The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	515177	552713	3938685	tail,terminase,portal,integrase,head,capsid	Sinorhizobium_phage(69.7%)	46	542825:542840	555060:555075
WP_017274118.1|515177_517202_-|tail	tail fiber domain-containing protein	tail	A0A2L2R219	Sinorhizobium_phage	30.9	4.1e-51
WP_017274117.1|517213_518728_-	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	84.2	3.9e-256
WP_029727560.1|518966_521714_-|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	61.4	7.6e-258
WP_017275184.1|521720_522125_-	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	71.6	7.1e-48
WP_013843999.1|522196_522469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028004752.1|522615_523206_-	DUF2163 domain-containing protein	NA	A0A291AUM8	Sinorhizobium_phage	72.1	2.0e-75
WP_028004751.1|523202_523853_-	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	70.0	4.3e-79
WP_029727561.1|523852_525724_-|tail	phage tail tape measure protein	tail	A0A291AUM6	Sinorhizobium_phage	69.3	7.8e-222
WP_017265702.1|526102_526297_-	hypothetical protein	NA	A0A291AUN4	Sinorhizobium_phage	74.2	1.5e-19
WP_011975792.1|526758_527169_-|tail	tail protein	tail	A0A291AUM5	Sinorhizobium_phage	76.5	3.7e-52
WP_017274986.1|527261_527726_-	hypothetical protein	NA	A0A291AUM4	Sinorhizobium_phage	66.2	8.8e-50
WP_029727562.1|527727_528024_-	hypothetical protein	NA	A0A291AUM3	Sinorhizobium_phage	64.9	4.6e-28
WP_028004747.1|528026_528353_-	hypothetical protein	NA	A0A291AUL9	Sinorhizobium_phage	70.8	1.2e-34
WP_028004746.1|528349_528817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013844546.1|528892_529924_-|capsid	major capsid protein	capsid	A0A291AUL7	Sinorhizobium_phage	86.2	3.5e-176
WP_013844547.1|529951_530308_-|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	84.7	1.5e-46
WP_013844548.1|530310_530862_-	hypothetical protein	NA	A0A291AUL6	Sinorhizobium_phage	83.0	1.1e-46
WP_028004745.1|530887_531793_-	S49 family peptidase	NA	A0A291AUM2	Sinorhizobium_phage	86.4	1.3e-145
WP_029727563.1|531789_533514_-|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	84.2	8.9e-289
WP_028004743.1|533510_533747_-|head,tail	head-to-tail joining protein	head,tail	A0A291AUL5	Sinorhizobium_phage	78.2	4.9e-25
WP_028004742.1|533757_535800_-|terminase	phage terminase large subunit family protein	terminase	A0A291AUK9	Sinorhizobium_phage	89.2	0.0e+00
WP_017274591.1|535796_536438_-	hypothetical protein	NA	A0A291AUL0	Sinorhizobium_phage	58.2	3.6e-54
WP_017274500.1|536587_537334_-	hypothetical protein	NA	A0A291AUL1	Sinorhizobium_phage	83.5	4.3e-115
WP_017267129.1|537501_538296_-	hypothetical protein	NA	R9TRT9	Rhizobium_phage	44.8	1.5e-52
WP_017273558.1|538573_540382_-	DNA primase family protein	NA	A0A0P0IX98	Lactobacillus_phage	37.9	6.2e-51
WP_017267131.1|540383_541613_-	hypothetical protein	NA	R9TNC4	Rhizobium_phage	48.7	7.6e-101
WP_013843977.1|541609_541945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013843976.1|541944_542457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017267132.1|542470_542842_-	hypothetical protein	NA	NA	NA	NA	NA
542825:542840	attL	GAGGCGGATCTGGCTC	NA	NA	NA	NA
WP_026030356.1|542838_543108_-	hypothetical protein	NA	R9TRS8	Rhizobium_phage	76.3	3.1e-07
WP_013843974.1|543104_543284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020493266.1|543280_543559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017267134.1|543555_543807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013843972.1|544151_544361_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013843971.1|544443_545139_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013843969.1|545546_545783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013843968.1|545784_545985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017267135.1|545987_546668_+	hypothetical protein	NA	R9TQJ1	Rhizobium_phage	46.3	1.9e-40
WP_017267136.1|546671_547166_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	57.9	7.7e-44
WP_013843965.1|547177_547597_+	DUF2312 domain-containing protein	NA	Q8W6H2	Sinorhizobium_phage	66.7	9.4e-35
WP_013843964.1|547596_547962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017267137.1|547954_549073_+	DNA polymerase III subunit beta	NA	R9TRR6	Rhizobium_phage	37.8	1.9e-66
WP_017267138.1|549082_549586_+	hypothetical protein	NA	A0A218M329	Acidovorax_phage	35.5	1.6e-12
WP_017273560.1|549582_549951_+	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	81.3	3.8e-56
WP_017267140.1|550129_551287_+|integrase	site-specific integrase	integrase	A0A067XRF8	Caulobacter_phage	29.1	2.1e-07
WP_014528943.1|551465_552713_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	31.2	6.3e-18
555060:555075	attR	GAGCCAGATCCGCCTC	NA	NA	NA	NA
>prophage 2
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	904170	962457	3938685	tRNA,integrase,transposase,terminase	Mycobacterium_phage(22.22%)	55	928380:928394	958277:958291
WP_088194165.1|904170_905700_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.4	1.0e-118
WP_017275341.1|905782_906106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017267198.1|906287_906866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017267197.1|906980_907616_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	34.7	7.4e-15
WP_020479373.1|907648_908713_-	DUF4917 family protein	NA	NA	NA	NA	NA
WP_017267195.1|908837_910151_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003534379.1|911411_912047_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010968450.1|912077_912500_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_010968449.1|912877_913393_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	NA	NA	NA	NA	NA
WP_003534376.1|913442_914663_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_003534375.1|914667_915474_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010969728.1|915626_916703_+|transposase	ISAs1-like element ISRm21 family transposase	transposase	NA	NA	NA	NA
WP_010969728.1|916915_917992_+|transposase	ISAs1-like element ISRm21 family transposase	transposase	NA	NA	NA	NA
WP_010968448.1|918048_919065_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014530011.1|919144_921298_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003534369.1|921665_921935_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_010968446.1|922173_923892_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003534367.1|924200_925136_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003534366.1|925148_925556_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_010968445.1|925715_928385_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.6	3.4e-21
928380:928394	attL	CGTCATTCCGTTCCG	NA	NA	NA	NA
WP_003534364.1|928490_929183_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_010968444.1|929188_930817_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003534362.1|930862_931480_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_010968443.1|931702_933358_+	MFS transporter	NA	NA	NA	NA	NA
WP_003533407.1|933565_934804_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_003533410.1|934841_935447_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_003533411.1|935497_936109_-	LysE family translocator	NA	NA	NA	NA	NA
WP_003533413.1|936184_936508_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_014527027.1|936616_938497_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	35.8	3.7e-46
WP_013844995.1|938756_939203_+	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_003533418.1|939205_940186_+	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_010968439.1|940192_940885_+	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	28.6	2.0e-13
WP_010968438.1|940977_941346_+	VOC family protein	NA	NA	NA	NA	NA
WP_003533421.1|941477_941615_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_003533422.1|941785_942640_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_014530010.1|942664_943417_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010968436.1|943570_944350_+	cytochrome c family protein	NA	NA	NA	NA	NA
WP_013844994.1|944521_945619_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003533430.1|945841_946786_-	AEC family transporter	NA	NA	NA	NA	NA
WP_010968434.1|946989_947259_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_013844993.1|947272_948199_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010968432.1|948329_949808_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	29.5	2.1e-28
WP_010968431.1|949894_951055_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_014530006.1|953062_954337_-	MFS transporter	NA	NA	NA	NA	NA
WP_010968428.1|954445_955468_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_017264514.1|955486_955708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010968426.1|955725_955890_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_029728035.1|956151_957453_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A077KET4	Ralstonia_phage	42.5	5.4e-81
WP_148707586.1|957449_957920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029728033.1|957993_958206_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_148707587.1|958214_958469_+	hypothetical protein	NA	NA	NA	NA	NA
958277:958291	attR	CGTCATTCCGTTCCG	NA	NA	NA	NA
WP_080654694.1|958502_960074_+	hypothetical protein	NA	A0A2D1GN57	Marinobacter_phage	39.8	3.0e-49
WP_029728030.1|960402_960648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033052617.1|961240_961516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071221476.1|961644_962457_+|terminase	terminase small subunit	terminase	A0A2I7RB14	Vibrio_phage	51.0	1.0e-32
>prophage 3
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	1522681	1531035	3938685	transposase	Acidithiobacillus_phage(33.33%)	8	NA	NA
WP_013844892.1|1522681_1524463_-	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.1	1.6e-11
WP_012477343.1|1524754_1525492_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_014531024.1|1525504_1527034_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_003528560.1|1527349_1527829_-	purine-binding chemotaxis protein CheW	NA	Q56AR1	Bacillus_thuringiensis_phage	24.0	4.3e-07
WP_003528561.1|1528006_1528930_-	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	32.3	5.1e-25
WP_003528562.1|1529085_1529520_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010970346.1|1529728_1530208_+	VOC family protein	NA	NA	NA	NA	NA
WP_010970345.1|1530249_1531035_-	aminoglycoside 3'-phosphotransferase	NA	Q75ZG1	Hepacivirus	54.5	5.2e-71
>prophage 4
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	1843324	1894946	3938685	tail,tRNA,portal,terminase,head,protease,capsid	Sinorhizobium_phage(33.33%)	52	NA	NA
WP_010970161.1|1843324_1844686_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_003527585.1|1844785_1846723_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A9YVR1	Ostreococcus_tauri_virus	40.3	7.3e-114
WP_003527581.1|1847046_1848399_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010970160.1|1848846_1849674_+	porin family protein	NA	NA	NA	NA	NA
WP_010970159.1|1850822_1852001_+	phosphoserine transaminase	NA	NA	NA	NA	NA
WP_014529888.1|1852082_1853678_+	phosphoglycerate dehydrogenase	NA	A0A2R8FCS0	Cedratvirus	37.4	7.7e-45
WP_010970157.1|1853814_1854705_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003527570.1|1854909_1856208_+	adenylosuccinate synthase	NA	A0A0B5J049	Pandoravirus	32.9	2.9e-58
WP_010970156.1|1856271_1858533_+	membrane protein	NA	NA	NA	NA	NA
WP_003527567.1|1858663_1859569_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	32.2	7.7e-34
WP_014529887.1|1859766_1860798_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010970155.1|1860827_1861211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003527563.1|1861215_1862043_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010970154.1|1862273_1863356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010970153.1|1863504_1864107_-	DUF1134 domain-containing protein	NA	NA	NA	NA	NA
WP_003527560.1|1864474_1865137_+	histidine phosphotransferase	NA	NA	NA	NA	NA
WP_026029688.1|1865385_1865748_+	response regulator	NA	NA	NA	NA	NA
WP_003527557.1|1866122_1866824_-	response regulator transcription factor	NA	F4YXP8	Roseobacter_phage	48.1	8.7e-17
WP_003527555.1|1867374_1867725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003527553.1|1867897_1868179_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003527546.1|1868329_1868605_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_013844833.1|1868791_1869757_+	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	36.4	5.9e-08
WP_013844832.1|1870020_1871217_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_029727770.1|1871758_1871959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_128206848.1|1872478_1872697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088194176.1|1872767_1873367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029727767.1|1873387_1873753_-	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	71.3	2.0e-41
WP_029727766.1|1874189_1875158_-	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	88.0	9.1e-166
WP_029727764.1|1875994_1876330_-	hypothetical protein	NA	A0A291AUN7	Sinorhizobium_phage	70.8	2.2e-26
WP_029727763.1|1876316_1876664_-	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	49.1	3.7e-21
WP_029727762.1|1876663_1877797_-	hypothetical protein	NA	A0A291AUN5	Sinorhizobium_phage	37.6	5.5e-29
WP_029727761.1|1877808_1879323_-	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	87.8	5.4e-266
WP_029727760.1|1879322_1879547_-	hypothetical protein	NA	A0A291AUN2	Sinorhizobium_phage	40.5	9.8e-07
WP_029727759.1|1879562_1882256_-|tail	tail protein	tail	G8DH58	Emiliania_huxleyi_virus	36.4	5.9e-106
WP_029727758.1|1882257_1882695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727757.1|1882694_1883363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727756.1|1883372_1884011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727755.1|1884010_1885969_-|tail	phage tail length tape measure family protein	tail	A0A2D2W291	Sinorhizobium_phage	32.4	1.3e-49
WP_029727754.1|1885980_1886238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158529783.1|1886239_1886389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727753.1|1886391_1886796_-	gene transfer agent family protein	NA	B4UTQ4	Rhizobium_phage	31.6	2.7e-10
WP_029727752.1|1886795_1887245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028004794.1|1887254_1887665_-	DUF3168 domain-containing protein	NA	A0A141GEW7	Brucella_phage	38.3	1.9e-16
WP_029727751.1|1887664_1888171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727750.1|1888170_1888521_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_164901948.1|1888507_1888684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727749.1|1888695_1889010_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_050574230.1|1889011_1889593_-	hypothetical protein	NA	F8TVA1	EBPR_siphovirus	50.0	2.1e-32
WP_029727747.1|1889589_1890969_-|portal	phage portal protein	portal	F8TVA0	EBPR_siphovirus	58.9	5.5e-132
WP_029727746.1|1890968_1891226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727745.1|1891282_1893241_-|capsid	phage major capsid protein	capsid	S4TNE3	Salmonella_phage	40.1	1.1e-112
WP_029727744.1|1893251_1894946_-|terminase	terminase large subunit	terminase	Q3HQS7	Burkholderia_phage	58.0	1.5e-184
>prophage 5
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	2326972	2357682	3938685	holin,transposase	Planktothrix_phage(33.33%)	31	NA	NA
WP_012477342.1|2326972_2328502_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	1.6e-119
WP_014529839.1|2328617_2328872_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_010969927.1|2328994_2329369_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003536349.1|2329374_2329767_-	globin	NA	NA	NA	NA	NA
WP_010969926.1|2329894_2330299_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_003536345.1|2330295_2330568_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010969925.1|2330704_2331265_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003536339.1|2331312_2331654_+	EamA family transporter	NA	NA	NA	NA	NA
WP_014529838.1|2331833_2332889_+	dipeptidase	NA	NA	NA	NA	NA
WP_003536336.1|2332936_2334577_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029728269.1|2334618_2335662_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010969922.1|2335658_2336591_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010969921.1|2336587_2337421_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.9	1.2e-09
WP_003536332.1|2337417_2338185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.7e-24
WP_010969920.1|2338510_2339428_-	sugar kinase	NA	NA	NA	NA	NA
WP_013844761.1|2339562_2341206_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_086017820.1|2341268_2342215_-|transposase	IS630-like element ISRm2011-2 family transposase	transposase	S5VXX4	Leptospira_phage	24.7	1.0e-12
WP_013844760.1|2342444_2344142_-	adenine deaminase	NA	NA	NA	NA	NA
WP_010969917.1|2344229_2345558_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010969916.1|2345647_2346181_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_013844758.1|2346326_2346671_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013844757.1|2346789_2347533_-	HugZ family protein	NA	NA	NA	NA	NA
WP_010969913.1|2347566_2348616_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	33.7	1.9e-20
WP_013844756.1|2348612_2349458_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_010969911.1|2349614_2350571_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_010969910.1|2350857_2351445_+	thymidine kinase	NA	A0A0K2FHC3	Enterobacter_phage	54.7	4.1e-52
WP_003535848.1|2351605_2352694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529834.1|2352755_2353904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010969907.1|2353907_2355824_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010969906.1|2355936_2356341_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_088194098.1|2356518_2357682_-|transposase	IS4-like element ISRm16 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	2412749	2469342	3938685	tail,portal,transposase,head,tRNA	Vibrio_phage(10.0%)	60	NA	NA
WP_010969865.1|2412749_2413091_+|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_003532899.1|2413103_2414486_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	22.9	8.8e-05
WP_013844742.1|2414520_2415222_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.2	3.4e-37
WP_003532901.1|2415525_2416002_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010969864.1|2416194_2416461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013844741.1|2416786_2417416_-	DUF1236 domain-containing protein	NA	NA	NA	NA	NA
WP_003532904.1|2417636_2417792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003532905.1|2417901_2418543_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	30.5	7.2e-18
WP_003532907.1|2418613_2419039_-	BA14K family protein	NA	NA	NA	NA	NA
WP_003532915.1|2419182_2419398_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	50.0	9.1e-10
WP_029727816.1|2420067_2420970_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010969862.1|2421158_2422349_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA	NA
WP_003532922.1|2422474_2422756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003532924.1|2422748_2422946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010969860.1|2423343_2424546_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_013844739.1|2424666_2425533_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014529157.1|2425557_2426319_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003532933.1|2426431_2427322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010969856.1|2427360_2428566_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.9	6.7e-41
WP_003532937.1|2428891_2429341_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.4	3.0e-15
WP_010969855.1|2429574_2431578_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.5	3.5e-87
WP_010969854.1|2431623_2433534_+	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	35.7	1.1e-74
WP_010969853.1|2433793_2434981_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.8	9.2e-35
WP_013844736.1|2435003_2436038_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	4.1e-15
WP_003532953.1|2436470_2438525_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.1e-35
WP_003532955.1|2438746_2439037_+	GYD domain-containing protein	NA	NA	NA	NA	NA
WP_003537532.1|2439404_2439974_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003537534.1|2440075_2440429_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_017271805.1|2440542_2440770_+	YjbQ family protein	NA	NA	NA	NA	NA
WP_010969728.1|2440783_2441860_+|transposase	ISAs1-like element ISRm21 family transposase	transposase	NA	NA	NA	NA
WP_003537547.1|2442249_2442654_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003537549.1|2442910_2443267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003537551.1|2443354_2444143_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_014529161.1|2444475_2444895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271689.1|2445736_2445967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529163.1|2445963_2446230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529164.1|2446248_2447817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529165.1|2447827_2448325_-	hypothetical protein	NA	Q8W6L2	Sinorhizobium_phage	45.5	1.8e-29
WP_014529166.1|2448324_2449479_-	hypothetical protein	NA	A0A1Y0SVH2	Sinorhizobium_phage	57.9	1.6e-31
WP_014529167.1|2449493_2452667_-	host specificity protein J	NA	Q3HQU5	Burkholderia_phage	37.2	6.7e-133
WP_014529168.1|2452663_2453401_-|tail	tail assembly protein	tail	A0A1B1IV58	uncultured_Mediterranean_phage	25.9	4.1e-09
WP_017271691.1|2453397_2454150_-	C40 family peptidase	NA	F1C573	Cronobacter_phage	34.5	8.1e-29
WP_014529170.1|2454155_2454851_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	42.3	2.4e-43
WP_014529171.1|2454847_2455231_-|tail	phage tail protein	tail	K7P7R1	Enterobacteria_phage	31.3	4.4e-07
WP_014529172.1|2455230_2457420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529173.1|2457429_2457876_-	phage protein, HK97 gp10 family	NA	NA	NA	NA	NA
WP_020479474.1|2457875_2458082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529174.1|2458035_2458488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271694.1|2458497_2459157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529176.1|2459451_2461245_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_014529177.1|2461258_2463082_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_017271695.1|2463105_2463492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271696.1|2463488_2463665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271697.1|2463693_2464080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017271698.1|2464076_2464415_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_017271699.1|2464411_2465131_-	glycoside hydrolase family 25 protein	NA	I3VYU7	Thermoanaerobacterium_phage	27.5	1.1e-06
WP_014529181.1|2465112_2465664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529182.1|2465667_2466786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529183.1|2466782_2467946_-	collagen-like protein	NA	NA	NA	NA	NA
WP_014529184.1|2467923_2469342_-|portal	phage portal protein	portal	A0A2H4JFN7	uncultured_Caudovirales_phage	23.6	4.5e-12
>prophage 7
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	3246785	3286778	3938685	tail,terminase,portal,head,tRNA,capsid	Sinorhizobium_phage(90.0%)	59	NA	NA
WP_010969351.1|3246785_3247535_-|tRNA	alanyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_014529584.1|3247542_3248583_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	38.1	3.3e-44
WP_010969349.1|3248897_3249746_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003528289.1|3249939_3250179_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010969348.1|3250175_3250574_+	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_003528293.1|3250650_3250977_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_010969347.1|3250973_3251318_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_014529585.1|3251522_3251723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529586.1|3251722_3252100_-	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	65.0	8.4e-43
WP_014529587.1|3252096_3252636_-	hypothetical protein	NA	A0A291AUJ2	Sinorhizobium_phage	45.2	1.1e-27
WP_014529588.1|3252632_3253004_-	DUF4326 domain-containing protein	NA	A0A291AUQ7	Sinorhizobium_phage	39.7	6.4e-19
WP_017265688.1|3253000_3253183_-	hypothetical protein	NA	A0A291AUC9	Sinorhizobium_phage	54.5	1.9e-08
WP_014529589.1|3253175_3253499_-	hypothetical protein	NA	A0A291AUJ5	Sinorhizobium_phage	47.0	1.3e-15
WP_014529590.1|3253495_3253828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017265689.1|3253843_3254089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529592.1|3254085_3254259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017265691.1|3254378_3254612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529594.1|3254705_3254888_-	hypothetical protein	NA	A0A291AUK1	Sinorhizobium_phage	41.7	2.6e-05
WP_014529595.1|3255852_3256518_-	helix-turn-helix domain-containing protein	NA	A0A1X9HW95	Ruegeria_phage	40.3	9.1e-24
WP_014529596.1|3257079_3257535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529597.1|3257534_3257756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529598.1|3258001_3258208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014529599.1|3258204_3259728_+	S-adenosylmethionine-binding protein	NA	A0A2I7QIB9	Vibrio_phage	28.2	2.6e-13
WP_014529600.1|3259724_3260030_+	hypothetical protein	NA	A0A291AUK8	Sinorhizobium_phage	55.0	3.3e-21
WP_020479328.1|3260035_3260284_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_014529601.1|3260394_3261648_+	hypothetical protein	NA	A0A291AUS5	Sinorhizobium_phage	71.5	3.2e-155
WP_014529602.1|3261631_3262291_+	antitermination factor NusG	NA	NA	NA	NA	NA
WP_014529603.1|3262519_3263266_+	hypothetical protein	NA	A0A291AUL1	Sinorhizobium_phage	84.7	3.0e-116
WP_014529604.1|3263414_3264056_+	hypothetical protein	NA	A0A291AUL0	Sinorhizobium_phage	58.9	1.6e-54
WP_049225161.1|3264052_3266095_+|terminase	phage terminase large subunit family protein	terminase	A0A291AUK9	Sinorhizobium_phage	89.5	0.0e+00
WP_014529606.1|3266105_3266342_+	hypothetical protein	NA	A0A291AUL5	Sinorhizobium_phage	79.5	7.6e-26
WP_014529607.1|3266338_3268060_+|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	83.2	9.2e-286
WP_014529608.1|3268056_3268962_+	S49 family peptidase	NA	A0A291AUM2	Sinorhizobium_phage	86.1	3.1e-144
WP_014529609.1|3268987_3269530_+	hypothetical protein	NA	A0A291AUL6	Sinorhizobium_phage	77.5	1.4e-38
WP_014529610.1|3269532_3269889_+|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	84.7	3.1e-47
WP_014529611.1|3269916_3270948_+|capsid	major capsid protein	capsid	A0A291AUL7	Sinorhizobium_phage	87.1	1.9e-177
WP_014529612.1|3271022_3271427_+	hypothetical protein	NA	A0A291AUM1	Sinorhizobium_phage	60.6	6.1e-15
WP_014529613.1|3271423_3271750_+	hypothetical protein	NA	A0A291AUL9	Sinorhizobium_phage	70.8	3.6e-34
WP_014529614.1|3271752_3272046_+	hypothetical protein	NA	A0A291AUM3	Sinorhizobium_phage	66.0	1.0e-27
WP_017265746.1|3272047_3272512_+	hypothetical protein	NA	A0A291AUM4	Sinorhizobium_phage	65.6	2.0e-49
WP_011975792.1|3272605_3273016_+|tail	tail protein	tail	A0A291AUM5	Sinorhizobium_phage	76.5	3.7e-52
WP_014529616.1|3273028_3273430_+	hypothetical protein	NA	A0A291AUM7	Sinorhizobium_phage	77.7	9.9e-50
WP_014529419.1|3273477_3273669_+	hypothetical protein	NA	A0A291AUN4	Sinorhizobium_phage	74.2	1.5e-19
WP_014529617.1|3273669_3273849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529618.1|3273951_3275823_+	hypothetical protein	NA	A0A291AUM6	Sinorhizobium_phage	59.4	6.9e-186
WP_014529619.1|3275822_3276473_+	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	69.1	5.7e-79
WP_014529620.1|3276469_3277060_+	DUF2163 domain-containing protein	NA	A0A291AUM8	Sinorhizobium_phage	72.1	5.3e-76
WP_013843999.1|3277205_3277478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529621.1|3277549_3277954_+	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	70.9	1.6e-47
WP_014529622.1|3277960_3280618_+|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	64.2	9.9e-263
WP_026029902.1|3280617_3282132_+	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	87.6	6.0e-265
WP_014529624.1|3282143_3283277_+	hypothetical protein	NA	A0A2L2R219	Sinorhizobium_phage	42.9	6.1e-36
WP_014529625.1|3283276_3283624_+	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	47.4	1.3e-21
WP_014529626.1|3283610_3283946_+	hypothetical protein	NA	A0A291AUN7	Sinorhizobium_phage	71.9	9.8e-27
WP_014529627.1|3284221_3284491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014529628.1|3284639_3285608_+	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	86.4	1.7e-164
WP_014529629.1|3285607_3285925_+	ammonia monooxygenase	NA	A0A291AUV3	Sinorhizobium_phage	63.9	3.4e-37
WP_014529630.1|3285924_3286209_+	hypothetical protein	NA	A0A076G8H8	Sinorhizobium_phage	61.7	9.2e-26
WP_014529631.1|3286412_3286778_+	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	73.3	3.7e-43
>prophage 8
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	3390722	3426498	3938685	terminase	Mesorhizobium_phage(72.0%)	36	NA	NA
WP_029727610.1|3390722_3391568_-	hypothetical protein	NA	A0A076YL19	Mesorhizobium_phage	55.2	4.6e-73
WP_158529780.1|3393383_3393545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029727611.1|3393549_3393873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029727612.1|3393883_3394108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049225141.1|3394305_3396015_-|terminase	phage terminase large subunit	terminase	A0A076YJ70	Mesorhizobium_phage	76.4	1.7e-252
WP_029727614.1|3396134_3396410_-	hypothetical protein	NA	A0A076YM84	Mesorhizobium_phage	53.9	2.6e-17
WP_029727615.1|3396399_3396633_-	hypothetical protein	NA	A0A076YNX1	Mesorhizobium_phage	60.0	4.0e-11
WP_029727616.1|3396637_3397111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033052464.1|3397110_3398748_-	hypothetical protein	NA	A0A076YL75	Mesorhizobium_phage	49.0	1.1e-49
WP_050574227.1|3398793_3402603_-	hypothetical protein	NA	A0A076YQK7	Mesorhizobium_phage	47.2	9.4e-307
WP_148707593.1|3402656_3404765_-	hypothetical protein	NA	A0A076YM79	Mesorhizobium_phage	34.0	3.2e-83
WP_148707594.1|3405008_3405509_-	hypothetical protein	NA	A0A076YNW7	Mesorhizobium_phage	75.0	7.0e-37
WP_049225140.1|3405541_3405994_-	DUF2833 domain-containing protein	NA	A0A076YJ63	Mesorhizobium_phage	54.8	3.4e-46
WP_127650224.1|3406018_3408490_-	hypothetical protein	NA	A0A076YL68	Mesorhizobium_phage	57.0	1.6e-278
WP_049225139.1|3408492_3409074_-	hypothetical protein	NA	A0A076YQK3	Mesorhizobium_phage	57.3	3.6e-53
WP_049225145.1|3409148_3409949_-	hypothetical protein	NA	A0A076YM75	Mesorhizobium_phage	77.8	3.0e-114
WP_029727624.1|3410583_3410913_-	hypothetical protein	NA	A0A076YQK0	Mesorhizobium_phage	50.0	7.4e-19
WP_029727626.1|3411124_3411511_-	M15 family metallopeptidase	NA	A9DET4	Yersinia_phage	69.0	6.2e-49
WP_029727627.1|3411523_3412333_-	hypothetical protein	NA	L7TQY4	Rhizobium_phage	38.5	7.6e-33
WP_029727628.1|3412441_3414013_-	hypothetical protein	NA	A0A076YM66	Mesorhizobium_phage	62.0	3.9e-182
WP_029727630.1|3414502_3414715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029727632.1|3414937_3415669_-	hypothetical protein	NA	A0A076YQJ3	Mesorhizobium_phage	71.2	1.4e-97
WP_158529781.1|3415678_3415825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080654658.1|3415821_3416148_-	GIY-YIG nuclease family protein	NA	A0A2R8FFZ6	Yersinia_phage	46.1	7.9e-13
WP_080654662.1|3416179_3418141_-	hypothetical protein	NA	A0A076YNV1	Mesorhizobium_phage	68.3	1.2e-257
WP_153414258.1|3418257_3418410_-	hypothetical protein	NA	L7TKB4	Rhizobium_phage	73.3	2.2e-10
WP_080654659.1|3418409_3420314_-	toprim domain-containing protein	NA	A0A2D2W4Z3	Ralstonia_phage	56.2	1.3e-171
WP_029727637.1|3420584_3421091_-	hypothetical protein	NA	J7SCC9	Pseudomonas_phage	27.8	5.3e-08
WP_029727638.1|3421090_3421354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727639.1|3421436_3421658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727640.1|3421654_3422122_-	hypothetical protein	NA	A0A2R2ZGE6	Ralstonia_phage	58.1	8.3e-40
WP_029727641.1|3422125_3422812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727642.1|3422964_3423384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727643.1|3423376_3423649_-	hypothetical protein	NA	A0A076YM53	Mesorhizobium_phage	64.4	6.3e-24
WP_029727644.1|3423712_3423925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029727645.1|3424020_3426498_-	hypothetical protein	NA	A0A076YJ28	Mesorhizobium_phage	58.5	1.1e-279
>prophage 9
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	3438229	3449478	3938685	tRNA	uncultured_Mediterranean_phage(80.0%)	12	NA	NA
WP_010969286.1|3438229_3439768_-	LysM peptidoglycan-binding domain-containing protein	NA	I3PV24	Clostridium_phage	32.8	1.0e-14
WP_010969285.1|3440091_3440745_-	biotin transport regulator	NA	NA	NA	NA	NA
WP_014526709.1|3440916_3441570_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.6	2.6e-15
WP_010969283.1|3441566_3442337_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.9	1.5e-22
WP_003534571.1|3442364_3443648_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.0	8.0e-101
WP_003534569.1|3443784_3444627_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	1.7e-43
WP_010969282.1|3444623_3445271_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003534564.1|3445344_3445551_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	65.9	8.2e-08
WP_010969280.1|3445645_3446755_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	1.4e-29
WP_064744417.1|3446819_3447572_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.2	1.0e-39
WP_014526708.1|3447531_3448371_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.8e-32
WP_010969277.1|3448443_3449478_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.0e-22
>prophage 10
NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	3938685	3452499	3520335	3938685	protease,transposase,tRNA	uncultured_Mediterranean_phage(28.57%)	59	NA	NA
WP_010969275.1|3452499_3454257_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003534550.1|3454354_3455572_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA	NA
WP_003534548.1|3455788_3456118_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	1.6e-21
WP_010969274.1|3456143_3457607_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003534544.1|3457814_3458606_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003534542.1|3458664_3459471_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_012477246.1|3460613_3461828_-|transposase	IS701-like element ISRm31 family transposase	transposase	NA	NA	NA	NA
WP_010969272.1|3463019_3465863_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.9	1.9e-134
WP_029727649.1|3466176_3466932_-	DUF2497 domain-containing protein	NA	NA	NA	NA	NA
WP_010969270.1|3467156_3468527_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_010969269.1|3468803_3469463_-	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA	NA
WP_010969268.1|3470438_3470864_-	TonB system transport protein ExbD	NA	NA	NA	NA	NA
WP_010969267.1|3470870_3471857_-	tonB-system energizer ExbB	NA	NA	NA	NA	NA
WP_010969266.1|3472077_3474483_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_010969265.1|3474788_3476078_+	citrate (Si)-synthase	NA	NA	NA	NA	NA
WP_010969264.1|3476615_3476900_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_010969263.1|3477099_3478269_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_010969262.1|3478265_3479153_-	LpxI family protein	NA	NA	NA	NA	NA
WP_162145860.1|3479152_3479971_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010969260.1|3479967_3480432_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010969259.1|3480424_3481489_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_010969258.1|3481533_3483864_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003534980.1|3484112_3485237_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_014529665.1|3485367_3486201_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003534985.1|3486200_3486944_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	35.9	2.7e-16
WP_003534987.1|3486980_3487541_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003534989.1|3487592_3488315_-	UMP kinase	NA	NA	NA	NA	NA
WP_003534991.1|3488498_3489422_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_003534993.1|3489674_3490442_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003534995.1|3490627_3491446_-	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_010969255.1|3491587_3492052_+	RidA family protein	NA	NA	NA	NA	NA
WP_010969254.1|3492065_3492791_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_010969253.1|3492795_3493983_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003535003.1|3494018_3494438_+	HIT family protein	NA	NA	NA	NA	NA
WP_003535005.1|3494691_3495063_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003535007.1|3495032_3495779_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010969251.1|3495851_3498368_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.6	2.8e-174
WP_003535011.1|3498377_3498731_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.9	1.5e-12
WP_010969250.1|3499002_3499356_-	phasin family protein	NA	NA	NA	NA	NA
WP_003535016.1|3499597_3499801_-	DUF3126 family protein	NA	NA	NA	NA	NA
WP_003535018.1|3499980_3500808_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003535020.1|3501105_3501885_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003535025.1|3502074_3502320_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010969248.1|3502347_3503511_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_010969247.1|3503565_3504753_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_003535031.1|3505090_3506116_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.4	1.2e-78
WP_014529669.1|3506220_3507414_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010969245.1|3507418_3508573_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003535037.1|3508591_3509368_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	2.1e-32
WP_010969244.1|3509469_3509748_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_003537933.1|3510015_3511179_+|transposase	IS4-like element ISRm16 family transposase	transposase	NA	NA	NA	NA
WP_003537440.1|3511296_3512109_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010969243.1|3512254_3512755_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_014529670.1|3512772_3514446_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_003537445.1|3514461_3514779_-	DUF2849 domain-containing protein	NA	NA	NA	NA	NA
WP_010969241.1|3514789_3516247_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010969240.1|3516470_3517058_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003537451.1|3517061_3517895_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010968459.1|3519162_3520335_+|transposase	IS481-like element ISRm20 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	0	4579	86642	transposase	Lactococcus_phage(100.0%)	2	NA	NA
WP_029728431.1|597_1623_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_088194105.1|3766_4579_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	35.7	1.5e-28
>prophage 2
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	10272	11493	86642	transposase	uncultured_virus(100.0%)	1	NA	NA
WP_088194107.1|10272_11493_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.5	3.0e-41
>prophage 3
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	21103	25057	86642		Ochrobactrum_phage(66.67%)	3	NA	NA
WP_029728200.1|21103_22423_-	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	30.5	6.4e-29
WP_029728199.1|22638_23646_-	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	39.9	7.2e-49
WP_029728198.1|23839_25057_-	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	54.5	4.1e-115
>prophage 4
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	40489	41266	86642		Planktothrix_phage(100.0%)	1	NA	NA
WP_003535037.1|40489_41266_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	2.1e-32
>prophage 5
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	51895	52708	86642		Lactococcus_phage(100.0%)	1	NA	NA
WP_088194105.1|51895_52708_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	35.7	1.5e-28
>prophage 6
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	66397	67081	86642	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_017273848.1|66397_67081_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	41.1	3.0e-38
>prophage 7
NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	86642	70838	72908	86642		Mycobacterium_phage(100.0%)	1	NA	NA
WP_017273893.1|70838_72908_+	recombinase family protein	NA	R4TNI9	Mycobacterium_phage	24.3	1.8e-14
>prophage 1
NZ_CP021215	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence	144210	59216	120146	144210	transposase,protease	Planktothrix_phage(10.0%)	47	NA	NA
WP_012881294.1|59216_60341_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_012881293.1|60360_61560_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_012881292.1|61563_63927_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_012881291.1|63932_64652_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	4.4e-32
WP_012881288.1|65803_66304_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_012881287.1|66300_66504_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_012881286.1|66500_68621_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.2	2.2e-79
WP_012881285.1|68803_69478_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_012881282.1|72145_72769_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_012881280.1|73233_73722_-	tryptophan-rich sensory protein	NA	A0A1V0S976	Catovirus	29.8	3.1e-05
WP_012881279.1|73782_74007_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_012881278.1|74035_74518_-	fasciclin domain-containing protein	NA	NA	NA	NA	NA
WP_012881277.1|74679_75264_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_012881276.1|75404_75974_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_017272078.1|76023_76548_+	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_012881272.1|76998_77454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017272079.1|77757_78093_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003526630.1|78641_78953_+	type II toxin-antitoxin system HigB family toxin	NA	F5A3A2	Riemerella_phage	37.9	2.6e-13
WP_003526626.1|78970_79351_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	41.7	2.9e-19
WP_012881266.1|80456_84050_-	Ti-type conjugative transfer relaxase TraA	NA	NA	NA	NA	NA
WP_012881265.1|84283_84679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012881263.1|85141_85450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012881262.1|85446_87093_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_012881261.1|87183_88257_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_017274827.1|88372_88858_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003537131.1|89224_90262_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_012881257.1|90696_90948_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_012881254.1|92175_92940_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	41.1	4.2e-41
WP_012881253.1|92993_93305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012881252.1|93375_93639_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012881249.1|95468_95945_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_012881248.1|96089_97109_+	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA	NA
WP_167389267.1|97446_97551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_017272206.1|98061_98907_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_012881244.1|98939_100463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012881243.1|100532_102764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012881242.1|102791_103781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167389268.1|104106_105714_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_017265730.1|108229_108547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017266443.1|111797_112151_+	phasin family protein	NA	NA	NA	NA	NA
WP_012881228.1|112379_113594_+|transposase	IS701-like element ISRm31 family transposase	transposase	NA	NA	NA	NA
WP_012881227.1|113788_114061_-	hypothetical protein	NA	A0A068C9B7	Rhizobium_phage	46.4	1.5e-12
WP_017267080.1|114509_114791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012881225.1|114891_115317_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	42.2	1.5e-16
WP_017267081.1|115735_117514_-	insulinase family protein	NA	NA	NA	NA	NA
WP_012881223.1|117670_118651_-|transposase	IS5 family transposase	transposase	A0A1B0VFY5	Salmonella_phage	42.0	4.9e-58
WP_012881221.1|119156_120146_+|transposase	IS5-like element ISRm33 family transposase	transposase	Q1MVF0	Enterobacteria_phage	36.7	1.1e-46
>prophage 1
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	0	67229	166875	transposase,integrase	Ochrobactrum_phage(20.0%)	60	6749:6808	61889:63310
WP_088194124.1|2651_3005_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_088194125.1|3001_3442_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_088194127.1|3902_5300_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_080591186.1|5997_6492_-	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
6749:6808	attL	TAGCACTACAGTTGCATATTTATCTATGATCTGAATCTATGGGTCTCCATGATTCGGAGG	NA	NA	NA	NA
WP_012477246.1|6796_8011_+|transposase	IS701-like element ISRm31 family transposase	transposase	NA	NA	NA	NA
WP_017273116.1|8456_9230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164820561.1|9328_9583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164827319.1|9572_10547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012477207.1|10609_11533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012477206.1|11529_13341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012477205.1|13337_14537_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_164820507.1|14533_15376_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A191ZD01	Erwinia_phage	31.9	1.9e-26
WP_127616472.1|16035_16455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026030818.1|16553_17693_-	DUF1612 and helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012477202.1|17881_19033_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_029727887.1|19456_20695_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.2	7.4e-104
WP_029727888.1|20994_22239_-	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	27.6	3.9e-20
WP_012477199.1|22396_23389_-	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	39.4	5.5e-57
WP_012477198.1|23473_24664_-	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	57.6	1.3e-124
WP_012477360.1|25044_26010_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_017273081.1|25999_26392_+	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_012477358.1|26384_26684_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_017273083.1|26694_29130_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_017273084.1|29122_29929_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_012477354.1|29925_30129_+	entry exclusion protein TrbK	NA	NA	NA	NA	NA
WP_017273085.1|30122_31304_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_012477352.1|31325_31988_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_012477351.1|32003_32834_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_012477350.1|32837_33284_+	conjugal transfer protein TrbH	NA	NA	NA	NA	NA
WP_012477349.1|33299_34598_+	IncP-type conjugal transfer protein TrbI	NA	NA	NA	NA	NA
WP_012477348.1|34805_35105_+	transcriptional repressor TraM	NA	NA	NA	NA	NA
WP_017273089.1|35105_35804_-	autoinducer binding domain-containing protein	NA	NA	NA	NA	NA
WP_026030850.1|36123_37734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017273092.1|37723_38719_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012477341.1|38885_39692_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_012477340.1|39751_40369_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_012477339.1|40383_41550_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_086023547.1|41539_42046_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA	NA
WP_017273093.1|42102_45735_-	Ti-type conjugative transfer relaxase TraA	NA	A0A2R8FE73	Brazilian_cedratvirus	25.3	1.5e-16
WP_012477336.1|45986_46250_+	TraC family protein	NA	NA	NA	NA	NA
WP_017273095.1|46254_46470_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_012477334.1|46456_48415_+	Ti-type conjugative transfer system protein TraG	NA	NA	NA	NA	NA
WP_017273096.1|48431_48629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012477331.1|48843_49110_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_012477330.1|49124_49634_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_012477329.1|49671_49845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017273098.1|50107_50278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012477327.1|50598_50907_-	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_017273099.1|51364_51538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017273100.1|51906_53139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_127616468.1|53234_53681_-	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_146722434.1|54633_56130_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_050574253.1|57228_57417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012477342.1|57569_59099_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	1.6e-119
WP_012477343.1|59111_59849_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_017273846.1|60191_61178_+	DUF3991 and TOPRIM domain-containing protein	NA	NA	NA	NA	NA
WP_012477246.1|61936_63151_+|transposase	IS701-like element ISRm31 family transposase	transposase	NA	NA	NA	NA
WP_033052679.1|63398_66224_+	DNA methylase	NA	I6WLR1	Burkholderia_virus	42.8	5.7e-184
61889:63310	attR	TAGCACTACAGTTGCATATTTATCTATGATCTGAATCTATGGGTCTCCATGATTCGGAGGTCATGGATGGCAGGTGCATCAATCGAGACGACGCTTGAGCTTTGGGCATCATCGTTGCGCGACGTGAAGGCTCGCATGCGCGGACTGTTTACGCAGGAGCGAGTTGCAGCCTCTGCGAACCTTTTCCTGGACGGCTTGCTGGGTGACGAGCGGCGTAAGACAGGTTGGATGCGTGCTGAGGCGGCCGGTGATCCCGGCCCGTGGCGGCAACAAGCCATTCTGGGGCGCGGGCGCTGGGACGCGGACGCACTTCGCGACATCGTGCGAGAGTATGTCGTAGAAAACCTCGCCACGGATGATGCGGTCCTGGTCATCGATGAGACGGGCTTCCTCAAGCAGGGCAAGACATCGTGCGGTGTTGCACGTCAATATACAGGTTCGGCTGGCAAGATAACGAACTGCCAGATCGGTGTGTTCGCCGCCTATGTGTCCGATCGCGGCCATGCCTTTATCGATCGAGCCCTGTACTTGCCCAAGAGCTGGACTGGCGATCCGGCAAGGCTTGCAGCAGCTCATGTTCCTCAGGCTACAGCCTTCGCTACCAAGCCAGGCCTGGCTGTCGAGATGATACGGCGTGCGCTGGCAGCCAATGTGCCGTTTTCATGGGTGGCCGCAGATGCGGTCTATGGCGTCGGGGACATCGAAGGAACCCTGCGCCGAGCCTGCAAAGGCTACGTTCTTGGGGTTAAATCGGACCACCATTTCGGCTCGTGGTCGGGAAAGCCTCCGGTCGCCGGCACAGCGCAGGAGATCGCCCGTGATCTCGATCCAAGTGCATGGCAGCGTCTTTCCGCCGGTGAGGGCACCAAAGGCGCTCGGCTTCATGACTGGGCCTATTGCGAACTCGCCGACCTCGATGCCGACGAATACAACGAGACGAAATCTGGGCTTTGGACCCGTGGCCTCCTGATCCGGCGCAATATCAGCGACGGTGATCTCGCATTCTTCACCACATGGTGCCCGGCCGGGACGGACATCCAGACGCTCGTTTCCGTTGAAGGCCATCGCTGGGCGATCGAAGACAGCTTCGAGACCGCCAAGAACGAGCTCGGACTCGATCACAACGAAACCCGGTCATGGCATGGCTGGCATCGCCACGTCTCCCTCGTCATGCTCGCCTTCGCCATGATGGCGGTGATCCGATACCGCGCCAATGACGCGACGCCCCAAAAAAGACTGCGGATGCCGACCATCAGGATTTAATCCGCTGGTCTATCCAGGAAGTCCGACGCATCGCCATAAGACTCGCTCAGCGTCGCATAAGCCCCGCCTACGTCATCGCATGGTCATGCTGGAGGCGCGCCCATCAGGCGGCCGCTCGACGAGCTCACCTCAAAACTAAAATGCAACTGTAGTGCTAGG	NA	NA	NA	NA
WP_012477248.1|66648_66948_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012477249.1|66944_67229_-	type II toxin-antitoxin system ParD family antitoxin	NA	A0A0N7C055	Escherichia_phage	56.9	8.4e-11
>prophage 2
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	72489	76916	166875	integrase	Tupanvirus(50.0%)	2	69057:69070	77240:77253
69057:69070	attL	GTAGGCGATGGCAG	NA	NA	NA	NA
WP_088194130.1|72489_75330_+	insulinase family protein	NA	A0A2K9L1M6	Tupanvirus	29.5	1.8e-12
WP_017273345.1|76034_76916_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	32.2	1.2e-31
77240:77253	attR	CTGCCATCGCCTAC	NA	NA	NA	NA
>prophage 3
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	80927	82928	166875	transposase,integrase	Brevibacillus_phage(50.0%)	2	73927:73942	92653:92668
73927:73942	attL	CAGGGCGGAGCCGATA	NA	NA	NA	NA
WP_033052680.1|80927_81506_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	22.5	9.7e-06
WP_164823510.1|81790_82928_+|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	32.8	9.4e-21
92653:92668	attR	CAGGGCGGAGCCGATA	NA	NA	NA	NA
>prophage 4
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	93561	94113	166875		Burkholderia_phage(100.0%)	1	NA	NA
WP_012477317.1|93561_94113_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	39.0	1.2e-26
>prophage 5
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	97323	101209	166875		Tupanvirus(66.67%)	3	NA	NA
WP_012477269.1|97323_99180_-	glycosyltransferase	NA	M1IFE6	Paramecium_bursaria_Chlorella_virus	38.9	6.0e-73
WP_012477270.1|99176_100163_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	1.2e-51
WP_017273419.1|100162_101209_-	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	48.3	3.2e-84
>prophage 6
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	105607	113807	166875	transposase	Salmonella_phage(33.33%)	4	NA	NA
WP_012881181.1|105607_108580_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	26.7	3.5e-75
WP_012881182.1|108620_109349_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	44.7	1.4e-22
WP_012881183.1|109345_110707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012477276.1|111005_113807_-	cation-translocating P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	26.9	8.7e-68
>prophage 7
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	118878	119562	166875	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_017273848.1|118878_119562_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	41.1	3.0e-38
>prophage 8
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	123721	124534	166875		Lactococcus_phage(100.0%)	1	NA	NA
WP_088194105.1|123721_124534_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	35.7	1.5e-28
>prophage 9
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	134124	139000	166875		Catovirus(50.0%)	2	NA	NA
WP_017273961.1|134124_135636_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	26.2	5.8e-18
WP_029727950.1|135637_139000_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	26.3	3.5e-47
>prophage 10
NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	166875	147069	156895	166875		Tupanvirus(100.0%)	2	NA	NA
WP_012477304.1|147069_150408_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.3	8.4e-94
WP_026030980.1|150454_156895_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.4	1.2e-115
>prophage 1
NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1613292	626209	736074	1613292	integrase,transposase	Stx2-converting_phage(16.67%)	84	684701:684715	713844:715409
WP_014531690.1|626209_626665_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_010967426.1|627024_628497_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_013845764.1|628578_629658_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.3	2.8e-30
WP_014528554.1|629654_630455_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014531691.1|630456_631332_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014531692.1|631424_632435_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003536940.1|632472_632799_-	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010967420.1|632804_634268_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014531693.1|634273_635314_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015242446.1|635310_636246_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_014528549.1|636242_637076_-	alpha/beta fold hydrolase	NA	A0A1D8EVD1	Mycobacterium_phage	37.4	2.5e-07
WP_014531696.1|637094_637697_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_012477343.1|638007_638745_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_088194133.1|638757_640287_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_014528546.1|640767_641463_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531698.1|642596_644258_-	nodulation protein NoeB	NA	NA	NA	NA	NA
WP_014531699.1|644264_645695_-	nodulation protein NoeA	NA	NA	NA	NA	NA
WP_003534891.1|645672_645888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531700.1|646084_646636_-	nodulation acetyltransferase NodL	NA	NA	NA	NA	NA
WP_014531703.1|647962_648826_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010967642.1|648829_648982_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
WP_014531704.1|648994_649726_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_014531705.1|649737_651357_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA	NA
WP_014531707.1|652119_652755_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_026030503.1|652834_653182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531712.1|654976_655669_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_167389272.1|659125_660493_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.7	9.6e-28
WP_014531721.1|662116_663043_-	transcriptional regulator NodD2	NA	NA	NA	NA	NA
WP_017267143.1|663399_663552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086019418.1|664153_665372_+|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	53.2	3.8e-76
WP_014531728.1|667398_668412_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.9	1.5e-14
WP_014531729.1|668404_669415_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.9	2.0e-14
WP_017272051.1|669411_670365_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_017272050.1|670364_671363_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_017272049.1|673179_674604_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_014531735.1|674898_675618_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_020479503.1|675793_676423_-	6-aminohexanoate-dimer hydrolase	NA	NA	NA	NA	NA
WP_127616699.1|676502_676892_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014531738.1|677132_678416_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_014531740.1|679085_679316_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
WP_017274279.1|679333_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531743.1|681618_683025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531784.1|683099_684296_-|transposase	IS256-like element ISRm5 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	4.5e-74
684701:684715	attL	GGCACGACGGCACAC	NA	NA	NA	NA
WP_013845338.1|685193_685664_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
684701:684715	attL	GGCACGACGGCACAC	NA	NA	NA	NA
WP_014531665.1|686041_687616_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	36.1	8.3e-76
WP_011970372.1|687612_688176_+	UPF0149 family protein	NA	NA	NA	NA	NA
WP_014531746.1|688270_689263_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	5.0e-18
WP_086017848.1|689259_690303_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.1	1.8e-10
WP_014531748.1|690310_691192_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_017271922.1|691193_692135_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014531750.1|692134_693730_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_017271920.1|694472_695009_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531752.1|695015_695969_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531753.1|695980_696784_+	CoA transferase subunit A	NA	NA	NA	NA	NA
WP_033045863.1|696764_697418_+	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA	NA
WP_003537222.1|698702_699881_+	thiolase family protein	NA	NA	NA	NA	NA
WP_003537220.1|699962_700430_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_020479558.1|701285_701543_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_144005760.1|702636_702972_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	60.5	2.3e-20
WP_014531761.1|703354_704551_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
703269:703283	attR	GGCACGACGGCACAC	NA	NA	NA	NA
WP_017275604.1|704558_705440_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	31.5	2.7e-31
703269:703283	attR	GGCACGACGGCACAC	NA	NA	NA	NA
WP_127616826.1|705714_707052_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_014531764.1|706936_707848_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_017275604.1|708959_709841_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	31.5	2.7e-31
WP_014531761.1|709848_711045_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_014531768.1|711538_711913_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003537652.1|712372_713683_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_014531769.1|713711_714404_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531752.1|714410_715364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014531770.1|715482_716976_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_020479523.1|717043_717511_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_017272230.1|719164_719680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531773.1|719974_721066_-	uridylate kinase	NA	NA	NA	NA	NA
WP_014531774.1|721068_722109_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_029728238.1|722332_722620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003537756.1|723947_725177_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_049223763.1|725259_726342_+	lysine-2,3-aminomutase-like protein	NA	NA	NA	NA	NA
WP_014531779.1|727676_727973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017266853.1|728512_728692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531100.1|728678_730754_+	recombinase family protein	NA	D2KRD2	Lactobacillus_phage	22.7	1.5e-08
WP_012477217.1|732245_732593_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	57.1	1.7e-26
WP_012477218.1|732589_732964_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_003537336.1|733108_734347_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_014531784.1|734877_736074_+|transposase	IS256-like element ISRm5 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	4.5e-74
>prophage 2
NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1613292	747674	756001	1613292		uncultured_virus(33.33%)	8	NA	NA
WP_014531795.1|747674_748553_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	5.6e-21
WP_014531797.1|749144_749594_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	48.3	3.8e-18
WP_010967386.1|749963_750125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010968824.1|750679_750976_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	58.7	8.4e-22
WP_015061278.1|751052_752690_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	63.4	3.0e-177
WP_003535606.1|754877_755081_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.7	1.1e-07
WP_014989928.1|755345_755618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107592306.1|755632_756001_-	DUF4055 domain-containing protein	NA	A0A0A0RTF5	Escherichia_phage	33.9	5.0e-08
>prophage 3
NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1613292	1093559	1198610	1613292	transposase	Sinorhizobium_phage(13.04%)	83	NA	NA
WP_014531051.1|1093559_1094597_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003537129.1|1095031_1095283_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014531050.1|1095711_1096026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014531049.1|1096087_1096813_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	30.8	1.1e-11
WP_003537352.1|1096994_1098443_+	DUF1254 domain-containing protein	NA	A0A1J0FA30	Only_Syngen_Nebraska_virus	22.0	2.5e-10
WP_014531047.1|1098867_1099323_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_017265675.1|1099692_1100301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531045.1|1101220_1101913_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_086017833.1|1104087_1104847_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.9	4.2e-25
WP_013845279.1|1105056_1105506_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	47.5	7.2e-17
WP_017267115.1|1107313_1107907_-	NUDIX hydrolase	NA	A0A2H4IB87	Erwinia_phage	35.3	1.9e-09
WP_014528033.1|1108393_1108597_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.7	8.0e-08
WP_167389271.1|1109236_1109383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010970069.1|1109509_1110844_+|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
WP_014528036.1|1111242_1111764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013845271.1|1112153_1112393_-	hypothetical protein	NA	J7F8X5	Agrobacterium_phage	61.8	8.6e-17
WP_026029965.1|1112513_1112765_-	hypothetical protein	NA	A0A291AUV5	Sinorhizobium_phage	80.7	3.8e-31
WP_014531029.1|1113663_1113885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003532546.1|1114947_1115100_+	hypothetical protein	NA	A0A076GD42	Sinorhizobium_phage	60.5	1.3e-07
WP_014531028.1|1115229_1115553_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	47.5	2.8e-18
WP_003532552.1|1116158_1116725_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_014531026.1|1116721_1116892_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014531025.1|1117126_1118182_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012477343.1|1118396_1119134_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_014531024.1|1119146_1120676_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.9	2.7e-119
WP_013845267.1|1121855_1122053_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_080567554.1|1122056_1122236_+	thiazole biosynthesis family protein	NA	NA	NA	NA	NA
WP_086017831.1|1122280_1123382_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	29.0	1.7e-11
WP_013845264.1|1123770_1124889_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_017266461.1|1125041_1125383_+	thiazole synthase	NA	NA	NA	NA	NA
WP_003532569.1|1125558_1126035_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_013845262.1|1126178_1127198_+	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA	NA
WP_026029944.1|1128845_1129088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017265677.1|1130594_1132400_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	33.9	7.0e-18
WP_013845257.1|1133514_1134105_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_014528047.1|1134233_1134755_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_017267891.1|1134815_1135556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003532595.1|1135707_1136484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003532599.1|1137661_1138429_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_042708814.1|1139084_1139315_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	52.6	1.2e-07
WP_012477246.1|1139334_1140549_+|transposase	IS701-like element ISRm31 family transposase	transposase	NA	NA	NA	NA
WP_003532601.1|1140872_1141838_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
WP_013845254.1|1143054_1143384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014531003.1|1143512_1145123_-	tyrosinase family protein	NA	NA	NA	NA	NA
WP_014528052.1|1145186_1145579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013845251.1|1145606_1147556_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_014531000.1|1148921_1150124_-	cytochrome P450	NA	NA	NA	NA	NA
WP_017277577.1|1152070_1152316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014530994.1|1152316_1152940_-	hypothetical protein	NA	F1C5D5	Cronobacter_phage	51.5	1.1e-52
WP_013845247.1|1153710_1153890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013845245.1|1155007_1155265_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_013845244.1|1155343_1156286_+|transposase	IS630 family transposase	transposase	A0A2P0VP61	Tetraselmis_virus	26.8	2.7e-13
WP_014530988.1|1156534_1156831_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	57.6	3.2e-21
WP_014530987.1|1156906_1158544_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	63.1	1.9e-176
WP_080567551.1|1160557_1161034_-	thermonuclease family protein	NA	NA	NA	NA	NA
WP_017266285.1|1162461_1163637_-	C1 family peptidase	NA	NA	NA	NA	NA
WP_014530979.1|1163753_1166675_+	type 2 lantipeptide synthetase LanM family protein	NA	NA	NA	NA	NA
WP_017266283.1|1167316_1167610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017274615.1|1167675_1168296_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014530975.1|1168316_1169459_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_014530974.1|1169463_1169763_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_017266279.1|1169779_1170328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014530972.1|1170635_1171598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080590370.1|1171657_1172875_-	YcaO-like family protein	NA	NA	NA	NA	NA
WP_014530970.1|1172871_1174242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017266275.1|1174241_1175363_-	YcaO-like family protein	NA	NA	NA	NA	NA
WP_014530968.1|1175502_1175736_-	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA	NA
WP_014530968.1|1176044_1176278_-	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA	NA
WP_014530968.1|1176586_1176820_-	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA	NA
WP_014530965.1|1177882_1178659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017266261.1|1178818_1179547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_127616802.1|1180213_1180972_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	43.0	1.3e-21
WP_017266263.1|1181054_1181489_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_017273893.1|1182536_1184606_+	recombinase family protein	NA	R4TNI9	Mycobacterium_phage	24.3	1.8e-14
WP_014530957.1|1185719_1186052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088194135.1|1186174_1187785_-	tyrosinase family protein	NA	NA	NA	NA	NA
WP_014530953.1|1188972_1189191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017275891.1|1189440_1189689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014530951.1|1189981_1190401_+	helix-turn-helix transcriptional regulator	NA	A0A1V0EEW3	Caulobacter_phage	39.5	8.9e-09
WP_014530949.1|1190742_1191177_+	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	47.4	2.7e-24
WP_017272622.1|1192378_1193974_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_162145869.1|1195901_1196372_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012477324.1|1197101_1198610_+|transposase	IS21-like element ISRm9 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1686813	418270	427117	1686813		Escherichia_phage(50.0%)	9	NA	NA
WP_017272476.1|418270_419548_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.8	3.7e-74
WP_010976193.1|419551_420328_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_017272475.1|420339_421245_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	49.7	3.9e-70
WP_010976191.1|421388_422393_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	26.8	2.2e-13
WP_014527789.1|422409_423087_+	aldolase	NA	A0A077SK32	Escherichia_phage	50.2	2.6e-50
WP_015008142.1|423394_424159_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013850372.1|424203_425187_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010976186.1|425188_425965_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.2	4.9e-05
WP_010976185.1|426049_427117_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	33.0	4.5e-25
>prophage 2
NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1686813	722332	788870	1686813	protease,transposase	uncultured_virus(30.0%)	60	NA	NA
WP_014530348.1|722332_723451_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_010975886.1|723751_725272_+	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
WP_010975885.1|725333_726422_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	31.2	1.1e-23
WP_013850583.1|726508_727777_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010975883.1|727855_728731_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_004434537.1|728734_729559_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010975882.1|729685_730606_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_029727779.1|730887_732078_+	class C beta-lactamase	NA	NA	NA	NA	NA
WP_004434550.1|732164_732464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010975880.1|732665_733715_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010975879.1|733948_734980_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010975878.1|734993_735896_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_010975877.1|735960_737193_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010975876.1|737362_738265_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_004434577.1|738261_739089_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010975875.1|739085_740237_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	2.9e-25
WP_010975874.1|740382_741117_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010975873.1|741134_742103_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA	NA
WP_033045625.1|742099_743113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_013850593.1|743121_744639_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.2	2.9e-17
WP_010975870.1|744781_745744_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011970797.1|745946_746892_+|transposase	IS630-like element ISRm2011-2 family transposase	transposase	S5VXX4	Leptospira_phage	24.7	1.0e-12
WP_010975869.1|746950_747997_-	glutathione synthase	NA	NA	NA	NA	NA
WP_014527117.1|748011_749898_-	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA	NA
WP_017271655.1|749894_750752_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
WP_004434611.1|750791_751004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010975865.1|751171_751804_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_014527118.1|751898_752990_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010975863.1|753254_753701_+	DedA family protein	NA	NA	NA	NA	NA
WP_014527120.1|753747_754191_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_029728001.1|754250_756734_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.5	1.8e-101
WP_014527122.1|756959_757181_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_017271656.1|757435_757759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014527124.1|757933_758299_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014527125.1|758300_759506_+	arsenite efflux MFS transporter ArsK	NA	NA	NA	NA	NA
WP_014527126.1|759879_760263_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_013850605.1|760681_761665_-	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_004434654.1|761761_762763_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004434671.1|762860_763487_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014527128.1|763628_765665_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_010975853.1|765711_766311_+	dimethylsulfoniopropionate lyase	NA	NA	NA	NA	NA
WP_013850607.1|766543_766816_-	usg protein	NA	NA	NA	NA	NA
WP_013850608.1|767097_767412_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	58.7	1.4e-22
WP_014527129.1|767458_769087_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	60.3	9.9e-181
WP_017271657.1|769157_769904_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_013850611.1|770177_770714_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_029728002.1|770844_771396_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_013850612.1|771432_772131_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.0	1.5e-37
WP_014527131.1|772135_773398_+	HAMP domain-containing histidine kinase	NA	A0A2K9L0Z8	Tupanvirus	29.7	3.9e-07
WP_010975843.1|773680_774571_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010975842.1|774770_775394_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	35.3	3.6e-14
WP_029728004.1|775390_776368_+	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA	NA
WP_014527132.1|776364_778590_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_029728006.1|778670_780452_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033043755.1|781068_781542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017266907.1|781696_782206_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010970069.1|782511_783846_+|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
WP_010970069.1|784182_785517_+|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
WP_010970069.1|785864_787199_+|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
WP_010970069.1|787535_788870_+|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
