assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001050915.2_ASM105091v2	NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	1	1033750-1033812	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh	Orphan	CCCTCTCCCCGCATGCGGGGAGA	23	1	1	1033773-1033789	NZ_CP021219.1_2580168-2580184	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,RT	NA,NA	NA|273aa|up_9|NZ_CP021219.1_1021164_1021983_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|602aa|up_8|NZ_CP021219.1_1022000_1023806_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|340aa|up_7|NZ_CP021219.1_1023914_1024934_-	PRK00292, glk, glucokinase; Provisional	NA|127aa|up_6|NZ_CP021219.1_1024995_1025376_-	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|356aa|up_5|NZ_CP021219.1_1025496_1026564_-	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|620aa|up_4|NZ_CP021219.1_1026855_1028715_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|361aa|up_3|NZ_CP021219.1_1028895_1029978_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|378aa|up_2|NZ_CP021219.1_1029977_1031111_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|543aa|up_1|NZ_CP021219.1_1031119_1032748_+	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|320aa|up_0|NZ_CP021219.1_1032758_1033718_+	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|285aa|down_0|NZ_CP021219.1_1033954_1034809_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|115aa|down_1|NZ_CP021219.1_1034817_1035162_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|464aa|down_2|NZ_CP021219.1_1035249_1036641_-	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|270aa|down_3|NZ_CP021219.1_1036771_1037581_+	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|316aa|down_4|NZ_CP021219.1_1037779_1038726_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|388aa|down_5|NZ_CP021219.1_1038892_1040056_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|328aa|down_6|NZ_CP021219.1_1040284_1041268_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|337aa|down_7|NZ_CP021219.1_1041275_1042286_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|490aa|down_8|NZ_CP021219.1_1042344_1043814_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|429aa|down_9|NZ_CP021219.1_1043875_1045162_-	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
GCF_001050915.2_ASM105091v2	NZ_CP021219	Sinorhizobium meliloti RU11/001 chromosome, complete genome	2	2995453-2995565	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh	Orphan	ATTCCTGTGACGAGCACAGGAATGAGGG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,RT	NA|313aa|up_2|NZ_CP021219.1_2991862_2992801_-,NA	NA|632aa|up_9|NZ_CP021219.1_2983927_2985823_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|up_8|NZ_CP021219.1_2985855_2986539_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|232aa|up_7|NZ_CP021219.1_2986758_2987454_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|181aa|up_6|NZ_CP021219.1_2987565_2988108_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|464aa|up_5|NZ_CP021219.1_2988312_2989704_+	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|458aa|up_4|NZ_CP021219.1_2989936_2991310_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|132aa|up_3|NZ_CP021219.1_2991445_2991841_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|313aa|up_2|NZ_CP021219.1_2991862_2992801_-	NA	NA|578aa|up_1|NZ_CP021219.1_2992906_2994640_-	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|141aa|up_0|NZ_CP021219.1_2994641_2995064_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|640aa|down_0|NZ_CP021219.1_2995690_2997610_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|561aa|down_1|NZ_CP021219.1_2997878_2999561_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|276aa|down_2|NZ_CP021219.1_2999563_3000391_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|341aa|down_3|NZ_CP021219.1_3000401_3001424_-	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|398aa|down_4|NZ_CP021219.1_3001521_3002715_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|down_5|NZ_CP021219.1_3003086_3003908_+	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|228aa|down_6|NZ_CP021219.1_3004205_3004889_+	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|376aa|down_7|NZ_CP021219.1_3004912_3006040_-	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|215aa|down_8|NZ_CP021219.1_3006207_3006852_-	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|246aa|down_9|NZ_CP021219.1_3007008_3007746_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins
GCF_001050915.2_ASM105091v2	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1	819879-819988	1	CRISPRCasFinder	no		RT,WYL,DEDDh	Orphan	GCCGCGCGGCGGGACCGCCGCGATGA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,RT	NA|116aa|up_9|NZ_CP021217.1_802072_802420_+,NA|79aa|up_8|NZ_CP021217.1_804000_804237_-,NA|175aa|up_4|NZ_CP021217.1_809524_810049_+,NA|118aa|up_3|NZ_CP021217.1_810370_810724_+,NA|116aa|down_0|NZ_CP021217.1_820370_820718_+,NA|239aa|down_3|NZ_CP021217.1_822624_823341_+	NA|116aa|up_9|NZ_CP021217.1_802072_802420_+	NA	NA|79aa|up_8|NZ_CP021217.1_804000_804237_-	NA	NA|116aa|up_7|NZ_CP021217.1_805972_806320_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|132aa|up_6|NZ_CP021217.1_806316_806712_-	pfam01527, HTH_Tnp_1, Transposase	NA|151aa|up_5|NZ_CP021217.1_807082_807535_-	pfam11026, DUF2721, Protein of unknown function (DUF2721)	NA|175aa|up_4|NZ_CP021217.1_809524_810049_+	NA	NA|118aa|up_3|NZ_CP021217.1_810370_810724_+	NA	NA|695aa|up_2|NZ_CP021217.1_813425_815510_+	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain	NA|119aa|up_1|NZ_CP021217.1_815771_816128_-	pfam07886, BA14K, BA14K-like protein	NA|587aa|up_0|NZ_CP021217.1_817243_819004_+	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|116aa|down_0|NZ_CP021217.1_820370_820718_+	NA	NA|50aa|down_1|NZ_CP021217.1_820758_820908_-	pfam11972, HTH_13, HTH DNA binding domain	NA|330aa|down_2|NZ_CP021217.1_821386_822376_-	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|239aa|down_3|NZ_CP021217.1_822624_823341_+	NA	NA|397aa|down_4|NZ_CP021217.1_823390_824581_+	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]	NA|114aa|down_5|NZ_CP021217.1_824858_825200_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|306aa|down_6|NZ_CP021217.1_825229_826147_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|275aa|down_7|NZ_CP021217.1_826267_827092_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|683aa|down_8|NZ_CP021217.1_827597_829646_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|212aa|down_9|NZ_CP021217.1_829650_830286_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]
GCF_001050915.2_ASM105091v2	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1	794835-794952	1	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,RT	NA|158aa|up_8|NZ_CP021218.1_781068_781542_+,NA|196aa|up_2|NZ_CP021218.1_789063_789651_-,NA|133aa|down_2|NZ_CP021218.1_801568_801967_-	NA|594aa|up_9|NZ_CP021218.1_778670_780452_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|158aa|up_8|NZ_CP021218.1_781068_781542_+	NA	NA|170aa|up_7|NZ_CP021218.1_781696_782206_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|445aa|up_6|NZ_CP021218.1_782511_783846_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_5|NZ_CP021218.1_784182_785517_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_4|NZ_CP021218.1_785864_787199_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_3|NZ_CP021218.1_787535_788870_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|196aa|up_2|NZ_CP021218.1_789063_789651_-	NA	NA|414aa|up_1|NZ_CP021218.1_790014_791256_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021218.1_791335_792253_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|384aa|down_0|NZ_CP021218.1_799558_800710_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_1|NZ_CP021218.1_800697_801480_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_2|NZ_CP021218.1_801568_801967_-	NA	NA|1113aa|down_3|NZ_CP021218.1_802092_805431_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_4|NZ_CP021218.1_805615_807658_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_5|NZ_CP021218.1_807663_808827_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_6|NZ_CP021218.1_808916_809939_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|359aa|down_7|NZ_CP021218.1_810580_811657_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|486aa|down_8|NZ_CP021218.1_811821_813279_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021218.1_813275_814550_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_001050915.2_ASM105091v2	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	2	795042-795141	2	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,RT	NA|158aa|up_8|NZ_CP021218.1_781068_781542_+,NA|196aa|up_2|NZ_CP021218.1_789063_789651_-,NA|133aa|down_2|NZ_CP021218.1_801568_801967_-	NA|594aa|up_9|NZ_CP021218.1_778670_780452_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|158aa|up_8|NZ_CP021218.1_781068_781542_+	NA	NA|170aa|up_7|NZ_CP021218.1_781696_782206_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|445aa|up_6|NZ_CP021218.1_782511_783846_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_5|NZ_CP021218.1_784182_785517_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_4|NZ_CP021218.1_785864_787199_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_3|NZ_CP021218.1_787535_788870_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|196aa|up_2|NZ_CP021218.1_789063_789651_-	NA	NA|414aa|up_1|NZ_CP021218.1_790014_791256_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021218.1_791335_792253_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|384aa|down_0|NZ_CP021218.1_799558_800710_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_1|NZ_CP021218.1_800697_801480_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_2|NZ_CP021218.1_801568_801967_-	NA	NA|1113aa|down_3|NZ_CP021218.1_802092_805431_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_4|NZ_CP021218.1_805615_807658_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_5|NZ_CP021218.1_807663_808827_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_6|NZ_CP021218.1_808916_809939_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|359aa|down_7|NZ_CP021218.1_810580_811657_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|486aa|down_8|NZ_CP021218.1_811821_813279_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021218.1_813275_814550_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_001050915.2_ASM105091v2	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	3	795216-795335	3	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,RT	NA|158aa|up_8|NZ_CP021218.1_781068_781542_+,NA|196aa|up_2|NZ_CP021218.1_789063_789651_-,NA|133aa|down_2|NZ_CP021218.1_801568_801967_-	NA|594aa|up_9|NZ_CP021218.1_778670_780452_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|158aa|up_8|NZ_CP021218.1_781068_781542_+	NA	NA|170aa|up_7|NZ_CP021218.1_781696_782206_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|445aa|up_6|NZ_CP021218.1_782511_783846_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_5|NZ_CP021218.1_784182_785517_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_4|NZ_CP021218.1_785864_787199_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|445aa|up_3|NZ_CP021218.1_787535_788870_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|196aa|up_2|NZ_CP021218.1_789063_789651_-	NA	NA|414aa|up_1|NZ_CP021218.1_790014_791256_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021218.1_791335_792253_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|384aa|down_0|NZ_CP021218.1_799558_800710_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_1|NZ_CP021218.1_800697_801480_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_2|NZ_CP021218.1_801568_801967_-	NA	NA|1113aa|down_3|NZ_CP021218.1_802092_805431_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_4|NZ_CP021218.1_805615_807658_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_5|NZ_CP021218.1_807663_808827_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_6|NZ_CP021218.1_808916_809939_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|359aa|down_7|NZ_CP021218.1_810580_811657_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|486aa|down_8|NZ_CP021218.1_811821_813279_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021218.1_813275_814550_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
