The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	298735	307208	2864345		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|298735_299302_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|299304_300333_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|300325_301810_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|301788_303978_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|303970_304642_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|304643_304907_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|304906_305611_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|305614_306739_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|306725_307208_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	327194	374778	2864345	bacteriocin,protease	Enterococcus_phage(20.0%)	48	NA	NA
WP_001088780.1|327194_328376_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|328413_328743_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|328981_329803_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150195.1|329795_330599_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|330585_332259_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190626.1|332245_333607_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|333788_334727_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620953.1|334778_335330_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|335494_335710_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_001790177.1|335773_335905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|335950_336910_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|337386_337743_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|337831_339313_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|339318_339606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795544.1|339884_340175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571178.1|340262_340904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000668623.1|340900_341221_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|341223_343188_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001790097.1|343231_343504_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|343513_343615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|344531_345134_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|345148_345325_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|345523_346510_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|346590_346809_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|347018_347588_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|348074_349586_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|349724_351083_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_076035548.1|351099_353424_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|353642_354446_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049959.1|354747_356310_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_001795833.1|356309_356570_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340118.1|356553_358035_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|358467_359643_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154222.1|359620_360811_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600392.1|360923_361433_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001288681.1|361626_362385_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570699.1|362526_364095_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|364436_365522_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|365716_366487_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395153.1|366764_368609_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000062417.1|368618_370004_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669939.1|370024_370879_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|370875_371685_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|371701_372337_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|372353_372701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|372886_373480_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214075.1|373583_373949_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896697.1|373971_374778_+|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
>prophage 3
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	552053	566784	2864345		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|552053_552815_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|552811_553768_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|553754_554726_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|554764_554920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|555433_556405_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|556522_558628_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|558590_558989_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|559789_560656_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|560675_561176_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193752.1|561516_563022_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|563099_563201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|563291_564209_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197273.1|564832_565375_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|565725_566784_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 4
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	578756	586576	2864345		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|578756_579908_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|579891_580485_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|580835_581504_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|581505_581925_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|581928_582642_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|582740_583325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|583604_584045_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|584386_584860_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|584834_585521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|585520_586576_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 5
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	2101444	2189090	2864345	holin,protease,terminase,integrase,head,capsid,portal,tail	Staphylococcus_phage(92.31%)	112	2115311:2115328	2140242:2140259
WP_000197635.1|2101444_2102188_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|2102362_2102647_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|2102722_2104339_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|2105040_2105253_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|2105249_2105840_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_001797573.1|2106157_2106535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|2106699_2107143_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_050902364.1|2107995_2109303_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|2109463_2110375_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812010.1|2110436_2111282_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206639.1|2111653_2112877_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|2113311_2114367_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|2114388_2115405_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2115311:2115328	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000857199.1|2116523_2117561_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_001549185.1|2117751_2118465_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705246.1|2118542_2118725_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2118928_2119270_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2119275_2120208_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2120223_2120937_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_031826358.1|2120899_2121073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854072.1|2121069_2121333_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2121348_2121564_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000180411.1|2121552_2121882_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001148642.1|2121932_2122685_+	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_001001356.1|2122700_2122877_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_000549548.1|2122873_2123104_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001120199.1|2123162_2123483_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_001285960.1|2123479_2123641_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001549178.1|2123735_2123996_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_000291513.1|2124035_2124296_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001205732.1|2124304_2124568_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700561.1|2124576_2126520_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_000138475.1|2126521_2127442_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|2127522_2128140_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934753.1|2128140_2128611_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_000148333.1|2128640_2129534_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338530.1|2129540_2129759_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401977.1|2129767_2130172_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000101288.1|2130184_2130553_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131383.1|2130556_2130799_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_001549172.1|2130807_2131179_+	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_001065101.1|2131171_2131408_+	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_000700108.1|2131397_2131640_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181819.1|2131632_2132166_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_001282074.1|2132202_2132448_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2132444_2132651_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2132647_2133034_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2133030_2133180_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|2133179_2133380_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|2133407_2133824_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2134055_2134355_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|2134484_2134829_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|2134825_2136487_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|2136502_2137690_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2137673_2138411_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|2138434_2139580_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|2139599_2139884_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|2139873_2140158_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|2140141_2140504_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2140242:2140259	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114229.1|2140500_2140905_+	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000565500.1|2140901_2141306_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000260578.1|2141309_2141954_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_094969769.1|2141980_2142220_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_001096354.1|2142269_2142620_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_001549167.1|2142670_2142808_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001551779.1|2142864_2147394_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_000567394.1|2147390_2148875_+|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_000582165.1|2148890_2152676_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|2152665_2152818_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|2152864_2153152_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|2153209_2153506_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|2153655_2153832_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|2153884_2153992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|2154043_2154298_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|2154309_2155065_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|2155255_2155747_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|2156826_2157276_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|2157960_2158311_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2158363_2158624_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2158934_2159114_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001549158.1|2160071_2161826_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068542.1|2162450_2163737_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2163936_2164035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|2164277_2164454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2164717_2165098_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|2165094_2165991_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|2165991_2166672_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2166668_2167541_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|2167540_2168281_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|2168346_2168910_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|2169030_2169555_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|2169614_2170172_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|2170168_2171011_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|2171067_2172108_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|2172558_2172732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|2173304_2173706_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|2173975_2175004_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|2175123_2176503_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|2176554_2176728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|2176922_2177852_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|2177904_2178465_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|2178836_2179934_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000323167.1|2180138_2181701_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|2181711_2181819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|2181890_2182685_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|2182704_2183781_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|2183964_2185434_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|2185426_2186248_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011538.1|2186518_2187121_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|2187101_2187275_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|2187566_2187893_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|2187923_2189090_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 6
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	2249061	2350276	2864345	tRNA,transposase,protease	Staphylococcus_phage(89.29%)	98	NA	NA
WP_001549130.1|2249061_2250423_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|2250915_2251977_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|2252234_2253692_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000590809.1|2253684_2254407_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000379978.1|2254557_2255685_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|2255689_2256160_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2256318_2256918_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2256942_2257095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2257871_2258267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2258462_2259848_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2260310_2261132_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|2261294_2262407_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2262428_2263052_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2263407_2263872_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|2264050_2265175_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2265243_2265588_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|2265970_2266069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2266359_2267556_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|2267545_2270482_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|2270478_2271420_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2271540_2272503_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2272707_2273265_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2273997_2274363_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|2274504_2274927_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|2275060_2275801_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|2275793_2277017_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|2277140_2277644_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2277806_2277917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2277906_2278944_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2279001_2279925_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|2279948_2281349_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2281671_2282226_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000226886.1|2285482_2286022_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|2286820_2287756_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|2287757_2288741_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|2288982_2289126_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|2289862_2290006_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|2290070_2293064_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|2293056_2294301_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|2294316_2294835_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|2294844_2296218_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|2296240_2296933_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_050902366.1|2296929_2297691_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	99.6	2.8e-130
WP_000586140.1|2297687_2298386_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|2298859_2299426_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|2300389_2301097_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|2301221_2301944_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|2302001_2302721_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|2302841_2303561_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|2303509_2303617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|2303718_2304435_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|2304585_2305305_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|2305369_2305504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050902367.1|2305667_2307224_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	6.8e-288
WP_000072576.1|2307216_2308416_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|2309265_2313378_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_001037045.1|2313898_2314276_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|2314623_2314725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|2314847_2314943_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|2315145_2315289_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|2315892_2316276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2316286_2316463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|2316464_2316650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|2316763_2317405_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|2317622_2318174_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|2318271_2318616_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000070653.1|2319358_2320354_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|2320434_2321085_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|2321387_2321843_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|2322001_2323480_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|2323484_2324486_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|2324482_2324740_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|2324805_2325279_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|2325283_2326030_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000639100.1|2326488_2326890_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_000109906.1|2327025_2328618_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2328988_2330182_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|2330306_2331215_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|2331426_2332260_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623471.1|2334355_2334709_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200541.1|2334705_2335071_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000091445.1|2335326_2335629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096459.1|2335888_2336602_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2337041_2337677_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|2337972_2338416_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|2338402_2338846_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|2338958_2339429_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|2339627_2339852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2340127_2340982_+	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|2341276_2341672_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|2341689_2342982_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2342981_2343296_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|2343818_2345321_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|2345801_2346845_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493892.1|2346851_2347484_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_050902368.1|2347494_2348676_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.9e-226
WP_001008551.1|2348688_2349153_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|2349274_2350276_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 7
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	2353436	2366165	2864345	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|2353436_2354000_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2353996_2354950_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|2355059_2356241_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001549041.1|2356528_2358946_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|2358967_2359279_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050548.1|2359604_2366165_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 8
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	2491623	2500666	2864345	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|2491623_2492628_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|2492629_2493655_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2493677_2494817_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2494835_2495096_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|2495370_2497650_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2497852_2500126_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2500147_2500666_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	2569803	2578115	2864345	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|2569803_2571603_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|2571826_2572933_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|2573063_2573741_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|2573743_2574844_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|2574957_2576304_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_050902374.1|2576313_2577204_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.8	9.6e-29
WP_001213908.1|2577329_2578115_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 10
NZ_CP012120	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome	2864345	2638933	2721184	2864345	holin,protease,terminase,tRNA,integrase,head,capsid,portal,tail,plate	Staphylococcus_phage(85.33%)	103	2638909:2638929	2684802:2684822
2638909:2638929	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000264751.1|2638933_2640139_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|2640264_2640879_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|2640875_2641022_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|2641111_2641507_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755722.1|2641535_2641970_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000525001.1|2641987_2642449_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000429766.1|2642461_2642791_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|2642951_2643143_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|2643226_2643403_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001548903.1|2643399_2643639_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|2643685_2643901_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|2643925_2644189_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000829612.1|2644454_2644772_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|2644764_2645067_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|2645071_2645332_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985979.1|2645345_2645708_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000762552.1|2645704_2646871_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|2646896_2647454_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001801657.1|2647521_2649474_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|2649486_2649672_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2649671_2650073_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|2650072_2650330_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|2650332_2650533_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|2650547_2650790_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_001065039.1|2650804_2651053_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|2651045_2651582_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|2651618_2651825_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|2651821_2652025_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|2652017_2652254_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|2652246_2652633_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595263.1|2652629_2652782_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|2652849_2653050_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|2653337_2655785_+	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|2655893_2655992_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001548892.1|2656125_2656416_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801648.1|2656396_2657764_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_000528512.1|2657776_2658214_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160686.1|2658370_2658685_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000778933.1|2658811_2659117_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|2659106_2660798_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|2660802_2662041_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|2662024_2662798_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|2662809_2663973_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|2664041_2664320_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|2664331_2664664_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|2664660_2665062_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|2665062_2665458_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|2665492_2666134_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|2666225_2666681_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|2666738_2667089_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2667130_2667289_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003408.1|2667302_2673503_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_001190533.1|2673502_2674327_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|2674335_2675919_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|2675918_2676209_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|2676224_2678135_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|2678134_2679601_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|2679600_2679990_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|2679982_2680147_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|2680192_2680492_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|2680627_2680930_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909220.1|2680940_2682395_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000239545.1|2682784_2683723_+	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_024937002.1|2683718_2684702_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000470336.1|2684950_2685136_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
2684802:2684822	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000476873.1|2685226_2686144_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000472936.1|2686200_2687139_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|2687131_2687338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|2687352_2688267_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001789947.1|2688465_2688585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186912.1|2688863_2689409_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|2689514_2689763_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|2689870_2690824_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902119.1|2690813_2692193_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_000069282.1|2692345_2693806_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_001789943.1|2693930_2694047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|2694207_2695194_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681756.1|2695308_2696277_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|2696353_2697013_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001789945.1|2697043_2697160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001789944.1|2697276_2697468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133954.1|2697724_2698900_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165536.1|2699121_2700432_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161738.1|2700448_2701447_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|2701617_2701890_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450553.1|2702320_2702893_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|2702895_2703621_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096471.1|2703622_2704582_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|2704673_2705123_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|2705331_2705532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|2705917_2707084_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776323.1|2707109_2708174_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245895.1|2708183_2709482_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|2709488_2710733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000004947.1|2710746_2711322_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|2711311_2711899_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|2711970_2712651_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839926.1|2712987_2713305_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690027.1|2713545_2714688_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361544.1|2714692_2715895_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000049919.1|2715881_2716853_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|2716876_2719570_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|2719891_2721184_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 1
NZ_CP012121	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02, complete sequence	61539	22899	31319	61539	transposase	Staphylococcus_phage(71.43%)	9	NA	NA
WP_042856805.1|22899_23124_-	DUF4314 domain-containing protein	NA	A0A127AWR5	Bacillus_phage	52.0	5.8e-07
WP_042856804.1|23431_23677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050902402.1|24198_24378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105987.1|25024_25699_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_000282655.1|25812_26769_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_000175735.1|26810_27296_+	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_047499649.1|27759_28434_-|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.1	3.4e-127
WP_002456737.1|28620_29316_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.4	3.0e-38
WP_050902403.1|29852_31319_+	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.9	3.9e-67
