The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	0	52271	4636142	integrase,head,capsid,portal,terminase	Salmonella_phage(79.17%)	51	39236:39252	52430:52446
WP_000673538.1|0_450_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.0	2.9e-82
WP_000059175.1|543_1194_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|1197_2262_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|2278_3112_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|3254_5021_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|5020_6064_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|6112_6808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|6827_7892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|7888_8953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|8962_9181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|9276_9510_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|9521_9710_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001690689.1|9877_12280_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.4	0.0e+00
WP_000104130.1|12270_13131_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|13127_13712_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|13708_13936_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|13935_14169_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|14236_14578_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|14541_14742_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|14749_15259_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|15291_15534_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|15650_16283_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|16286_17312_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|18418_18676_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|18686_19577_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|19576_20323_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|20624_22595_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|22614_23919_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|23941_24637_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|24662_25457_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|25466_26534_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|26578_28315_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_072073205.1|28314_30810_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|30833_31880_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|31882_33160_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_048667701.1|33404_33944_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|34797_36309_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|36292_37882_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|38045_39059_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
39236:39252	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
WP_001143724.1|39485_39779_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000622308.1|39775_40264_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000434168.1|40443_40896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|40977_41229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989300.1|41532_43818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|43898_45572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000246267.1|46118_46580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|46576_46798_+	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_162009227.1|47190_47385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000511749.1|47654_48437_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_000975154.1|49417_50701_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000954536.1|51011_52271_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
52430:52446	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 2
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	1110111	1119282	4636142	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1110111_1111059_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|1111042_1111774_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1111754_1111862_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|1111921_1112653_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001785994.1|1112875_1114561_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.9	6.9e-278
WP_000598633.1|1114557_1115277_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1115323_1115791_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1115847_1116378_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1116549_1117008_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|1117248_1119282_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	1195174	1205681	4636142		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|1195174_1196578_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|1196755_1197649_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1198025_1199111_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|1199110_1200010_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_024135283.1|1200057_1200936_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
WP_000973711.1|1200936_1201488_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|1201493_1202468_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1202483_1203257_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|1203261_1204341_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|1204367_1205681_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	1309094	1316328	4636142		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1309094_1309514_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|1309516_1310785_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|1311230_1311443_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|1311453_1311642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|1311902_1313087_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|1313737_1314049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|1314128_1314824_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|1314897_1316328_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	1520235	1524647	4636142		Escherichia_phage(50.0%)	6	NA	NA
WP_000281950.1|1520235_1520649_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|1520665_1521394_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|1521585_1522128_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|1522275_1522653_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|1522725_1523535_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_000497451.1|1524407_1524647_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 6
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	1705693	1779687	4636142	integrase,transposase,capsid,tRNA,tail,plate,protease	Burkholderia_virus(37.21%)	88	1745185:1745201	1778595:1778611
WP_000168626.1|1705693_1706968_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|1707716_1708322_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|1708426_1709932_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|1710532_1711168_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|1711167_1711860_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|1711862_1712483_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|1712486_1713545_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|1713545_1715567_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|1715559_1716138_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|1716137_1716719_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|1716795_1717236_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|1717324_1717540_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|1717838_1717964_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|1718171_1719212_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|1719285_1720287_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000753325.1|1720992_1722501_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|1722603_1723779_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|1723978_1725625_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|1725792_1727196_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|1727192_1728122_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|1728197_1729499_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|1729609_1731316_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|1731468_1732620_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_001080045.1|1733100_1733832_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|1733958_1734294_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|1734355_1735738_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|1736018_1736591_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_024131175.1|1736662_1737196_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_024131173.1|1737206_1737680_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	53.0	4.3e-36
WP_001802272.1|1737690_1738194_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|1738193_1738811_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_024131174.1|1738817_1739294_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001775322.1|1739304_1740258_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	51.8	1.2e-58
WP_000852585.1|1740260_1740839_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.3	3.2e-65
WP_001219103.1|1740831_1741935_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|1741925_1742273_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|1742329_1742857_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|1742853_1744008_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|1743995_1744208_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|1744207_1745092_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|1745091_1747557_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
1745185:1745201	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|1747650_1747788_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|1747732_1748068_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|1748165_1748447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|1748449_1748974_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|1748970_1750398_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|1750387_1750639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|1750638_1751103_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|1751102_1751549_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|1751550_1751889_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|1751898_1752852_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|1752866_1753982_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|1754196_1754655_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|1754657_1755479_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|1755459_1756956_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|1756955_1758497_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|1758547_1759093_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|1759092_1759404_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|1759403_1759730_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|1759726_1760377_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|1760360_1761089_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|1761091_1761442_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_065304567.1|1761685_1762678_-	nucleoid-associated protein	NA	A0A291AUQ0	Sinorhizobium_phage	37.3	3.0e-55
WP_001765083.1|1762673_1763105_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_000567456.1|1763114_1763279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|1763282_1765052_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|1765062_1766229_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|1766231_1766501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|1766528_1767059_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|1767347_1767620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|1767629_1767932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|1767928_1768312_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|1768319_1768520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|1768516_1769200_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|1769196_1769427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|1769416_1769632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|1769624_1770074_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|1770045_1770435_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|1770616_1771561_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|1772087_1773617_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|1773627_1775016_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|1775190_1776225_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|1776641_1777004_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|1776990_1777320_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|1777354_1778176_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|1778444_1778696_-	acid shock protein	NA	NA	NA	NA	NA
1778595:1778611	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|1779089_1779272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|1779228_1779687_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	2223920	2302121	4636142	head,transposase,tail,holin,plate,protease,terminase	Salmonella_phage(70.0%)	92	NA	NA
WP_000938184.1|2223920_2224601_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|2224808_2225267_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|2225930_2226590_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2226676_2227006_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2227002_2227284_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|2228020_2228479_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|2229610_2230822_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2230879_2231197_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|2231241_2231655_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2231828_2232491_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2232585_2233044_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|2233079_2235134_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|2235257_2235704_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|2235722_2237876_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|2237862_2238468_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2238684_2239194_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|2239548_2240601_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|2240672_2241125_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|2241310_2243071_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2243139_2243658_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|2243757_2243925_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2244178_2244742_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2244738_2246379_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|2246383_2247637_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|2247651_2249559_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|2249571_2251680_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|2251778_2252888_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2252884_2253427_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|2253592_2254603_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|2254810_2257423_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|2258439_2259141_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|2260062_2260581_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|2260595_2262107_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|2262106_2262787_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|2262783_2263983_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|2263983_2264337_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|2264577_2265333_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|2265391_2265820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|2265819_2266551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|2266745_2267081_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|2267077_2268109_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|2268111_2268414_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|2268417_2269068_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|2269067_2271020_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|2271197_2271650_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|2271653_2272094_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|2272105_2273251_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|2273254_2273818_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|2273792_2274182_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|2274168_2274723_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|2274719_2275127_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|2275092_2275461_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_000627464.1|2275502_2276444_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|2276455_2276953_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|2276957_2278190_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|2278204_2278942_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|2278826_2280296_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|2280295_2281699_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|2281664_2282417_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|2282506_2282734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|2282830_2283208_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|2283250_2283790_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|2283786_2284401_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|2284400_2284682_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|2284668_2285058_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|2285274_2285724_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|2285859_2285985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|2286383_2287181_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|2287170_2287317_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|2287313_2287925_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|2288133_2288736_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001217670.1|2289070_2289310_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|2289494_2289992_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|2290002_2290182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208074.1|2291027_2291600_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|2291603_2292077_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|2292076_2292601_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|2292597_2292945_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|2292955_2293705_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|2293707_2294691_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|2294775_2295150_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|2295115_2295352_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|2295481_2295886_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|2296174_2296375_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|2296465_2296762_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|2296767_2297553_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|2297549_2298230_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|2298307_2299372_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|2299368_2300250_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|2300255_2300495_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|2300535_2300784_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|2300828_2302121_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
>prophage 8
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	2373246	2380558	4636142	integrase,protease	Ralstonia_phage(16.67%)	7	2368115:2368129	2379294:2379308
2368115:2368129	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|2373246_2373624_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2373785_2373983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|2374194_2376471_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|2376501_2376822_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2377145_2377367_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|2377496_2379443_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2379294:2379308	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|2379439_2380558_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 9
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	2993325	3080485	4636142	plate,tRNA,tail	Salmonella_phage(40.0%)	66	NA	NA
WP_000118732.1|2993325_2994669_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|2994672_2995209_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|2995275_2995761_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|2995997_2996423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|2996394_2996796_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|2998380_2998923_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000449770.1|2999361_3002025_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|3002392_3003295_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|3003281_3004106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|3004102_3004597_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|3004612_3006496_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145232.1|3006492_3007488_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|3009082_3009814_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|3009877_3010345_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|3010341_3011064_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|3011098_3011854_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|3011925_3013293_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|3013348_3014119_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|3014196_3014997_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|3015128_3016304_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|3016408_3017323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|3017343_3018147_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|3024178_3026752_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|3026881_3027613_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|3027609_3028590_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|3028721_3029459_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|3029730_3030069_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|3030172_3030220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|3030319_3031480_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|3031440_3032349_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|3032406_3033528_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|3033537_3034608_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|3035047_3035566_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|3035558_3036779_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|3036935_3037283_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|3037323_3038091_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3038135_3038684_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3038702_3038951_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3039294_3040656_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3040821_3041613_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3041632_3042919_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|3043039_3043597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|3043678_3044269_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3044392_3045271_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3045356_3047018_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3047166_3047505_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|3047670_3047961_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3047950_3048427_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3048576_3049059_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237656.1|3049678_3060553_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
WP_000533850.1|3060616_3062026_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196138.1|3062022_3064203_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3064210_3065374_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|3065916_3066690_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|3066658_3066832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|3067093_3067312_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3067402_3068503_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3068499_3068985_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|3068981_3072059_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|3072051_3072171_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3072185_3072488_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3072542_3073058_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3073067_3074240_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|3074382_3074949_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|3075632_3076748_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|3076828_3080485_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 10
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	3397875	3441057	4636142	integrase,transposase,bacteriocin,tRNA,protease	Bacillus_virus(25.0%)	47	3387991:3388004	3446988:3447001
3387991:3388004	attL	TTCACAACGCCAGC	NA	NA	NA	NA
WP_001204111.1|3397875_3398334_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|3398523_3399603_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|3399704_3400868_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|3400889_3401936_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|3402309_3402735_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|3402760_3403339_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|3403339_3404047_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001785834.1|3404034_3404712_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|3404705_3405362_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|3405466_3405925_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|3406113_3408105_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|3408380_3409139_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|3409239_3410160_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|3410387_3412364_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|3412372_3412504_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|3412637_3412802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|3412798_3413098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|3413153_3414308_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|3414800_3416195_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856776.1|3416273_3416771_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|3416866_3417574_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|3417650_3418382_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|3418401_3419349_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|3419564_3420128_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|3420127_3420544_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|3420590_3421277_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|3421406_3422387_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|3422404_3423109_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|3423127_3423694_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|3423690_3423981_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|3423988_3424582_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|3424574_3425711_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|3425801_3426809_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|3426941_3427988_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|3428306_3428765_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|3428887_3429607_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|3429656_3429983_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|3429982_3430702_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|3430856_3431909_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|3431936_3432212_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|3432324_3433410_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|3433626_3434883_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|3437493_3438201_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|3438542_3438827_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_014341481.1|3439011_3439356_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_001141622.1|3440476_3440794_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000768134.1|3440790_3441057_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
3446988:3447001	attR	TTCACAACGCCAGC	NA	NA	NA	NA
>prophage 11
NZ_LT905088	Salmonella enterica subsp. enterica serovar Typhi strain ERL024120 chromosome 1	4636142	4380581	4472189	4636142	integrase,head,lysis,transposase,capsid,tRNA,tail,portal,plate,terminase	Salmonella_phage(66.0%)	86	4370081:4370095	4472989:4473003
4370081:4370095	attL	GCGCGCCGCCACGGC	NA	NA	NA	NA
WP_000186987.1|4380581_4381682_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000591414.1|4382055_4383900_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000201804.1|4383844_4384696_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000149789.1|4390609_4391638_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_000655746.1|4391634_4392597_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA	NA
WP_000023068.1|4392631_4393582_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	7.9e-29
WP_001775645.1|4393790_4393964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031748.1|4394540_4395725_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.5	2.6e-13
WP_001275691.1|4395954_4396338_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001287521.1|4396339_4396885_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_001085926.1|4397042_4397471_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_001096676.1|4397474_4398179_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_001207203.1|4398594_4399092_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_000028882.1|4399158_4399524_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_000263105.1|4399841_4403870_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
WP_000653965.1|4403946_4408170_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.1	5.0e-67
WP_001576436.1|4408211_4408535_+	membrane protein	NA	NA	NA	NA	NA
WP_031624270.1|4408540_4408885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000359982.1|4409338_4409554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000643282.1|4409634_4410768_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA	NA
WP_000944065.1|4410764_4411535_-	thiazole synthase	NA	NA	NA	NA	NA
WP_001166848.1|4411536_4411737_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_000999774.1|4411717_4412476_-	HesA/MoeB/ThiF family protein	NA	A0A1V0SAV8	Catovirus	28.5	7.0e-12
WP_000284626.1|4412468_4413104_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_000108425.1|4413103_4414999_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_000934311.1|4415362_4415851_-	sigma D regulator	NA	NA	NA	NA	NA
WP_000373954.1|4415943_4416717_+	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_000137619.1|4416757_4417822_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000362359.1|4417831_4418503_+	deoxyribonuclease V	NA	A0A1V0SJW5	Klosneuvirus	28.7	2.1e-20
WP_000940092.1|4418544_4419135_+	YjaG family protein	NA	NA	NA	NA	NA
WP_001044509.1|4419321_4419594_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	57.8	5.5e-20
WP_001083923.1|4419605_4420298_+	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
WP_000828129.1|4420339_4420795_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA	NA
WP_001772857.1|4421048_4422446_+	two-component system sensor histidine kinase ZraS	NA	NA	NA	NA	NA
WP_000617932.1|4422451_4423777_+	sigma-54-dependent response regulator transcription factor ZraR	NA	NA	NA	NA	NA
WP_000866776.1|4423773_4425063_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_001187524.1|4425078_4426668_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.4	8.4e-68
WP_001541181.1|4432729_4433578_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000840996.1|4433684_4434023_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_000502114.1|4434130_4434589_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000972391.1|4436170_4436389_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001011760.1|4436479_4437580_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|4437576_4438062_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|4438058_4441136_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|4441128_4441248_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|4441262_4441565_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|4441619_4442135_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|4442144_4443317_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|4443459_4444026_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000805568.1|4444867_4445461_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_000104804.1|4445460_4446975_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_001086816.1|4446971_4447577_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|4447569_4448478_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|4448464_4448824_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|4448820_4449399_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|4449467_4449914_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001039939.1|4449906_4450338_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_001080928.1|4450433_4450862_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|4450858_4451236_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001069905.1|4451237_4451750_-	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000171568.1|4451730_4451946_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|4451949_4452153_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|4452152_4452617_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|4452712_4453363_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|4453366_4454425_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216264.1|4454441_4455275_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|4455417_4457184_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|4457183_4458221_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|4458255_4458996_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|4458992_4459907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4460520_4461399_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|4461507_4461807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|4461874_4462063_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|4462216_4464631_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|4464627_4465485_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|4465481_4465709_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|4465708_4465942_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|4466009_4466351_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|4466468_4466765_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|4466772_4467282_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|4467314_4467536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|4467661_4468231_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|4468246_4468438_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|4468626_4469679_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|4470304_4470403_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|4470542_4472189_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
4472989:4473003	attR	GCGCGCCGCCACGGC	NA	NA	NA	NA
