assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001183785.1_ASM118378v1	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	1	46362-46789	1,1	CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas2	RT,cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,csa3,cas14j	Type I-U,Type I-C, Type I-U?	GTCGCACCTCATATAGGTGCGTGGATTGAAAT,ATAGGTGCGTGGATTGAAAT	32,20	1	1	46526-46558	NZ_CP010110.1_66670-66702	I-C:NA	6,6	6	TypeI-U,TypeI-C,TypeI-U?	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|172aa|up_9|NZ_CP010111.1_27820_28336_-,NA|570aa|up_7|NZ_CP010111.1_30757_32467_-,NA|257aa|up_4|NZ_CP010111.1_36747_37518_-,NA|286aa|up_2|NZ_CP010111.1_41789_42647_+,NA|345aa|up_1|NZ_CP010111.1_42880_43915_+,NA|574aa|up_0|NZ_CP010111.1_44321_46043_+,NA	NA|172aa|up_9|NZ_CP010111.1_27820_28336_-	NA	NA|318aa|up_8|NZ_CP010111.1_28576_29530_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|570aa|up_7|NZ_CP010111.1_30757_32467_-	NA	NA|576aa|up_6|NZ_CP010111.1_33545_35273_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|238aa|up_5|NZ_CP010111.1_36016_36730_-	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|257aa|up_4|NZ_CP010111.1_36747_37518_-	NA	NA|936aa|up_3|NZ_CP010111.1_38195_41003_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|286aa|up_2|NZ_CP010111.1_41789_42647_+	NA	NA|345aa|up_1|NZ_CP010111.1_42880_43915_+	NA	NA|574aa|up_0|NZ_CP010111.1_44321_46043_+	NA	cas3|810aa|down_0|NZ_CP010111.1_46900_49330_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|240aa|down_1|NZ_CP010111.1_49498_50218_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|640aa|down_2|NZ_CP010111.1_50218_52138_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|287aa|down_3|NZ_CP010111.1_52140_53001_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|102aa|down_4|NZ_CP010111.1_53420_53726_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas7|65aa|down_5|NZ_CP010111.1_54051_54246_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|78aa|down_6|NZ_CP010111.1_54297_54531_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|55aa|down_7|NZ_CP010111.1_54955_55120_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|75aa|down_8|NZ_CP010111.1_55178_55403_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	NA|382aa|down_9|NZ_CP010111.1_55800_56946_+	pfam04326, AlbA_2, Putative DNA-binding domain
GCF_001183785.1_ASM118378v1	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	2	53811-53960	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3	RT,cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,csa3,cas14j	Type I-U,Type I-C, Type I-U?	AGGTGCGTGGATTGAAAT	18	0	0	NA	NA	NA	2	2	TypeI-U,TypeI-C,TypeI-U?	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|257aa|up_9|NZ_CP010111.1_36747_37518_-,NA|286aa|up_7|NZ_CP010111.1_41789_42647_+,NA|345aa|up_6|NZ_CP010111.1_42880_43915_+,NA|574aa|up_5|NZ_CP010111.1_44321_46043_+,NA|139aa|down_7|NZ_CP010111.1_58880_59297_+,NA|76aa|down_9|NZ_CP010111.1_60665_60893_+	NA|257aa|up_9|NZ_CP010111.1_36747_37518_-	NA	NA|936aa|up_8|NZ_CP010111.1_38195_41003_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|286aa|up_7|NZ_CP010111.1_41789_42647_+	NA	NA|345aa|up_6|NZ_CP010111.1_42880_43915_+	NA	NA|574aa|up_5|NZ_CP010111.1_44321_46043_+	NA	cas3|810aa|up_4|NZ_CP010111.1_46900_49330_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|240aa|up_3|NZ_CP010111.1_49498_50218_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|640aa|up_2|NZ_CP010111.1_50218_52138_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|287aa|up_1|NZ_CP010111.1_52140_53001_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|102aa|up_0|NZ_CP010111.1_53420_53726_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas7|65aa|down_0|NZ_CP010111.1_54051_54246_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|78aa|down_1|NZ_CP010111.1_54297_54531_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|55aa|down_2|NZ_CP010111.1_54955_55120_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|75aa|down_3|NZ_CP010111.1_55178_55403_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	NA|382aa|down_4|NZ_CP010111.1_55800_56946_+	pfam04326, AlbA_2, Putative DNA-binding domain	cas2|79aa|down_5|NZ_CP010111.1_57217_57454_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas7|130aa|down_6|NZ_CP010111.1_57766_58156_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	NA|139aa|down_7|NZ_CP010111.1_58880_59297_+	NA	NA|364aa|down_8|NZ_CP010111.1_59558_60650_+	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	NA|76aa|down_9|NZ_CP010111.1_60665_60893_+	NA
GCF_001183785.1_ASM118378v1	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	3	57624-57852	2,2	CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3	RT,cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,csa3,cas14j	Type I-U,Type I-C, Type I-U?	GTCGCACCTTATATGGGTGCGTGG,GTCGCACCTTATATAGGTGCGTGGATTGAAAT	24,32	0	0	NA	NA	NA:I-C	3,3	3	TypeI-U,TypeI-C,TypeI-U?	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA,NA|139aa|down_0|NZ_CP010111.1_58880_59297_+,NA|76aa|down_2|NZ_CP010111.1_60665_60893_+,NA|238aa|down_4|NZ_CP010111.1_64271_64985_+,NA|210aa|down_5|NZ_CP010111.1_65320_65950_+,NA|212aa|down_6|NZ_CP010111.1_65949_66585_+,NA|205aa|down_7|NZ_CP010111.1_66635_67250_-,NA|195aa|down_8|NZ_CP010111.1_67233_67818_-,NA|128aa|down_9|NZ_CP010111.1_67943_68327_+	cas5|240aa|up_9|NZ_CP010111.1_49498_50218_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|640aa|up_8|NZ_CP010111.1_50218_52138_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|287aa|up_7|NZ_CP010111.1_52140_53001_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|102aa|up_6|NZ_CP010111.1_53420_53726_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas7|65aa|up_5|NZ_CP010111.1_54051_54246_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|78aa|up_4|NZ_CP010111.1_54297_54531_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|55aa|up_3|NZ_CP010111.1_54955_55120_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|75aa|up_2|NZ_CP010111.1_55178_55403_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	NA|382aa|up_1|NZ_CP010111.1_55800_56946_+	pfam04326, AlbA_2, Putative DNA-binding domain	cas2|79aa|up_0|NZ_CP010111.1_57217_57454_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|139aa|down_0|NZ_CP010111.1_58880_59297_+	NA	NA|364aa|down_1|NZ_CP010111.1_59558_60650_+	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	NA|76aa|down_2|NZ_CP010111.1_60665_60893_+	NA	NA|1097aa|down_3|NZ_CP010111.1_60964_64255_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|238aa|down_4|NZ_CP010111.1_64271_64985_+	NA	NA|210aa|down_5|NZ_CP010111.1_65320_65950_+	NA	NA|212aa|down_6|NZ_CP010111.1_65949_66585_+	NA	NA|205aa|down_7|NZ_CP010111.1_66635_67250_-	NA	NA|195aa|down_8|NZ_CP010111.1_67233_67818_-	NA	NA|128aa|down_9|NZ_CP010111.1_67943_68327_+	NA
GCF_001183785.1_ASM118378v1	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	4	72214-72373	3	CRISPRCasFinder	no	cas7,cas2,c2c10_CAS-V-U3,csa3	RT,cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,csa3,cas14j	Type I-A	AAAACATAACAATAGATGTATTGAAAT	27	0	0	NA	NA	V-U3	2	2	TypeI-A	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|238aa|up_9|NZ_CP010111.1_64271_64985_+,NA|210aa|up_8|NZ_CP010111.1_65320_65950_+,NA|212aa|up_7|NZ_CP010111.1_65949_66585_+,NA|205aa|up_6|NZ_CP010111.1_66635_67250_-,NA|195aa|up_5|NZ_CP010111.1_67233_67818_-,NA|128aa|up_4|NZ_CP010111.1_67943_68327_+,NA|68aa|up_2|NZ_CP010111.1_69180_69384_-,NA|157aa|up_1|NZ_CP010111.1_69835_70306_-,NA|67aa|down_2|NZ_CP010111.1_76882_77083_+,NA|96aa|down_3|NZ_CP010111.1_77158_77446_+,NA|252aa|down_4|NZ_CP010111.1_77469_78225_+,NA|106aa|down_8|NZ_CP010111.1_80658_80976_+,NA|126aa|down_9|NZ_CP010111.1_80972_81350_+	NA|238aa|up_9|NZ_CP010111.1_64271_64985_+	NA	NA|210aa|up_8|NZ_CP010111.1_65320_65950_+	NA	NA|212aa|up_7|NZ_CP010111.1_65949_66585_+	NA	NA|205aa|up_6|NZ_CP010111.1_66635_67250_-	NA	NA|195aa|up_5|NZ_CP010111.1_67233_67818_-	NA	NA|128aa|up_4|NZ_CP010111.1_67943_68327_+	NA	NA|213aa|up_3|NZ_CP010111.1_68343_68982_+	pfam08378, NERD, Nuclease-related domain	NA|68aa|up_2|NZ_CP010111.1_69180_69384_-	NA	NA|157aa|up_1|NZ_CP010111.1_69835_70306_-	NA	c2c10_CAS-V-U3|454aa|up_0|NZ_CP010111.1_70586_71948_+	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|888aa|down_0|NZ_CP010111.1_73113_75777_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|215aa|down_1|NZ_CP010111.1_76205_76850_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|67aa|down_2|NZ_CP010111.1_76882_77083_+	NA	NA|96aa|down_3|NZ_CP010111.1_77158_77446_+	NA	NA|252aa|down_4|NZ_CP010111.1_77469_78225_+	NA	NA|146aa|down_5|NZ_CP010111.1_78258_78696_+	PRK03113, PRK03113, putative disulfide oxidoreductase; Provisional	csa3|98aa|down_6|NZ_CP010111.1_78769_79063_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|364aa|down_7|NZ_CP010111.1_79252_80344_+	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|106aa|down_8|NZ_CP010111.1_80658_80976_+	NA	NA|126aa|down_9|NZ_CP010111.1_80972_81350_+	NA
GCF_001183785.1_ASM118378v1	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	5	72669-72896	2,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas7,cas2,c2c10_CAS-V-U3,csa3	RT,cas3,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,csa3,cas14j	Type I-A	GTTAAAACAAAACAATAGATGTATTGAAAT,AAAACATAACAATAGATGTATTGAAAT,AACAATAGATGTATTGAAAT	30,27,20	0	0	NA	NA	V-U3:V-U3:NA	3,3,3	3	TypeI-A	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|238aa|up_9|NZ_CP010111.1_64271_64985_+,NA|210aa|up_8|NZ_CP010111.1_65320_65950_+,NA|212aa|up_7|NZ_CP010111.1_65949_66585_+,NA|205aa|up_6|NZ_CP010111.1_66635_67250_-,NA|195aa|up_5|NZ_CP010111.1_67233_67818_-,NA|128aa|up_4|NZ_CP010111.1_67943_68327_+,NA|68aa|up_2|NZ_CP010111.1_69180_69384_-,NA|157aa|up_1|NZ_CP010111.1_69835_70306_-,NA|67aa|down_2|NZ_CP010111.1_76882_77083_+,NA|96aa|down_3|NZ_CP010111.1_77158_77446_+,NA|252aa|down_4|NZ_CP010111.1_77469_78225_+,NA|106aa|down_8|NZ_CP010111.1_80658_80976_+,NA|126aa|down_9|NZ_CP010111.1_80972_81350_+	NA|238aa|up_9|NZ_CP010111.1_64271_64985_+	NA	NA|210aa|up_8|NZ_CP010111.1_65320_65950_+	NA	NA|212aa|up_7|NZ_CP010111.1_65949_66585_+	NA	NA|205aa|up_6|NZ_CP010111.1_66635_67250_-	NA	NA|195aa|up_5|NZ_CP010111.1_67233_67818_-	NA	NA|128aa|up_4|NZ_CP010111.1_67943_68327_+	NA	NA|213aa|up_3|NZ_CP010111.1_68343_68982_+	pfam08378, NERD, Nuclease-related domain	NA|68aa|up_2|NZ_CP010111.1_69180_69384_-	NA	NA|157aa|up_1|NZ_CP010111.1_69835_70306_-	NA	c2c10_CAS-V-U3|454aa|up_0|NZ_CP010111.1_70586_71948_+	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|888aa|down_0|NZ_CP010111.1_73113_75777_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|215aa|down_1|NZ_CP010111.1_76205_76850_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|67aa|down_2|NZ_CP010111.1_76882_77083_+	NA	NA|96aa|down_3|NZ_CP010111.1_77158_77446_+	NA	NA|252aa|down_4|NZ_CP010111.1_77469_78225_+	NA	NA|146aa|down_5|NZ_CP010111.1_78258_78696_+	PRK03113, PRK03113, putative disulfide oxidoreductase; Provisional	csa3|98aa|down_6|NZ_CP010111.1_78769_79063_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|364aa|down_7|NZ_CP010111.1_79252_80344_+	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|106aa|down_8|NZ_CP010111.1_80658_80976_+	NA	NA|126aa|down_9|NZ_CP010111.1_80972_81350_+	NA
GCF_001183785.1_ASM118378v1	NZ_CP010106	Bacillus thuringiensis serovar indiana strain HD521 chromosome, complete genome	1	620127-620202	1	CRISPRCasFinder	no	csa3	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh	Type I-A	ATCATCATCATGGAGGACACAATCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA,NA	NA|335aa|up_9|NZ_CP010106.1_608851_609856_+	pfam01032, FecCD, FecCD transport family	NA|353aa|up_8|NZ_CP010106.1_609852_610911_+	pfam01032, FecCD, FecCD transport family	NA|274aa|up_7|NZ_CP010106.1_610923_611745_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|244aa|up_6|NZ_CP010106.1_611772_612504_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|397aa|up_5|NZ_CP010106.1_612717_613908_+	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional	NA|322aa|up_4|NZ_CP010106.1_613952_614918_+	cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs	NA|141aa|up_3|NZ_CP010106.1_614977_615400_+	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|628aa|up_2|NZ_CP010106.1_615437_617321_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|298aa|up_1|NZ_CP010106.1_617324_618218_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|510aa|up_0|NZ_CP010106.1_618345_619875_-	PRK12452, PRK12452, cardiolipin synthase	NA|568aa|down_0|NZ_CP010106.1_620926_622630_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|466aa|down_1|NZ_CP010106.1_622661_624059_-	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family	NA|237aa|down_2|NZ_CP010106.1_624514_625225_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|476aa|down_3|NZ_CP010106.1_625366_626794_+	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|554aa|down_4|NZ_CP010106.1_626807_628469_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|375aa|down_5|NZ_CP010106.1_628502_629627_-	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family	NA|369aa|down_6|NZ_CP010106.1_629607_630714_-	pfam03845, Spore_permease, Spore germination protein	NA|501aa|down_7|NZ_CP010106.1_630694_632197_-	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|324aa|down_8|NZ_CP010106.1_632385_633357_+	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only]	NA|487aa|down_9|NZ_CP010106.1_633516_634977_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family
GCF_001183785.1_ASM118378v1	NZ_CP010106	Bacillus thuringiensis serovar indiana strain HD521 chromosome, complete genome	2	1066448-1066541	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh	Orphan	GGTTTAAATACGTTAAATAGCAAAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|100aa|up_4|NZ_CP010106.1_1060875_1061175_+,NA|282aa|up_3|NZ_CP010106.1_1061228_1062074_-,NA|71aa|down_0|NZ_CP010106.1_1068471_1068684_+,NA|143aa|down_8|NZ_CP010106.1_1073606_1074035_+	NA|349aa|up_9|NZ_CP010106.1_1053283_1054330_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|312aa|up_8|NZ_CP010106.1_1054344_1055280_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|474aa|up_7|NZ_CP010106.1_1055299_1056721_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|451aa|up_6|NZ_CP010106.1_1056782_1058135_-	pfam13218, DUF4026, Protein of unknown function (DUF4026)	NA|789aa|up_5|NZ_CP010106.1_1058376_1060743_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|100aa|up_4|NZ_CP010106.1_1060875_1061175_+	NA	NA|282aa|up_3|NZ_CP010106.1_1061228_1062074_-	NA	NA|134aa|up_2|NZ_CP010106.1_1062303_1062705_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|650aa|up_1|NZ_CP010106.1_1062707_1064657_+	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|191aa|up_0|NZ_CP010106.1_1064929_1065502_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|71aa|down_0|NZ_CP010106.1_1068471_1068684_+	NA	NA|102aa|down_1|NZ_CP010106.1_1068687_1068993_+	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087)	NA|118aa|down_2|NZ_CP010106.1_1069019_1069373_-	pfam14470, bPH_3, Bacterial PH domain	NA|170aa|down_3|NZ_CP010106.1_1069506_1070016_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|338aa|down_4|NZ_CP010106.1_1070210_1071224_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|43aa|down_5|NZ_CP010106.1_1071263_1071392_-	pfam14149, YhfH, YhfH-like protein	NA|245aa|down_6|NZ_CP010106.1_1071572_1072307_+	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|330aa|down_7|NZ_CP010106.1_1072316_1073306_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|143aa|down_8|NZ_CP010106.1_1073606_1074035_+	NA	NA|511aa|down_9|NZ_CP010106.1_1074196_1075729_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated
GCF_001183785.1_ASM118378v1	NZ_CP010106	Bacillus thuringiensis serovar indiana strain HD521 chromosome, complete genome	3	4714204-4714743	1	CRT	no	csa3	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh	Type I-A	TGGACCTTGAATTCCTTG	18	1	1	4714294-4714311	NZ_CP010106.1_3255209-3255226	NA	9	9	Orphan	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA,NA|108aa|down_0|NZ_CP010106.1_4716722_4717046_-,NA|61aa|down_3|NZ_CP010106.1_4717872_4718055_+,NA|62aa|down_8|NZ_CP010106.1_4723638_4723824_+	NA|262aa|up_9|NZ_CP010106.1_4706177_4706963_-	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|286aa|up_8|NZ_CP010106.1_4706976_4707834_-	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism]	NA|140aa|up_7|NZ_CP010106.1_4707870_4708290_-	pfam13027, DUF3888, Protein of unknown function (DUF3888)	NA|78aa|up_6|NZ_CP010106.1_4708383_4708617_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|155aa|up_5|NZ_CP010106.1_4708619_4709084_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|174aa|up_4|NZ_CP010106.1_4709080_4709602_-	cd03116, MobB, molybdopterin-guanine dinucleotide biosynthesis protein B	NA|430aa|up_3|NZ_CP010106.1_4709565_4710855_-	cd00887, MoeA, MoeA family	NA|162aa|up_2|NZ_CP010106.1_4710938_4711424_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|338aa|up_1|NZ_CP010106.1_4711461_4712475_-	PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional	NA|338aa|up_0|NZ_CP010106.1_4712491_4713505_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|108aa|down_0|NZ_CP010106.1_4716722_4717046_-	NA	NA|75aa|down_1|NZ_CP010106.1_4717066_4717291_-	pfam10676, gerPA, Spore germination protein gerPA/gerPF	NA|102aa|down_2|NZ_CP010106.1_4717369_4717675_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|61aa|down_3|NZ_CP010106.1_4717872_4718055_+	NA	NA|375aa|down_4|NZ_CP010106.1_4718104_4719229_-	PRK06765, PRK06765, homoserine O-acetyltransferase; Provisional	NA|664aa|down_5|NZ_CP010106.1_4719381_4721373_+	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|367aa|down_6|NZ_CP010106.1_4721390_4722491_+	pfam03845, Spore_permease, Spore germination protein	NA|362aa|down_7|NZ_CP010106.1_4722460_4723546_+	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family	NA|62aa|down_8|NZ_CP010106.1_4723638_4723824_+	NA	NA|141aa|down_9|NZ_CP010106.1_4723921_4724344_+	cd11545, NTP-PPase_YP_001813558, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3
GCF_001183785.1_ASM118378v1	NZ_CP010106	Bacillus thuringiensis serovar indiana strain HD521 chromosome, complete genome	4	4951447-4951565	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh	Orphan	GTTTCTTCCTACCGAACATACAGCTTAAACAAACGTTT	38	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|115aa|up_4|NZ_CP010106.1_4948757_4949102_-,NA|176aa|down_0|NZ_CP010106.1_4951604_4952132_-,NA|62aa|down_5|NZ_CP010106.1_4955484_4955670_-	NA|431aa|up_9|NZ_CP010106.1_4943364_4944657_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|262aa|up_8|NZ_CP010106.1_4944672_4945458_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|271aa|up_7|NZ_CP010106.1_4945696_4946509_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|222aa|up_6|NZ_CP010106.1_4946531_4947197_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_5|NZ_CP010106.1_4947189_4948215_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|115aa|up_4|NZ_CP010106.1_4948757_4949102_-	NA	NA|100aa|up_3|NZ_CP010106.1_4949254_4949554_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|115aa|up_2|NZ_CP010106.1_4949566_4949911_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|128aa|up_1|NZ_CP010106.1_4950402_4950786_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|122aa|up_0|NZ_CP010106.1_4950827_4951193_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|176aa|down_0|NZ_CP010106.1_4951604_4952132_-	NA	NA|216aa|down_1|NZ_CP010106.1_4952275_4952923_+	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily	NA|338aa|down_2|NZ_CP010106.1_4952988_4954002_-	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC	NA|398aa|down_3|NZ_CP010106.1_4954024_4955218_-	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	NA|83aa|down_4|NZ_CP010106.1_4955222_4955471_-	pfam07875, Coat_F, Coat F domain	NA|62aa|down_5|NZ_CP010106.1_4955484_4955670_-	NA	NA|183aa|down_6|NZ_CP010106.1_4956360_4956909_-	pfam13305, WHG, WHG domain	NA|241aa|down_7|NZ_CP010106.1_4956912_4957635_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|595aa|down_8|NZ_CP010106.1_4957776_4959561_-	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|391aa|down_9|NZ_CP010106.1_4959782_4960955_-	PRK07661, PRK07661, acetyl-CoA C-acetyltransferase
GCF_001183785.1_ASM118378v1	NZ_CP010106	Bacillus thuringiensis serovar indiana strain HD521 chromosome, complete genome	5	5215717-5215850	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,csa3,WYL,DinG,DEDDh,RT,cas5,cas8c,cas7,cas2,c2c10_CAS-V-U3,cas14j	NA|45aa|up_0|NZ_CP010106.1_5215394_5215529_-,NA	NA|229aa|up_9|NZ_CP010106.1_5207368_5208055_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|294aa|up_8|NZ_CP010106.1_5208072_5208954_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP010106.1_5209196_5209964_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NZ_CP010106.1_5210075_5210777_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NZ_CP010106.1_5210766_5211510_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NZ_CP010106.1_5211768_5212446_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NZ_CP010106.1_5212789_5213224_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NZ_CP010106.1_5213651_5214653_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NZ_CP010106.1_5214813_5215086_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP010106.1_5215394_5215529_-	NA	NA|235aa|down_0|NZ_CP010106.1_5216738_5217443_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP010106.1_5217442_5218285_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP010106.1_5218465_5219473_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NZ_CP010106.1_5219572_5220592_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NZ_CP010106.1_5220798_5222103_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NZ_CP010106.1_5222142_5222853_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NZ_CP010106.1_5222898_5223135_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NZ_CP010106.1_5223337_5224858_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NZ_CP010106.1_5224859_5226362_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NZ_CP010106.1_5226358_5228221_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
