2162701_2163511_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP011528.1_2163699_2164608_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP011528.1_2170895_2171960_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP011528.1_2172107_2173550_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP011528.1_2173872_2174346_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP011528.1_2174444_2175788_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP011528.1_2175966_2176650_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP011528.1_2176668_2177856_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
