The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	445058	496354	4758451	terminase,integrase,transposase,plate,tRNA,head,tail,portal,capsid,lysis	Salmonella_phage(71.74%)	60	444623:444638	500074:500089
444623:444638	attL	GCTGGCGCTGGAACTG	NA	NA	NA	NA
WP_001285161.1|445058_446006_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.9	8.4e-07
WP_000114992.1|446021_446531_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	2.6e-18
WP_000124521.1|446662_447787_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000460663.1|447758_448232_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_001129710.1|448258_448801_+	DNA topoisomerase	NA	NA	NA	NA	NA
WP_001063622.1|448805_449378_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	S4VW33	Pandoravirus	27.2	3.8e-10
WP_000388662.1|449382_450201_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_001070570.1|450197_450455_+	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
WP_001285635.1|450430_450985_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_001541181.1|456895_457744_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000840996.1|457850_458189_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_000502114.1|458296_458755_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000972391.1|460336_460555_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001011760.1|460645_461746_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|461742_462228_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|462224_465302_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|465294_465414_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|465428_465731_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|465785_466301_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|466310_467483_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905027.1|467625_468192_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_050190236.1|468222_468726_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	71.3	2.1e-57
WP_000805568.1|468725_469319_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|469290_469731_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_048667453.1|469733_471140_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	75.3	5.2e-154
WP_001086816.1|471136_471742_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|471734_472643_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|472629_472989_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|472985_473564_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|473632_474079_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001039939.1|474071_474503_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_001080928.1|474598_475027_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|475023_475401_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001069905.1|475402_475915_-	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000171568.1|475895_476111_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|476114_476318_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|476317_476782_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|476877_477528_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|477531_478590_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216244.1|478606_479440_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|479582_481349_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|481348_482386_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|482420_483161_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|483157_484072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|484685_485564_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|485672_485972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|486039_486228_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|486381_488796_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|488792_489650_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|489646_489874_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|489873_490107_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|490174_490516_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|490633_490930_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|490937_491447_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|491479_491701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|491826_492396_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|492411_492603_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|492791_493844_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|494469_494568_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|494707_496354_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
500074:500089	attR	GCTGGCGCTGGAACTG	NA	NA	NA	NA
>prophage 2
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	763864	857537	4758451	integrase,terminase,plate,head,tail,portal,capsid,lysis	Salmonella_phage(81.63%)	105	765037:765053	862767:862783
WP_000089603.1|763864_765016_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
765037:765053	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|765112_765580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|765791_766667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|766854_767217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|767173_768088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|768106_768847_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|768825_769512_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|769547_770048_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|770057_770627_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|770646_772737_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|772733_773492_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|773728_773983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|773982_774222_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|774251_774614_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|774623_774998_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|774994_775648_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|775647_776547_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|776536_778015_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|778001_778451_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|781441_781828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|781982_782375_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|782371_783340_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|783354_784785_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|785117_786623_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000993574.1|786658_787048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|787271_787514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|787918_789166_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000502502.1|789150_789792_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|790002_790545_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|791810_792731_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_001020123.1|793454_793757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|793852_794233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|794603_794813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|794830_795283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|795279_795576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|795653_796112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|796200_798150_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|798221_799130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022217.1|799203_800103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|800177_800504_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|800603_800873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|801004_802279_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|802498_802876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|802962_803181_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|803248_804349_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|804345_804831_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_161976233.1|804830_807377_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000763315.1|807603_807723_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|807737_808040_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|808094_808610_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|808619_809792_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|809894_810113_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|810326_811049_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|811246_811654_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|811660_813280_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|813276_813882_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|813874_814783_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|814769_815129_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|815125_815704_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|815772_816219_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039961.1|816211_816643_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_024131238.1|816738_817167_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|817163_817541_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|817545_818055_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|818035_818251_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|818254_818458_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|818457_818922_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|819015_819666_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|819669_820734_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|820750_821584_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|821726_823493_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|823492_824536_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|824584_825280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|825299_826364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|826360_827425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|827434_827653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|827748_827982_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|827993_828182_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000301193.1|828349_830758_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_000104130.1|830748_831609_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|831605_832190_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|832186_832414_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|832413_832647_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|832714_833056_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|833019_833220_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|833227_833737_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|833769_834012_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|834128_834761_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|834764_835790_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|836896_837154_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|837164_838055_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|838054_838801_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|839102_841073_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|841092_842397_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|842419_843115_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|843140_843935_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|843944_845012_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|845056_846793_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_072075479.1|846792_849288_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|849311_850358_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|850360_851638_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|851882_852422_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|853275_854787_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|854770_856360_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|856523_857537_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
862767:862783	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 3
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	1009713	1022374	4758451	integrase	Enterobacteria_phage(55.56%)	13	1000248:1000261	1013379:1013392
1000248:1000261	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|1009713_1011204_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|1011674_1012940_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|1013002_1014079_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
1013379:1013392	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_000700163.1|1014075_1015134_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000493739.1|1015123_1016287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|1016562_1017129_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|1017144_1017384_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_001779443.1|1017387_1018131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000556588.1|1018670_1018937_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	5.8e-30
WP_015701354.1|1018933_1019485_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_001216603.1|1019481_1019709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000795388.1|1019705_1020026_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000783716.1|1020040_1022374_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	86.5	0.0e+00
>prophage 4
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	1675782	1681813	4758451		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|1675782_1675929_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|1675944_1676088_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|1677077_1679000_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|1679016_1679271_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|1679239_1679629_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|1680871_1681813_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 5
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	2001374	2011881	4758451		Enterobacteria_phage(37.5%)	10	NA	NA
WP_048661701.1|2001374_2002778_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.4e-21
WP_000981469.1|2002955_2003849_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|2004225_2005311_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|2005310_2006210_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|2006257_2007136_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|2007136_2007688_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|2007693_2008668_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|2008683_2009457_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|2009461_2010541_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|2010567_2011881_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 6
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	2095623	2102856	4758451		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|2095623_2096043_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|2096045_2097314_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|2097759_2097972_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|2097982_2098171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2098431_2099616_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|2100265_2100577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|2100656_2101352_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|2101425_2102856_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	2306743	2311155	4758451		Escherichia_phage(50.0%)	6	NA	NA
WP_000281950.1|2306743_2307157_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|2307173_2307902_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|2308093_2308636_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|2308783_2309161_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|2309233_2310043_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_000497451.1|2310915_2311155_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 8
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	2492201	2565806	4758451	integrase,transposase,plate,protease,tRNA,tail,capsid	Burkholderia_virus(39.02%)	87	2531693:2531709	2564714:2564730
WP_000168626.1|2492201_2493476_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|2494224_2494830_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|2494934_2496440_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|2497040_2497676_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|2497675_2498368_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|2498370_2498991_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|2498994_2500053_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|2500053_2502075_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|2502067_2502646_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|2502645_2503227_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|2503303_2503744_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|2503832_2504048_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|2504346_2504472_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|2504679_2505720_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|2505793_2506795_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000753325.1|2507500_2509009_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|2509111_2510287_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|2510486_2512133_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|2512300_2513704_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|2513700_2514630_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|2514705_2516007_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|2516117_2517824_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|2517976_2519128_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_001080045.1|2519608_2520340_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|2520466_2520802_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|2520863_2522246_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|2522526_2523099_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_057483654.1|2523188_2523644_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	49.4	1.2e-32
WP_024131175.1|2523654_2524188_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_024134057.1|2524198_2524660_+|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	53.9	5.9e-38
WP_001802272.1|2524670_2525174_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|2525173_2525791_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_000002041.1|2525797_2526766_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	54.8	2.2e-63
WP_000852584.1|2526768_2527347_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|2527339_2528443_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|2528433_2528781_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|2528837_2529365_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|2529361_2530516_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|2530503_2530716_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|2530715_2531600_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|2531599_2534065_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
2531693:2531709	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|2534158_2534296_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|2534240_2534576_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|2534673_2534955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|2534957_2535482_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|2535478_2536906_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|2536895_2537147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|2537146_2537611_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|2537610_2538057_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_048661830.1|2538058_2538397_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|2538406_2539360_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|2539374_2540490_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|2540704_2541163_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|2541165_2541987_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|2541967_2543464_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|2543463_2545005_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|2545055_2545601_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|2545600_2545912_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|2545911_2546238_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_050302473.1|2546875_2547604_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	56.9	5.0e-60
WP_000793143.1|2547606_2547957_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|2548200_2548797_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_144079282.1|2548840_2549224_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	58.9	1.7e-27
WP_000567456.1|2549233_2549398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|2549401_2551171_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|2551181_2552348_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|2552350_2552620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2552647_2553178_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|2553466_2553739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|2553748_2554051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2554047_2554431_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|2554438_2554639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2554635_2555319_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|2555315_2555546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|2555535_2555751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|2555743_2556193_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|2556164_2556554_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|2556735_2557680_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|2558206_2559736_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|2559746_2561135_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|2561309_2562344_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|2562760_2563123_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|2563109_2563439_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|2563473_2564295_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|2564563_2564815_-	acid shock protein	NA	NA	NA	NA	NA
2564714:2564730	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|2565208_2565391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|2565347_2565806_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	3006439	3084641	4758451	terminase,transposase,protease,plate,head,tail,holin	Salmonella_phage(70.0%)	92	NA	NA
WP_000938184.1|3006439_3007120_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|3007327_3007786_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|3008449_3009109_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|3009195_3009525_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|3009521_3009803_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|3010539_3010998_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|3012129_3013341_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|3013398_3013716_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|3013760_3014174_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|3014347_3015010_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|3015104_3015563_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|3015598_3017653_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|3017776_3018223_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|3018241_3020395_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|3020381_3020987_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|3021203_3021713_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|3022068_3023121_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|3023192_3023645_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|3023830_3025591_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|3025659_3026178_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|3026277_3026445_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|3026698_3027262_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|3027258_3028899_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|3028903_3030157_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|3030171_3032079_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|3032091_3034200_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|3034298_3035408_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|3035404_3035947_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|3036112_3037123_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|3037330_3039943_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|3040959_3041661_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|3042582_3043101_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|3043115_3044627_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_048661805.1|3044626_3045307_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.2	3.4e-127
WP_001197092.1|3045303_3046503_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|3046503_3046857_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|3047097_3047853_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|3047911_3048340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|3048339_3049071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|3049265_3049601_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|3049597_3050629_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|3050631_3050934_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|3050937_3051588_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|3051587_3053540_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|3053717_3054170_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|3054173_3054614_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|3054625_3055771_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|3055774_3056338_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|3056312_3056702_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|3056688_3057243_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|3057239_3057647_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|3057612_3057981_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_000627464.1|3058022_3058964_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|3058975_3059473_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|3059477_3060710_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|3060724_3061462_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|3061346_3062816_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|3062815_3064219_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|3064184_3064937_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|3065026_3065254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|3065350_3065728_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|3065770_3066310_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|3066306_3066921_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|3066920_3067202_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|3067188_3067578_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|3067794_3068244_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|3068379_3068505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|3068903_3069701_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|3069690_3069837_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|3069833_3070445_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|3070653_3071256_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001217670.1|3071590_3071830_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|3072014_3072512_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|3072522_3072702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208074.1|3073547_3074120_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|3074123_3074597_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|3074596_3075121_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|3075117_3075465_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|3075475_3076225_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|3076227_3077211_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|3077295_3077670_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|3077635_3077872_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|3078001_3078406_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|3078694_3078895_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|3078985_3079282_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|3079287_3080073_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|3080069_3080750_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|3080827_3081892_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|3081888_3082770_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|3082775_3083015_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|3083055_3083304_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|3083348_3084641_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
>prophage 10
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	3155579	3162891	4758451	protease,integrase	Ralstonia_phage(16.67%)	7	3150635:3150649	3161627:3161641
3150635:3150649	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|3155579_3155957_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|3156118_3156316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|3156527_3158804_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|3158834_3159155_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3159478_3159700_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|3159829_3161776_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
3161627:3161641	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|3161772_3162891_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 11
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	3775489	3862650	4758451	plate,tRNA,tail	Salmonella_phage(40.0%)	67	NA	NA
WP_000118732.1|3775489_3776833_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|3776836_3777373_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|3777439_3777925_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|3778161_3778587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|3778558_3778960_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|3780544_3781087_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|3781150_3781441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|3781526_3784190_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|3784557_3785460_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|3785446_3786271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|3786267_3786762_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|3786777_3788661_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|3788657_3789653_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|3791247_3791979_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|3792042_3792510_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|3792506_3793229_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|3793263_3794019_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|3794090_3795458_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|3795513_3796284_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_048661845.1|3796361_3797162_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|3797293_3798469_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|3798573_3799488_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|3799508_3800312_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|3806343_3808917_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|3809046_3809778_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|3809774_3810755_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|3810886_3811624_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|3811895_3812234_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|3812337_3812385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|3812484_3813645_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|3813605_3814514_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|3814571_3815693_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|3815702_3816773_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|3817212_3817731_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|3817723_3818944_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|3819100_3819448_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|3819488_3820256_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3820300_3820849_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3820867_3821116_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3821459_3822821_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3822986_3823778_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3823797_3825084_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|3825204_3825762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|3825843_3826434_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3826557_3827436_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3827521_3829183_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3829331_3829670_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|3829835_3830126_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3830115_3830592_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3830741_3831224_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_048661924.1|3831843_3842718_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA	NA
WP_000533850.1|3842781_3844191_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196138.1|3844187_3846368_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3846375_3847539_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|3848081_3848855_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|3848823_3848997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|3849258_3849477_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3849567_3850668_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3850664_3851150_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|3851146_3854224_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|3854216_3854336_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3854350_3854653_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3854707_3855223_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3855232_3856405_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905027.1|3856547_3857114_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|3857797_3858913_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|3858993_3862650_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 12
NZ_LT904883	Salmonella enterica subsp. enterica serovar Typhi strain ERL103914 chromosome 1	4758451	4180052	4223234	4758451	integrase,transposase,protease,tRNA,bacteriocin	Bacillus_virus(25.0%)	47	4201548:4201561	4229496:4229509
WP_001204111.1|4180052_4180511_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|4180700_4181780_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|4181881_4183045_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|4183066_4184113_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|4184486_4184912_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|4184937_4185516_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|4185516_4186224_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|4186211_4186889_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|4186882_4187539_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|4187643_4188102_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|4188290_4190282_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|4190557_4191316_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|4191416_4192337_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|4192564_4194541_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|4194549_4194681_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|4194814_4194979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|4194975_4195275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|4195330_4196485_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|4196977_4198372_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|4198450_4198948_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|4199043_4199751_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|4199827_4200559_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|4200578_4201526_+	glutathione synthase	NA	NA	NA	NA	NA
4201548:4201561	attL	GCGCTTACCGGGCC	NA	NA	NA	NA
WP_001053167.1|4201741_4202305_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|4202304_4202721_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|4202767_4203454_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|4203583_4204564_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|4204581_4205286_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|4205304_4205871_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|4205867_4206158_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|4206165_4206759_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|4206751_4207888_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|4207978_4208986_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|4209118_4210165_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|4210483_4210942_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|4211064_4211784_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|4211833_4212160_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|4212159_4212879_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|4213033_4214086_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|4214113_4214389_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|4214501_4215587_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|4215803_4217060_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|4219670_4220378_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|4220719_4221004_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_014341481.1|4221188_4221533_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_001141622.1|4222653_4222971_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000768134.1|4222967_4223234_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
4229496:4229509	attR	GGCCCGGTAAGCGC	NA	NA	NA	NA
