assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	1	632515-632652	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	632533-632550|632533-632550|632617-632634	NZ_CP008744.1_22464-22481|NZ_CP008744.1_1410680-1410697|NZ_CP008744.1_974045-974062	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP008744.1_623268_623430_-,NA|478aa|up_0|NZ_CP008744.1_629530_630964_-,NA|450aa|down_2|NZ_CP008744.1_634287_635637_-,NA|93aa|down_5|NZ_CP008744.1_637167_637446_-	NA|325aa|up_9|NZ_CP008744.1_621038_622013_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP008744.1_622054_623272_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP008744.1_623268_623430_-	NA	NA|106aa|up_6|NZ_CP008744.1_623476_623794_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|579aa|up_5|NZ_CP008744.1_623940_625677_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP008744.1_625705_626713_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP008744.1_626794_627673_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP008744.1_627689_628484_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP008744.1_628480_629521_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP008744.1_629530_630964_-	NA	NA|211aa|down_0|NZ_CP008744.1_632975_633608_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP008744.1_633604_634267_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP008744.1_634287_635637_-	NA	NA|381aa|down_3|NZ_CP008744.1_635648_636791_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP008744.1_636805_637108_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP008744.1_637167_637446_-	NA	NA|418aa|down_6|NZ_CP008744.1_637442_638696_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP008744.1_638815_639202_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP008744.1_639264_640149_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP008744.1_640244_641147_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	2	693251-693327	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP008744.1_679144_679552_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP008744.1_679611_680298_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP008744.1_680451_683085_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP008744.1_683107_685495_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP008744.1_685632_686355_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP008744.1_686351_687149_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP008744.1_687150_688038_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP008744.1_688043_689258_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP008744.1_689254_690286_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP008744.1_690282_691728_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP008744.1_694462_696013_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP008744.1_696064_696457_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP008744.1_696453_696711_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP008744.1_696893_698129_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP008744.1_698379_698793_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP008744.1_698789_699026_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP008744.1_699129_699636_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP008744.1_699749_700220_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP008744.1_700263_701025_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP008744.1_701081_701393_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	3	927387-928298	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280|928254-928280	NZ_CP008744.1_835313-835339|NZ_CP008744.1_331978-331952|NZ_CP008744.1_334992-334966|NZ_CP008744.1_337938-337912|NZ_CP008744.1_841564-841590|NZ_CP008744.1_842843-842869|NZ_CP008744.1_927120-927146|NZ_CP008744.1_2383833-2383807|NZ_CP008744.1_333214-333188|NZ_CP008744.1_335943-335917|NZ_CP008744.1_336282-336256|NZ_CP008744.1_339057-339031|NZ_CP008744.1_676351-676325|NZ_CP008744.1_838685-838711|NZ_CP008744.1_839783-839809|NZ_CP008744.1_927021-927047|NZ_CP008744.1_1215520-1215546|NZ_CP008744.1_1652685-1652659|NZ_CP008744.1_1841893-1841867|NZ_CP008744.1_2043374-2043348|NZ_CP008744.1_3811693-3811719|NZ_CP008744.1_3941981-3942007|NZ_CP008744.1_3942137-3942163	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP008744.1_932416_932968_-,NA|81aa|down_8|NZ_CP008744.1_938443_938686_+	NA|685aa|up_9|NZ_CP008744.1_915022_917077_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP008744.1_917242_918412_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP008744.1_918499_919516_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP008744.1_919677_920319_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP008744.1_920399_921455_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP008744.1_921506_921899_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP008744.1_921956_922379_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP008744.1_922340_922631_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP008744.1_922735_923641_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP008744.1_923659_924475_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP008744.1_928675_931324_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP008744.1_931791_932436_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP008744.1_932416_932968_-	NA	NA|241aa|down_3|NZ_CP008744.1_933048_933771_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP008744.1_933841_934870_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_5|NZ_CP008744.1_935558_936341_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP008744.1_936427_937240_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP008744.1_937307_938168_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP008744.1_938443_938686_+	NA	NA|431aa|down_9|NZ_CP008744.1_938962_940255_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	4	929235-929364	1	PILER-CR	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CCGCCGGCTCCGCCGGTGGCGCCGC	25	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP008744.1_932416_932968_-,NA|81aa|down_7|NZ_CP008744.1_938443_938686_+	NA|390aa|up_9|NZ_CP008744.1_917242_918412_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NZ_CP008744.1_918499_919516_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NZ_CP008744.1_919677_920319_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NZ_CP008744.1_920399_921455_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NZ_CP008744.1_921506_921899_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NZ_CP008744.1_921956_922379_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_3|NZ_CP008744.1_922340_922631_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_2|NZ_CP008744.1_922735_923641_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP008744.1_923659_924475_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|911aa|up_0|NZ_CP008744.1_925716_928449_+	pfam00934, PE, PE family	NA|215aa|down_0|NZ_CP008744.1_931791_932436_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP008744.1_932416_932968_-	NA	NA|241aa|down_2|NZ_CP008744.1_933048_933771_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP008744.1_933841_934870_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_4|NZ_CP008744.1_935558_936341_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP008744.1_936427_937240_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP008744.1_937307_938168_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP008744.1_938443_938686_+	NA	NA|431aa|down_8|NZ_CP008744.1_938962_940255_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP008744.1_940238_941243_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	5	1213595-1214451	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	83	1213978-1213999|1213978-1213999|1214023-1214038|1214161-1214182|1214161-1214182|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296|1214278-1214296	NZ_CP008744.1_2904482-2904461|NZ_CP008744.1_2904548-2904527|NZ_CP008744.1_2070564-2070549|NZ_CP008744.1_839147-839168|NZ_CP008744.1_1219415-1219436|NZ_CP008744.1_335379-335361|NZ_CP008744.1_676015-675997|NZ_CP008744.1_841396-841414|NZ_CP008744.1_1219388-1219406|NZ_CP008744.1_1219460-1219478|NZ_CP008744.1_1627406-1627388|NZ_CP008744.1_1630232-1630214|NZ_CP008744.1_1633090-1633072|NZ_CP008744.1_1633852-1633834|NZ_CP008744.1_1973201-1973183|NZ_CP008744.1_2043548-2043530|NZ_CP008744.1_2044094-2044076|NZ_CP008744.1_2746047-2746029|NZ_CP008744.1_2749567-2749549|NZ_CP008744.1_3934110-3934128|NZ_CP008744.1_150232-150250|NZ_CP008744.1_332143-332125|NZ_CP008744.1_333370-333352|NZ_CP008744.1_336486-336468|NZ_CP008744.1_336939-336921|NZ_CP008744.1_336990-336972|NZ_CP008744.1_336999-336981|NZ_CP008744.1_339270-339252|NZ_CP008744.1_339390-339372|NZ_CP008744.1_339657-339639|NZ_CP008744.1_339686-339704|NZ_CP008744.1_339780-339762|NZ_CP008744.1_364357-364339|NZ_CP008744.1_444571-444553|NZ_CP008744.1_547915-547897|NZ_CP008744.1_625215-625233|NZ_CP008744.1_625437-625455|NZ_CP008744.1_675181-675163|NZ_CP008744.1_842345-842363|NZ_CP008744.1_1091803-1091821|NZ_CP008744.1_1092451-1092469|NZ_CP008744.1_1096521-1096503|NZ_CP008744.1_1214650-1214668|NZ_CP008744.1_1215157-1215175|NZ_CP008744.1_1215409-1215427|NZ_CP008744.1_1215427-1215445|NZ_CP008744.1_1219808-1219826|NZ_CP008744.1_1487635-1487617|NZ_CP008744.1_1615368-1615350|NZ_CP008744.1_1615821-1615803|NZ_CP008744.1_1632955-1632937|NZ_CP008744.1_1632964-1632946|NZ_CP008744.1_1633177-1633159|NZ_CP008744.1_1633228-1633210|NZ_CP008744.1_1841470-1841452|NZ_CP008744.1_1841998-1841980|NZ_CP008744.1_1972474-1972456|NZ_CP008744.1_1983436-1983454|NZ_CP008744.1_2070762-2070744|NZ_CP008744.1_2267306-2267288|NZ_CP008744.1_2318553-2318535|NZ_CP008744.1_2379763-2379781|NZ_CP008744.1_2383746-2383728|NZ_CP008744.1_2526429-2526411|NZ_CP008744.1_2638705-2638723|NZ_CP008744.1_2739363-2739345|NZ_CP008744.1_2739945-2739927|NZ_CP008744.1_2987759-2987777|NZ_CP008744.1_2987858-2987876|NZ_CP008744.1_3637223-3637241|NZ_CP008744.1_3715794-3715812|NZ_CP008744.1_3746944-3746926|NZ_CP008744.1_3747568-3747550|NZ_CP008744.1_3747811-3747793|NZ_CP008744.1_3747943-3747925|NZ_CP008744.1_3749848-3749830|NZ_CP008744.1_3810274-3810292|NZ_CP008744.1_3810457-3810475|NZ_CP008744.1_3931543-3931561|NZ_CP008744.1_3933282-3933300|NZ_CP008744.1_3933936-3933954|NZ_CP008744.1_3942359-3942377|NZ_CP008744.1_4032185-4032167	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP008744.1_1209027_1209294_+,NA|61aa|down_3|NZ_CP008744.1_1216995_1217178_+	NA|465aa|up_9|NZ_CP008744.1_1203361_1204756_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP008744.1_1204957_1205680_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP008744.1_1205711_1206878_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP008744.1_1206948_1207443_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP008744.1_1207628_1208063_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP008744.1_1208164_1209031_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP008744.1_1209027_1209294_+	NA	NA|674aa|up_2|NZ_CP008744.1_1209280_1211302_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP008744.1_1211400_1212129_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP008744.1_1212239_1213028_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP008744.1_1215810_1216131_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP008744.1_1216283_1216718_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP008744.1_1216819_1216984_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP008744.1_1216995_1217178_+	NA	NA|152aa|down_4|NZ_CP008744.1_1217369_1217825_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|851aa|down_5|NZ_CP008744.1_1218239_1220792_+	pfam00934, PE, PE family	NA|313aa|down_6|NZ_CP008744.1_1221009_1221948_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NZ_CP008744.1_1222335_1223616_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NZ_CP008744.1_1223720_1224548_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NZ_CP008744.1_1224758_1226060_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	6	2070234-2070488	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2070315-2070332|2070315-2070332|2070405-2070422	NZ_CP008744.1_402337-402320|NZ_CP008744.1_608586-608569|NZ_CP008744.1_3384007-3383990	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP008744.1_2069593_2069857_-,NA	NA|165aa|up_9|NZ_CP008744.1_2055943_2056438_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP008744.1_2056785_2057463_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP008744.1_2057821_2060647_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP008744.1_2060873_2061734_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP008744.1_2061774_2062641_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP008744.1_2062645_2064532_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP008744.1_2064547_2066581_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP008744.1_2066700_2068926_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP008744.1_2069201_2069597_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP008744.1_2069593_2069857_-	NA	NA|350aa|down_0|NZ_CP008744.1_2071624_2072674_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP008744.1_2072673_2074041_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP008744.1_2074214_2075651_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NZ_CP008744.1_2077166_2078117_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NZ_CP008744.1_2078131_2078548_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NZ_CP008744.1_2078825_2079248_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NZ_CP008744.1_2079296_2079599_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NZ_CP008744.1_2079595_2079910_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NZ_CP008744.1_2079909_2081643_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NZ_CP008744.1_2081642_2082278_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	7	2151118-2151243	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP008744.1_2134444_2134915_-,NA|136aa|up_1|NZ_CP008744.1_2141940_2142348_-,NA|127aa|down_5|NZ_CP008744.1_2158852_2159233_-	NA|157aa|up_9|NZ_CP008744.1_2134444_2134915_-	NA	NA|216aa|up_8|NZ_CP008744.1_2135254_2135902_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP008744.1_2135908_2138131_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP008744.1_2138168_2138612_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP008744.1_2138725_2139319_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP008744.1_2139401_2140007_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP008744.1_2140106_2141111_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP008744.1_2141210_2141963_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP008744.1_2141940_2142348_-	NA	NA|767aa|up_0|NZ_CP008744.1_2142482_2144783_+	PLN02892, PLN02892, isocitrate lyase	NA|155aa|down_0|NZ_CP008744.1_2153363_2153828_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP008744.1_2153925_2154789_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP008744.1_2154826_2156098_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP008744.1_2156369_2157485_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP008744.1_2157475_2158816_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP008744.1_2158852_2159233_-	NA	NA|621aa|down_6|NZ_CP008744.1_2159389_2161252_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP008744.1_2161259_2161739_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP008744.1_2161975_2162749_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP008744.1_2162752_2163520_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	8	3052114-3053472	4,4,2	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,TTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,35	2	2	3052964-3052998|3052971-3053006	NZ_CP008744.1_3053473-3053507|NZ_CP008744.1_3053473-3053508	II-B,III-A:II-B,III-A:II-B,III-A	18,18,18	18	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP008744.1_3045393_3045648_-,NA|135aa|up_7|NZ_CP008744.1_3045795_3046200_+,NA|64aa|up_6|NZ_CP008744.1_3046196_3046388_+,NA|86aa|up_4|NZ_CP008744.1_3047974_3048232_+,NA|104aa|up_3|NZ_CP008744.1_3048336_3048648_+,NA|203aa|up_2|NZ_CP008744.1_3049067_3049676_+,NA	NA|92aa|up_9|NZ_CP008744.1_3044942_3045218_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP008744.1_3045393_3045648_-	NA	NA|135aa|up_7|NZ_CP008744.1_3045795_3046200_+	NA	NA|64aa|up_6|NZ_CP008744.1_3046196_3046388_+	NA	NA|385aa|up_5|NZ_CP008744.1_3046586_3047741_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP008744.1_3047974_3048232_+	NA	NA|104aa|up_3|NZ_CP008744.1_3048336_3048648_+	NA	NA|203aa|up_2|NZ_CP008744.1_3049067_3049676_+	NA	NA|470aa|up_1|NZ_CP008744.1_3049746_3051156_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP008744.1_3051152_3051965_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP008744.1_3053569_3054831_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP008744.1_3057084_3057426_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP008744.1_3057426_3058443_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_3|NZ_CP008744.1_3059699_3060827_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP008744.1_3060823_3061732_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP008744.1_3061712_3062423_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP008744.1_3062432_3062807_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP008744.1_3062803_3065242_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP008744.1_3065238_3065961_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP008744.1_3066360_3066906_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	9	3054866-3057036	5,5,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	29,29,28	29	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP008744.1_3045393_3045648_-,NA|135aa|up_8|NZ_CP008744.1_3045795_3046200_+,NA|64aa|up_7|NZ_CP008744.1_3046196_3046388_+,NA|86aa|up_5|NZ_CP008744.1_3047974_3048232_+,NA|104aa|up_4|NZ_CP008744.1_3048336_3048648_+,NA|203aa|up_3|NZ_CP008744.1_3049067_3049676_+,NA	NA|85aa|up_9|NZ_CP008744.1_3045393_3045648_-	NA	NA|135aa|up_8|NZ_CP008744.1_3045795_3046200_+	NA	NA|64aa|up_7|NZ_CP008744.1_3046196_3046388_+	NA	NA|385aa|up_6|NZ_CP008744.1_3046586_3047741_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP008744.1_3047974_3048232_+	NA	NA|104aa|up_4|NZ_CP008744.1_3048336_3048648_+	NA	NA|203aa|up_3|NZ_CP008744.1_3049067_3049676_+	NA	NA|470aa|up_2|NZ_CP008744.1_3049746_3051156_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP008744.1_3051152_3051965_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP008744.1_3053569_3054831_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP008744.1_3057084_3057426_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP008744.1_3057426_3058443_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NZ_CP008744.1_3059699_3060827_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NZ_CP008744.1_3060823_3061732_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP008744.1_3061712_3062423_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP008744.1_3062432_3062807_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP008744.1_3062803_3065242_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_7|NZ_CP008744.1_3065238_3065961_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP008744.1_3066360_3066906_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP008744.1_3067177_3068062_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	10	4088691-4089017	6	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	1	40	4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737|4088716-4088737	NZ_CP008744.1_970593-970572|NZ_CP008744.1_332142-332121|NZ_CP008744.1_339389-339368|NZ_CP008744.1_1841571-1841550|NZ_CP008744.1_2384204-2384183|NZ_CP008744.1_3746943-3746922|NZ_CP008744.1_3947873-3947894|NZ_CP008744.1_335192-335171|NZ_CP008744.1_335378-335357|NZ_CP008744.1_336485-336464|NZ_CP008744.1_336989-336968|NZ_CP008744.1_339083-339062|NZ_CP008744.1_673740-673719|NZ_CP008744.1_675180-675159|NZ_CP008744.1_841244-841265|NZ_CP008744.1_929173-929152|NZ_CP008744.1_970113-970092|NZ_CP008744.1_1091804-1091825|NZ_CP008744.1_1190764-1190743|NZ_CP008744.1_1193289-1193268|NZ_CP008744.1_1486983-1486962|NZ_CP008744.1_1487634-1487613|NZ_CP008744.1_1633851-1633830|NZ_CP008744.1_1972620-1972599|NZ_CP008744.1_1973851-1973830|NZ_CP008744.1_1984226-1984247|NZ_CP008744.1_2043901-2043880|NZ_CP008744.1_2748542-2748521|NZ_CP008744.1_3096190-3096211|NZ_CP008744.1_3749847-3749826|NZ_CP008744.1_3788373-3788394|NZ_CP008744.1_3935233-3935254|NZ_CP008744.1_3935557-3935578|NZ_CP008744.1_3936154-3936175|NZ_CP008744.1_3936778-3936799|NZ_CP008744.1_3937375-3937396|NZ_CP008744.1_3942426-3942447|NZ_CP008744.1_3944874-3944895|NZ_CP008744.1_4032085-4032064|NZ_CP008744.1_4032184-4032163	NA	5	5	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_8|NZ_CP008744.1_4075743_4075935_+,NA|193aa|up_4|NZ_CP008744.1_4082193_4082772_-,NA|100aa|down_1|NZ_CP008744.1_4089676_4089976_-,NA|257aa|down_8|NZ_CP008744.1_4095941_4096712_-	NA|65aa|up_9|NZ_CP008744.1_4075154_4075349_-	pfam18495, VbhA, Antitoxin VbhA	NA|64aa|up_8|NZ_CP008744.1_4075743_4075935_+	NA	NA|402aa|up_7|NZ_CP008744.1_4076099_4077305_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_6|NZ_CP008744.1_4077390_4079040_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_5|NZ_CP008744.1_4079036_4081841_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_4|NZ_CP008744.1_4082193_4082772_-	NA	NA|68aa|up_3|NZ_CP008744.1_4082911_4083115_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_2|NZ_CP008744.1_4083364_4085680_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_1|NZ_CP008744.1_4085816_4086101_+	pfam00934, PE, PE family	NA|346aa|up_0|NZ_CP008744.1_4086424_4087462_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|126aa|down_0|NZ_CP008744.1_4089336_4089714_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NZ_CP008744.1_4089676_4089976_-	NA	NA|69aa|down_2|NZ_CP008744.1_4089999_4090206_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NZ_CP008744.1_4090215_4090791_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NZ_CP008744.1_4090814_4091615_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NZ_CP008744.1_4091611_4092775_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NZ_CP008744.1_4092771_4093824_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NZ_CP008744.1_4094323_4095187_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NZ_CP008744.1_4095941_4096712_-	NA	NA|549aa|down_9|NZ_CP008744.1_4096708_4098355_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	11	4089094-4089172	7	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	0	0	NA	NA	NA	1	1	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_8|NZ_CP008744.1_4075743_4075935_+,NA|193aa|up_4|NZ_CP008744.1_4082193_4082772_-,NA|100aa|down_1|NZ_CP008744.1_4089676_4089976_-,NA|257aa|down_8|NZ_CP008744.1_4095941_4096712_-	NA|65aa|up_9|NZ_CP008744.1_4075154_4075349_-	pfam18495, VbhA, Antitoxin VbhA	NA|64aa|up_8|NZ_CP008744.1_4075743_4075935_+	NA	NA|402aa|up_7|NZ_CP008744.1_4076099_4077305_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_6|NZ_CP008744.1_4077390_4079040_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_5|NZ_CP008744.1_4079036_4081841_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_4|NZ_CP008744.1_4082193_4082772_-	NA	NA|68aa|up_3|NZ_CP008744.1_4082911_4083115_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_2|NZ_CP008744.1_4083364_4085680_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_1|NZ_CP008744.1_4085816_4086101_+	pfam00934, PE, PE family	NA|346aa|up_0|NZ_CP008744.1_4086424_4087462_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|126aa|down_0|NZ_CP008744.1_4089336_4089714_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NZ_CP008744.1_4089676_4089976_-	NA	NA|69aa|down_2|NZ_CP008744.1_4089999_4090206_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NZ_CP008744.1_4090215_4090791_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NZ_CP008744.1_4090814_4091615_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NZ_CP008744.1_4091611_4092775_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NZ_CP008744.1_4092771_4093824_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NZ_CP008744.1_4094323_4095187_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NZ_CP008744.1_4095941_4096712_-	NA	NA|549aa|down_9|NZ_CP008744.1_4096708_4098355_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_001043255.1_ASM104325v1	NZ_CP008744	Mycobacterium tuberculosis variant bovis BCG strain 3281 chromosome, complete genome	12	4105355-4105443	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP008744.1_4095941_4096712_-,NA|233aa|up_0|NZ_CP008744.1_4104459_4105158_-,NA|126aa|down_6|NZ_CP008744.1_4110678_4111056_+	NA|388aa|up_9|NZ_CP008744.1_4091611_4092775_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP008744.1_4092771_4093824_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP008744.1_4094323_4095187_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP008744.1_4095941_4096712_-	NA	NA|549aa|up_5|NZ_CP008744.1_4096708_4098355_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP008744.1_4098351_4099215_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP008744.1_4099207_4100134_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP008744.1_4100135_4101761_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP008744.1_4102468_4104424_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP008744.1_4104459_4105158_-	NA	NA|173aa|down_0|NZ_CP008744.1_4105503_4106022_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP008744.1_4106022_4107006_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP008744.1_4106998_4108192_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP008744.1_4108197_4109019_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP008744.1_4109150_4109834_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP008744.1_4109833_4110571_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP008744.1_4110678_4111056_+	NA	NA|225aa|down_7|NZ_CP008744.1_4111154_4111829_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP008744.1_4111934_4112729_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP008744.1_4112735_4113191_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
