The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	781216	817328	4782100	transposase,integrase,protease,bacteriocin,tRNA	Acinetobacter_phage(33.33%)	39	770849:770863	804606:804620
770849:770863	attL	CCATGCCAGCATCAA	NA	NA	NA	NA
WP_000421096.1|781216_781495_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|781737_782004_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|782000_782318_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014341481.1|783438_783783_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_001681938.1|783967_784252_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|784593_785301_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|787911_789168_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|789384_790470_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|790582_790858_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|790885_791938_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|792092_792812_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|792811_793138_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|793187_793907_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|794029_794488_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|794806_795853_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|795985_796993_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|797083_798220_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|798212_798806_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|798813_799104_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|799100_799667_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|799685_800390_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|800407_801388_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|801517_802204_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|802250_802667_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|802666_803230_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|803445_804393_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|804412_805144_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
804606:804620	attR	TTGATGCTGGCATGG	NA	NA	NA	NA
WP_000286121.1|805220_805928_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|806023_806521_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|806599_807994_-	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001062140.1|808486_809641_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|809696_809996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905074.1|809992_810157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|810290_810422_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|810430_812407_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|812634_813555_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|813655_814414_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|814689_816681_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|816869_817328_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	1089738	1155729	4782100	tail,tRNA	Salmonella_phage(41.18%)	53	NA	NA
WP_000047238.1|1089738_1092369_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|1092603_1092789_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|1094187_1094754_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|1094750_1095176_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|1095252_1096809_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|1096958_1097474_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|1097819_1099190_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_001187289.1|1099238_1100777_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|1100793_1101966_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|1102092_1102623_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|1103119_1104304_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|1104468_1105464_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|1105533_1106598_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|1108146_1109106_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|1109116_1111261_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275403.1|1111233_1111644_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
WP_000028873.1|1111640_1111886_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_000209805.1|1112157_1112589_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|1114095_1114422_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|1114583_1114934_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|1114968_1115418_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|1116116_1116518_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_000022010.1|1116866_1117394_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|1117403_1117703_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|1117885_1118044_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|1118614_1119292_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_001095643.1|1120863_1122147_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|1122161_1123610_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|1123631_1124900_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_000993092.1|1124925_1125903_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|1126205_1127720_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|1127730_1128165_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744418.1|1128176_1128986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|1129140_1129815_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|1129801_1131217_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|1131457_1132363_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|1133084_1133981_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|1134274_1135204_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|1135720_1136773_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_001682025.1|1137794_1139975_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|1140034_1140952_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|1140983_1142228_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111827.1|1142337_1145994_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|1146074_1147190_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000905027.1|1147873_1148440_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|1148582_1149755_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|1149764_1150280_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|1150334_1150637_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1150651_1150771_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|1150763_1153841_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|1153837_1154323_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|1154319_1155420_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|1155510_1155729_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 3
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	1842080	1849392	4782100	integrase,protease	Dickeya_phage(16.67%)	7	1843331:1843345	1854510:1854524
WP_001201759.1|1842080_1843199_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|1843195_1845142_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1843331:1843345	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|1845271_1845493_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1845816_1846137_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|1846167_1848444_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|1848655_1848853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|1849014_1849392_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
1854510:1854524	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 4
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	1920517	1962576	4782100	head,holin,plate,tail,terminase	Salmonella_phage(77.78%)	61	NA	NA
WP_001262313.1|1920517_1921810_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|1921854_1922103_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|1922143_1922383_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|1922388_1923270_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|1923266_1924331_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|1924408_1925089_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|1925085_1925871_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|1925876_1926173_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|1926263_1926464_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|1926752_1927157_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|1927286_1927523_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|1927488_1927863_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|1927947_1928931_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|1928933_1929683_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|1929693_1930041_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|1930037_1930562_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|1930561_1931035_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|1931038_1931611_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|1932456_1932636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|1932646_1933144_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|1933328_1933568_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|1933902_1934505_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|1934713_1935325_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|1935321_1935468_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|1935457_1936255_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|1936653_1936779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|1936914_1937364_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|1937580_1937970_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|1937956_1938238_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|1938237_1938852_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_001050879.1|1938848_1939388_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_000495544.1|1939430_1939808_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|1939904_1940132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118118.1|1940221_1940974_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|1940939_1942343_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|1942342_1943812_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|1943696_1944434_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|1944448_1945681_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|1945685_1946183_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|1946194_1947136_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|1947177_1947546_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|1947511_1947919_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|1947915_1948470_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|1948456_1948846_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|1948820_1949384_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|1949387_1950533_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|1950544_1950985_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|1950988_1951441_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_050156075.1|1951618_1953571_+	lytic transglycosylase catalytic	NA	A0A0M4REK7	Salmonella_phage	55.9	6.9e-181
WP_000346974.1|1953570_1954221_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|1954224_1954527_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|1954529_1955561_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|1955557_1955893_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|1956087_1956819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|1956818_1957247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|1957305_1958061_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|1958301_1958655_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|1958655_1959855_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|1959851_1960532_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|1960531_1962043_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|1962057_1962576_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
>prophage 5
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	2441826	2514953	4782100	transposase,integrase,plate,capsid,protease,tail,tRNA	Burkholderia_virus(39.02%)	87	2432156:2432171	2487557:2487572
2432156:2432171	attL	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_094565201.1|2441826_2442285_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|2442241_2442424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001766314.1|2442817_2443069_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|2443337_2444159_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|2444193_2444523_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|2444509_2444872_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001118268.1|2445288_2446323_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|2446497_2447886_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|2447896_2449426_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|2449952_2450897_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|2451078_2451468_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_001315282.1|2451439_2451889_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_010989166.1|2451881_2452097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|2452086_2452317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2452313_2452997_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_153781233.1|2452993_2453194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2453201_2453585_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|2453581_2453884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|2453893_2454166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2454454_2454985_-	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|2455012_2455282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|2455284_2456451_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990529.1|2456461_2458231_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000567456.1|2458234_2458399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001765083.1|2458408_2458840_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_100208317.1|2458835_2459432_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000793143.1|2459675_2460026_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104436.1|2460028_2460757_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000264664.1|2460740_2461391_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|2461387_2461714_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|2461713_2462025_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|2462024_2462570_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_170825686.1|2462620_2464162_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000090679.1|2464161_2465658_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117561.1|2465638_2466460_+|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000135517.1|2466462_2466921_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|2467135_2468251_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286905.1|2468265_2469219_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_000537457.1|2469228_2469567_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|2469568_2470015_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|2470014_2470479_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000666498.1|2470478_2470730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|2470719_2472147_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_162828734.1|2472143_2472668_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000110118.1|2472670_2472952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084228.1|2473049_2473385_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|2473329_2473467_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|2473560_2476026_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|2476025_2476910_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000478221.1|2476909_2477122_+|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|2477109_2478264_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|2478260_2478788_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|2478844_2479192_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|2479182_2480286_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000852584.1|2480278_2480857_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_000002046.1|2480859_2481885_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
WP_024131174.1|2481895_2482372_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001057643.1|2482378_2482996_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_001802272.1|2482995_2483499_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_024131173.1|2483509_2483983_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	53.0	4.3e-36
WP_001165548.1|2484054_2484627_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|2484907_2486290_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|2486351_2486687_-	GlpM family protein	NA	NA	NA	NA	NA
WP_001080045.1|2486813_2487545_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000824321.1|2488025_2489177_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
2487557:2487572	attR	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000928668.1|2489329_2491036_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001681605.1|2491146_2492448_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|2492523_2493453_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|2493449_2494853_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|2495020_2496667_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|2496866_2498042_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|2498144_2499653_+	YdgA family protein	NA	NA	NA	NA	NA
WP_000565566.1|2500358_2501360_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_000998242.1|2501433_2502474_-	oxidoreductase	NA	NA	NA	NA	NA
WP_031608772.1|2502681_2502807_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|2503105_2503321_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|2503409_2503850_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|2503926_2504508_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|2504507_2505086_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|2505078_2507100_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|2507100_2508159_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|2508162_2508783_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|2508785_2509478_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030324.1|2509477_2510113_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|2510713_2512219_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|2512324_2512930_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|2513678_2514953_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 6
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	2695991	2700403	4782100		Escherichia_phage(50.0%)	6	NA	NA
WP_000497459.1|2695991_2696231_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
WP_001529135.1|2697103_2697913_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2697985_2698363_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2698510_2699053_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|2699244_2699973_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|2699989_2700403_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 7
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	2904304	2911537	4782100		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|2904304_2905735_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|2905808_2906504_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|2906583_2906895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2907544_2908729_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|2908989_2909178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|2909188_2909401_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|2909846_2911115_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|2911117_2911537_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 8
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	3019177	3028344	4782100		Enterobacteria_phage(42.86%)	9	NA	NA
WP_000565909.1|3019177_3020257_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|3020261_3021035_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|3021050_3022025_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|3022030_3022582_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|3022582_3023461_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|3023508_3024408_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|3024407_3025493_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|3025869_3026763_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|3026940_3028344_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 9
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	3104235	3113406	4782100	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3104235_3106269_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3106509_3106968_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3107139_3107670_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3107726_3108194_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598632.1|3108240_3108960_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272853.1|3108956_3110642_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_001240415.1|3110864_3111596_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3111655_3111763_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3111743_3112475_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3112458_3113406_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 10
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	3347828	3353859	4782100		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3347828_3348770_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3350012_3350402_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3350370_3350625_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|3350641_3352564_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|3353553_3353697_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3353712_3353859_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 11
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	4012306	4019977	4782100	integrase	Enterobacteria_phage(33.33%)	7	4006783:4006796	4018186:4018199
4006783:4006796	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
WP_000468230.1|4012306_4012546_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_050156214.1|4012561_4013128_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.3	3.9e-60
WP_000493739.1|4013403_4014567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700163.1|4014556_4015615_+	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000573583.1|4015611_4016688_+	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
WP_000772672.1|4016750_4018016_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000152561.1|4018486_4019977_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
4018186:4018199	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
>prophage 12
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	4158865	4237804	4782100	portal,head,lysis,integrase,plate,capsid,tail,terminase	Salmonella_phage(83.33%)	88	4166018:4166033	4238898:4238913
WP_000954536.1|4158865_4160125_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|4160435_4161719_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|4162699_4163482_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_162009227.1|4163751_4163946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|4164338_4164560_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|4164556_4165018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|4165564_4167238_+	hypothetical protein	NA	NA	NA	NA	NA
4166018:4166033	attL	GAAGAAGACTTCTTTG	NA	NA	NA	NA
WP_010989300.1|4167318_4169604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|4169907_4170159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|4170240_4170693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000622308.1|4170872_4171361_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|4171357_4171651_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4172077_4173091_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|4173254_4174844_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_050156295.1|4174827_4176339_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	3.4e-42
WP_001210944.1|4177192_4177732_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|4177976_4179254_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|4179256_4180303_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_010989299.1|4180326_4182822_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000632616.1|4182821_4184558_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|4184602_4185670_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|4185679_4186474_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|4186499_4187195_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|4187217_4188522_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000052242.1|4188541_4190512_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000354257.1|4190813_4191560_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|4191559_4192450_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001681810.1|4192460_4192718_-	YjhX family toxin	NA	NA	NA	NA	NA
WP_000027757.1|4193824_4194850_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|4194853_4195486_-	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|4195602_4195845_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|4195877_4196387_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|4196394_4196595_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963479.1|4196558_4196900_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_001244240.1|4196967_4197201_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|4197200_4197428_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|4197424_4198009_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|4198005_4198866_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_000301193.1|4198856_4201265_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_001154438.1|4201432_4201621_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|4201632_4201866_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|4201961_4202180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4202189_4203254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4203250_4204315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|4204334_4205030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|4205078_4206122_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|4206121_4207888_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|4208030_4208864_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_000730751.1|4208880_4209945_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000059175.1|4209948_4210599_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|4210692_4211157_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|4211156_4211360_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|4211363_4211579_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|4211559_4212069_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|4212073_4212451_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_024131238.1|4212447_4212876_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001039966.1|4212971_4213403_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_000343944.1|4213395_4213842_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|4213910_4214489_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|4214485_4214845_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268327.1|4214831_4215740_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_001086816.1|4215732_4216338_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104806.1|4216334_4217954_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_000006337.1|4217960_4218368_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|4218565_4219288_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|4219501_4219720_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|4219822_4220995_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|4221004_4221520_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_001280965.1|4221574_4221877_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|4221891_4222011_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_161976233.1|4222237_4224784_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000980405.1|4224783_4225269_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001011750.1|4225265_4226366_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_001775272.1|4226433_4226652_+	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001039750.1|4226738_4227116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|4227335_4228610_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|4228741_4229011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4229110_4229437_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022217.1|4229511_4230411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|4230484_4231393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4231464_4233414_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000115421.1|4233502_4233961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4234038_4234335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4234331_4234784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4234801_4235011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4235381_4235762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020123.1|4235857_4236160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050156196.1|4236883_4237804_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
4238898:4238913	attR	GAAGAAGACTTCTTTG	NA	NA	NA	NA
>prophage 13
NZ_LT904777	Salmonella enterica subsp. enterica serovar Typhi strain ERL072973 chromosome 1	4782100	4532166	4622086	4782100	portal,head,lysis,transposase,integrase,plate,capsid,protease,tail,tRNA,terminase	Salmonella_phage(71.11%)	82	4527130:4527144	4539296:4539310
4527130:4527144	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4532166_4533813_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4533952_4534051_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4534676_4535729_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4535917_4536109_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4536124_4536694_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4536819_4537041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4537073_4537583_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4537590_4537887_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4538004_4538346_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4538413_4538647_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4538646_4538874_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4538870_4539728_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4539296:4539310	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4539724_4542139_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4542292_4542481_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4542548_4542848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4542956_4543835_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4544448_4545363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4545359_4546100_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4546134_4547172_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4547171_4548938_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4549080_4549914_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4549930_4550989_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4550992_4551643_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4551738_4552203_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4552202_4552406_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4552409_4552625_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4552605_4553118_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4553119_4553497_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4553493_4553922_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000829146.1|4554440_4554887_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4554955_4555534_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4555530_4555890_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4555876_4556785_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4556777_4557383_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_048667453.1|4557379_4558786_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	75.3	5.2e-154
WP_001174915.1|4558788_4559229_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_000805568.1|4559200_4559794_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_031625033.1|4559793_4560297_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	71.3	2.1e-57
WP_000905046.1|4560327_4560894_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|4561036_4562209_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|4562218_4562734_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|4562788_4563091_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|4563105_4563225_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|4563217_4566295_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|4566291_4566777_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|4566773_4567874_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|4567964_4568183_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|4569764_4570223_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|4570330_4570669_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|4570775_4571624_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000201804.1|4577600_4578452_-	glutamate racemase	NA	NA	NA	NA	NA
WP_000591414.1|4578396_4580241_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000186987.1|4580614_4581715_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000813838.1|4581761_4582121_-	YijD family membrane protein	NA	NA	NA	NA	NA
WP_000971958.1|4582136_4582772_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_001120789.1|4582970_4584371_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
WP_001025919.1|4584353_4585271_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_001230038.1|4585554_4586931_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001575262.1|4587048_4587825_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_000935332.1|4587832_4588837_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_000800208.1|4588925_4590077_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_001005544.1|4590445_4593097_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_001192092.1|4593298_4595032_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
WP_000274601.1|4595192_4596029_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000424865.1|4596283_4596946_+	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	1.2e-28
WP_000374033.1|4596957_4598061_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_000108110.1|4598167_4600348_-	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_000007507.1|4600512_4601403_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_001090459.1|4601681_4603163_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_000976816.1|4603107_4604214_-	alanine racemase	NA	NA	NA	NA	NA
WP_000609328.1|4604210_4605449_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.4	5.9e-101
WP_000865256.1|4605713_4607270_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001134817.1|4607405_4608530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110811.1|4609255_4611688_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_000197208.1|4611690_4612851_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_000852811.1|4613115_4613433_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_000792797.1|4615878_4616541_+	TIGR02117 family protein	NA	NA	NA	NA	NA
WP_000715284.1|4616586_4616799_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000109394.1|4617002_4619201_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_000841337.1|4619355_4620381_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_000068800.1|4620474_4621464_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_000208240.1|4621555_4622086_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
