assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001042655.1_ASM104265v1	NZ_AP012332	Gardnerella vaginalis ATCC 14018 = JCM 11026	1	177388-177464	1	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	Orphan	TTTGTTAGATTTGTCTCGCTCGTGA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	NA,NA	NA|69aa|up_9|NZ_AP012332.1_165728_165935_+	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|274aa|up_8|NZ_AP012332.1_166003_166825_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|243aa|up_7|NZ_AP012332.1_166867_167596_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|634aa|up_6|NZ_AP012332.1_167795_169697_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|257aa|up_5|NZ_AP012332.1_169696_170467_+	PRK14157, PRK14157, heat shock protein GrpE; Provisional	NA|351aa|up_4|NZ_AP012332.1_170676_171729_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|205aa|up_3|NZ_AP012332.1_171769_172384_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|238aa|up_2|NZ_AP012332.1_172513_173227_+	cd07505, HAD_BPGM-like, beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|784aa|up_1|NZ_AP012332.1_173588_175940_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|381aa|up_0|NZ_AP012332.1_176074_177217_+	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type	NA|374aa|down_0|NZ_AP012332.1_177997_179119_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|953aa|down_1|NZ_AP012332.1_179289_182148_+	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|234aa|down_2|NZ_AP012332.1_182169_182871_+	PRK00698, tmk, thymidylate kinase; Validated	NA|396aa|down_3|NZ_AP012332.1_182897_184085_+	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|184aa|down_4|NZ_AP012332.1_184420_184972_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|536aa|down_5|NZ_AP012332.1_185180_186788_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|506aa|down_6|NZ_AP012332.1_187000_188518_+	COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]	NA|977aa|down_7|NZ_AP012332.1_189013_191944_+	pfam17210, SdrD_B, SdrD B-like domain	NA|282aa|down_8|NZ_AP012332.1_192615_193461_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|298aa|down_9|NZ_AP012332.1_193616_194510_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase
GCF_001042655.1_ASM104265v1	NZ_AP012332	Gardnerella vaginalis ATCC 14018 = JCM 11026	2	279088-279225	1	PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	Orphan	CCTCGTCAGGGCGGCGGTAATGGC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	NA|318aa|up_1|NZ_AP012332.1_275864_276818_-,NA|159aa|down_4|NZ_AP012332.1_286663_287140_+	NA|227aa|up_9|NZ_AP012332.1_265422_266103_+	PRK10847, PRK10847, DedA family protein	NA|90aa|up_8|NZ_AP012332.1_266248_266518_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|915aa|up_7|NZ_AP012332.1_266952_269697_+	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|286aa|up_6|NZ_AP012332.1_269823_270681_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|322aa|up_5|NZ_AP012332.1_270735_271701_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|224aa|up_4|NZ_AP012332.1_271732_272404_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|464aa|up_3|NZ_AP012332.1_272513_273905_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|445aa|up_2|NZ_AP012332.1_274083_275418_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|318aa|up_1|NZ_AP012332.1_275864_276818_-	NA	NA|350aa|up_0|NZ_AP012332.1_277039_278089_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|194aa|down_0|NZ_AP012332.1_281279_281861_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|401aa|down_1|NZ_AP012332.1_281897_283100_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|446aa|down_2|NZ_AP012332.1_283189_284527_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|355aa|down_3|NZ_AP012332.1_284835_285900_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|159aa|down_4|NZ_AP012332.1_286663_287140_+	NA	NA|234aa|down_5|NZ_AP012332.1_287148_287850_+	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases	NA|394aa|down_6|NZ_AP012332.1_288133_289315_+	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|321aa|down_7|NZ_AP012332.1_289421_290384_+	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC	NA|336aa|down_8|NZ_AP012332.1_290380_291388_+	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA	NA|260aa|down_9|NZ_AP012332.1_291417_292197_+	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional
GCF_001042655.1_ASM104265v1	NZ_AP012332	Gardnerella vaginalis ATCC 14018 = JCM 11026	3	697301-699158	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	Type I-E	GTATTTCCCGCATACGCGGGGGTGATCC,GTATTTCCCGCATACGCGGGGGTGATCC,GTATTTCCCGCATACGCGGGGGTGATCC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	30,30,21	30	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	NA|99aa|up_8|NZ_AP012332.1_686078_686375_+,NA|110aa|down_0|NZ_AP012332.1_699312_699642_-,NA|54aa|down_1|NZ_AP012332.1_699652_699814_-,NA|105aa|down_2|NZ_AP012332.1_699940_700255_-	NA|727aa|up_9|NZ_AP012332.1_682217_684398_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|99aa|up_8|NZ_AP012332.1_686078_686375_+	NA	cas3|952aa|up_7|NZ_AP012332.1_687230_690086_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|557aa|up_6|NZ_AP012332.1_690072_691743_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|205aa|up_5|NZ_AP012332.1_691765_692380_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|363aa|up_4|NZ_AP012332.1_692474_693563_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|292aa|up_3|NZ_AP012332.1_693621_694497_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NZ_AP012332.1_694497_695145_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|314aa|up_1|NZ_AP012332.1_695170_696112_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|360aa|up_0|NZ_AP012332.1_696113_697193_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|110aa|down_0|NZ_AP012332.1_699312_699642_-	NA	NA|54aa|down_1|NZ_AP012332.1_699652_699814_-	NA	NA|105aa|down_2|NZ_AP012332.1_699940_700255_-	NA	NA|311aa|down_3|NZ_AP012332.1_701029_701962_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|229aa|down_4|NZ_AP012332.1_702061_702748_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|348aa|down_5|NZ_AP012332.1_702762_703806_-	cd01171, YXKO-related, B	NA|395aa|down_6|NZ_AP012332.1_704147_705332_+	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|271aa|down_7|NZ_AP012332.1_705426_706239_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|315aa|down_8|NZ_AP012332.1_706228_707173_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|300aa|down_9|NZ_AP012332.1_707175_708075_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
GCF_001042655.1_ASM104265v1	NZ_AP012332	Gardnerella vaginalis ATCC 14018 = JCM 11026	4	985079-985156	3	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	Orphan	TTGAGCTACAAAACCCGTCAATCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	NA|182aa|up_4|NZ_AP012332.1_980238_980784_-,NA	NA|1042aa|up_9|NZ_AP012332.1_970285_973411_-	cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|417aa|up_8|NZ_AP012332.1_973837_975088_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|701aa|up_7|NZ_AP012332.1_975266_977369_-	PRK05667, dnaG, DNA primase; Validated	NA|428aa|up_6|NZ_AP012332.1_977428_978712_-	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|452aa|up_5|NZ_AP012332.1_978756_980112_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|182aa|up_4|NZ_AP012332.1_980238_980784_-	NA	NA|167aa|up_3|NZ_AP012332.1_980844_981345_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|558aa|up_2|NZ_AP012332.1_981527_983201_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|282aa|up_1|NZ_AP012332.1_983190_984036_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|323aa|up_0|NZ_AP012332.1_984044_985013_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|561aa|down_0|NZ_AP012332.1_985220_986903_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|312aa|down_1|NZ_AP012332.1_987321_988257_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|198aa|down_2|NZ_AP012332.1_988272_988866_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|588aa|down_3|NZ_AP012332.1_988960_990724_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|257aa|down_4|NZ_AP012332.1_991176_991947_+	PRK13318, PRK13318, type III pantothenate kinase	NA|497aa|down_5|NZ_AP012332.1_991986_993477_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|636aa|down_6|NZ_AP012332.1_993488_995396_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|251aa|down_7|NZ_AP012332.1_995504_996257_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|down_8|NZ_AP012332.1_996392_997385_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|309aa|down_9|NZ_AP012332.1_997545_998472_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold
GCF_001042655.1_ASM104265v1	NZ_AP012332	Gardnerella vaginalis ATCC 14018 = JCM 11026	5	1331196-1331302	4	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	Orphan	TAAAGTCCAGTGGACTTTATGTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL,PD-DExK	NA|254aa|up_4|NZ_AP012332.1_1316710_1317472_-,NA|239aa|down_2|NZ_AP012332.1_1339402_1340119_-	NA|1494aa|up_9|NZ_AP012332.1_1294802_1299284_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|1116aa|up_8|NZ_AP012332.1_1300020_1303368_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|224aa|up_7|NZ_AP012332.1_1306451_1307123_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|1391aa|up_6|NZ_AP012332.1_1307210_1311383_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|1639aa|up_5|NZ_AP012332.1_1311375_1316292_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|254aa|up_4|NZ_AP012332.1_1316710_1317472_-	NA	NA|2677aa|up_3|NZ_AP012332.1_1317584_1325615_-	TIGR04264, hypothetical_protein_SAO11_2114, hyperosmolarity resistance protein Ebh, N-terminal domain	NA|383aa|up_2|NZ_AP012332.1_1325759_1326908_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|619aa|up_1|NZ_AP012332.1_1327113_1328970_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|482aa|up_0|NZ_AP012332.1_1329571_1331017_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|1340aa|down_0|NZ_AP012332.1_1331529_1335549_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1189aa|down_1|NZ_AP012332.1_1335636_1339203_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|239aa|down_2|NZ_AP012332.1_1339402_1340119_-	NA	NA|228aa|down_3|NZ_AP012332.1_1340173_1340857_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|316aa|down_4|NZ_AP012332.1_1340868_1341816_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|246aa|down_5|NZ_AP012332.1_1342277_1343015_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|867aa|down_6|NZ_AP012332.1_1342998_1345599_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|228aa|down_7|NZ_AP012332.1_1345852_1346536_-	PRK00015, rnhB, ribonuclease HII; Validated	NA|285aa|down_8|NZ_AP012332.1_1346575_1347430_-	TIGR02227, Inactive_signal_peptidase_IA	NA|123aa|down_9|NZ_AP012332.1_1347467_1347836_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional
