assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001042615.1_ASM104261v1	NZ_AP012327	Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439	1	276934-277058	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL	Orphan	TGTCCGTTTCTGCAGAATCGGAC	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL	NA,NA|130aa|down_4|NZ_AP012327.1_279600_279990_+	NA|288aa|up_9|NZ_AP012327.1_265172_266036_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|394aa|up_8|NZ_AP012327.1_266032_267214_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|367aa|up_7|NZ_AP012327.1_267344_268445_+	pfam02517, Abi, CAAX protease self-immunity	NA|262aa|up_6|NZ_AP012327.1_268540_269326_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|409aa|up_5|NZ_AP012327.1_269551_270778_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|402aa|up_4|NZ_AP012327.1_270777_271983_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|225aa|up_3|NZ_AP012327.1_272151_272826_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|397aa|up_2|NZ_AP012327.1_272987_274178_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|322aa|up_1|NZ_AP012327.1_274459_275425_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|443aa|up_0|NZ_AP012327.1_275567_276896_-	pfam02447, GntP_permease, GntP family permease	NA|184aa|down_0|NZ_AP012327.1_277082_277634_-	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|245aa|down_1|NZ_AP012327.1_277910_278645_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|63aa|down_2|NZ_AP012327.1_278839_279028_-	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily	NA|108aa|down_3|NZ_AP012327.1_279287_279611_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|130aa|down_4|NZ_AP012327.1_279600_279990_+	NA	NA|163aa|down_5|NZ_AP012327.1_280147_280636_+	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|419aa|down_6|NZ_AP012327.1_280810_282067_-	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily	NA|65aa|down_7|NZ_AP012327.1_282483_282678_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|913aa|down_8|NZ_AP012327.1_283045_285784_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|201aa|down_9|NZ_AP012327.1_285846_286449_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]
GCF_001042615.1_ASM104261v1	NZ_AP012327	Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439	2	360478-360781	1	CRT	no		DEDDh,cas3,csa3,WYL	Orphan	GTCGTTCCGATCGTGACGANCG	22	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,csa3,WYL	NA|700aa|up_9|NZ_AP012327.1_336942_339042_+,NA|225aa|up_1|NZ_AP012327.1_356942_357617_+,NA	NA|700aa|up_9|NZ_AP012327.1_336942_339042_+	NA	NA|304aa|up_8|NZ_AP012327.1_339104_340016_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|194aa|up_7|NZ_AP012327.1_340040_340622_-	pfam02632, BioY, BioY family	NA|632aa|up_6|NZ_AP012327.1_340863_342759_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|561aa|up_5|NZ_AP012327.1_342758_344441_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|3110aa|up_4|NZ_AP012327.1_344538_353868_+	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|173aa|up_3|NZ_AP012327.1_354095_354614_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|606aa|up_2|NZ_AP012327.1_354811_356629_+	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|225aa|up_1|NZ_AP012327.1_356942_357617_+	NA	NA|90aa|up_0|NZ_AP012327.1_357749_358019_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|187aa|down_0|NZ_AP012327.1_361090_361651_+	pfam04011, LemA, LemA family	NA|738aa|down_1|NZ_AP012327.1_361762_363976_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|469aa|down_2|NZ_AP012327.1_364074_365481_+	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|288aa|down_3|NZ_AP012327.1_365574_366438_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|513aa|down_4|NZ_AP012327.1_366600_368139_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|339aa|down_5|NZ_AP012327.1_368222_369239_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|276aa|down_6|NZ_AP012327.1_369326_370154_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|230aa|down_7|NZ_AP012327.1_370196_370886_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|493aa|down_8|NZ_AP012327.1_371034_372513_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|447aa|down_9|NZ_AP012327.1_372505_373846_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)
GCF_001042615.1_ASM104261v1	NZ_AP012327	Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439	3	2098427-2098569	1	PILER-CR	no		DEDDh,cas3,csa3,WYL	Orphan	GCCTCCCACAGTCCAAATTCCTCCACCCACTGGAGGA	37	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL	NA|53aa|up_8|NZ_AP012327.1_2089537_2089696_+,NA|98aa|up_4|NZ_AP012327.1_2092880_2093174_-,NA|134aa|up_3|NZ_AP012327.1_2093410_2093812_-,NA|51aa|down_2|NZ_AP012327.1_2107304_2107457_+,NA|56aa|down_5|NZ_AP012327.1_2111133_2111301_-	NA|105aa|up_9|NZ_AP012327.1_2088302_2088617_-	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|53aa|up_8|NZ_AP012327.1_2089537_2089696_+	NA	NA|306aa|up_7|NZ_AP012327.1_2089815_2090733_-	pfam16280, DUF4928, Domain of unknown function (DUF4928)	NA|393aa|up_6|NZ_AP012327.1_2090745_2091924_-	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	NA|254aa|up_5|NZ_AP012327.1_2092021_2092783_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|98aa|up_4|NZ_AP012327.1_2092880_2093174_-	NA	NA|134aa|up_3|NZ_AP012327.1_2093410_2093812_-	NA	NA|227aa|up_2|NZ_AP012327.1_2093824_2094505_-	pfam13481, AAA_25, AAA domain	NA|359aa|up_1|NZ_AP012327.1_2094590_2095667_-	cd01029, TOPRIM_primases, TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs	NA|65aa|up_0|NZ_AP012327.1_2095669_2095864_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|252aa|down_0|NZ_AP012327.1_2104762_2105518_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|457aa|down_1|NZ_AP012327.1_2105663_2107034_-	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|51aa|down_2|NZ_AP012327.1_2107304_2107457_+	NA	NA|422aa|down_3|NZ_AP012327.1_2107440_2108706_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|607aa|down_4|NZ_AP012327.1_2108931_2110752_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|56aa|down_5|NZ_AP012327.1_2111133_2111301_-	NA	NA|472aa|down_6|NZ_AP012327.1_2112191_2113607_+	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|292aa|down_7|NZ_AP012327.1_2114013_2114889_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|312aa|down_8|NZ_AP012327.1_2114927_2115863_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|431aa|down_9|NZ_AP012327.1_2115877_2117170_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
GCF_001042615.1_ASM104261v1	NZ_AP012327	Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439	4	2118657-2118815	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL	Orphan	TATTTAGCGCTCTCGACGGGCGCAAGCACAGCCTTGAAAAGGACTGCTTGC	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL	NA|51aa|up_8|NZ_AP012327.1_2107304_2107457_+,NA|56aa|up_5|NZ_AP012327.1_2111133_2111301_-,NA	NA|457aa|up_9|NZ_AP012327.1_2105663_2107034_-	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|51aa|up_8|NZ_AP012327.1_2107304_2107457_+	NA	NA|422aa|up_7|NZ_AP012327.1_2107440_2108706_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|607aa|up_6|NZ_AP012327.1_2108931_2110752_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|56aa|up_5|NZ_AP012327.1_2111133_2111301_-	NA	NA|472aa|up_4|NZ_AP012327.1_2112191_2113607_+	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|292aa|up_3|NZ_AP012327.1_2114013_2114889_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|312aa|up_2|NZ_AP012327.1_2114927_2115863_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|431aa|up_1|NZ_AP012327.1_2115877_2117170_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|401aa|up_0|NZ_AP012327.1_2117377_2118580_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|150aa|down_0|NZ_AP012327.1_2121205_2121655_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|691aa|down_1|NZ_AP012327.1_2121762_2123835_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|245aa|down_2|NZ_AP012327.1_2124371_2125106_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|194aa|down_3|NZ_AP012327.1_2125338_2125920_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|41aa|down_4|NZ_AP012327.1_2126162_2126285_+	pfam13333, rve_2, Integrase core domain	NA|292aa|down_5|NZ_AP012327.1_2126474_2127350_+	PRK06148, PRK06148, hypothetical protein; Provisional	NA|999aa|down_6|NZ_AP012327.1_2134297_2137294_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|418aa|down_7|NZ_AP012327.1_2137636_2138890_-	cd01844, SGNH_hydrolase_like_6, SGNH_hydrolase subfamily	NA|270aa|down_8|NZ_AP012327.1_2138911_2139721_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|406aa|down_9|NZ_AP012327.1_2139717_2140935_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily
GCF_001042615.1_ASM104261v1	NZ_AP012327	Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 strain JCM 15439	5	2257698-2257880	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL	Orphan	ATTCCTCCAGTCAGTGGAGAAAT	23	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,csa3,WYL	NA,NA|209aa|down_7|NZ_AP012327.1_2268775_2269402_+,NA|85aa|down_8|NZ_AP012327.1_2269469_2269724_+	NA|377aa|up_9|NZ_AP012327.1_2242191_2243322_-	pfam11175, DUF2961, Protein of unknown function (DUF2961)	NA|293aa|up_8|NZ_AP012327.1_2243390_2244269_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_7|NZ_AP012327.1_2244337_2245276_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|436aa|up_6|NZ_AP012327.1_2245441_2246749_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|341aa|up_5|NZ_AP012327.1_2246997_2248020_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|749aa|up_4|NZ_AP012327.1_2248732_2250979_-	pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2	NA|438aa|up_3|NZ_AP012327.1_2251233_2252547_+	cd06543, GH18_PF-ChiA-like, PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain	NA|819aa|up_2|NZ_AP012327.1_2252655_2255112_+	pfam00563, EAL, EAL domain	NA|339aa|up_1|NZ_AP012327.1_2255244_2256261_+	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|425aa|up_0|NZ_AP012327.1_2256340_2257615_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_0|NZ_AP012327.1_2257968_2258781_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|671aa|down_1|NZ_AP012327.1_2258849_2260862_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|314aa|down_2|NZ_AP012327.1_2260940_2261882_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|375aa|down_3|NZ_AP012327.1_2262363_2263488_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|235aa|down_4|NZ_AP012327.1_2263501_2264206_-	cd19358, TenA_E_Spr0628-like, TenA_E proteins similar to Streptococcus pneumoniae Spr0628 and Saccharomyces cerevisiae S288C PET18	NA|702aa|down_5|NZ_AP012327.1_2264378_2266484_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|621aa|down_6|NZ_AP012327.1_2266697_2268560_-	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	NA|209aa|down_7|NZ_AP012327.1_2268775_2269402_+	NA	NA|85aa|down_8|NZ_AP012327.1_2269469_2269724_+	NA	NA|328aa|down_9|NZ_AP012327.1_2269841_2270825_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]
