The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	4908383	781837	821021	4908383	protease,transposase	Shigella_phage(33.33%)	29	NA	NA
WP_087942080.1|781837_782982_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	58.8	3.1e-88
WP_011038588.1|783477_784029_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_011038587.1|784140_785508_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	29.8	3.6e-43
WP_011038586.1|785765_786065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038585.1|786283_786739_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_011038584.1|786735_787236_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011038583.1|787261_788353_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_011038582.1|788349_789999_-	MFS transporter	NA	NA	NA	NA	NA
WP_014509029.1|790086_790848_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_012437339.1|791038_791929_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_050912026.1|791973_793953_+	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_050912027.1|794578_795298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016944445.1|795301_795925_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_087942080.1|798544_799688_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	58.8	3.1e-88
WP_050912028.1|799689_800019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012437346.1|800015_801770_+	quinoprotein dehydrogenase-associated putative ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012437347.1|801717_802437_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_011038572.1|802433_803480_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_011038571.1|803514_804621_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.5	9.2e-29
WP_011038570.1|804631_807016_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_087942922.1|807317_808116_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_019237253.1|808509_810483_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_011038567.1|811162_812095_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_003482734.1|812371_813418_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	21.2	2.7e-06
WP_011269503.1|813750_815100_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_011038565.1|815096_815582_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_050912029.1|815585_817646_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_011038563.1|817642_818761_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_138922025.1|819919_821021_+|transposase	IS3-like element IS1404 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	1.3e-43
>prophage 2
NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	4908383	1020318	1074008	4908383	protease,transposase	Leptospira_phage(11.11%)	45	NA	NA
WP_087942911.1|1020318_1021451_-|transposase	IS3-like element ISXca1 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	3.7e-49
WP_011038406.1|1021497_1021959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038405.1|1021955_1022486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144421969.1|1022857_1023837_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.2e-98
WP_162274440.1|1023827_1024394_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_050912055.1|1024433_1025540_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011038398.1|1025628_1026975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038397.1|1026971_1027556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011269533.1|1028170_1028719_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_011038396.1|1028788_1029910_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011035783.1|1030076_1031444_+|transposase	IS5-like element IS1478 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	2.8e-80
WP_011038395.1|1031469_1031973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038394.1|1032811_1034068_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_011038393.1|1034227_1034791_+	adenylate kinase	NA	A0A1B4XWI3	Tenacibaculum_phage	29.6	4.7e-13
WP_011038392.1|1035146_1036505_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_011038391.1|1036519_1037101_+|protease	ATP-dependent protease	protease	NA	NA	NA	NA
WP_011038390.1|1037242_1038127_+	membrane protein	NA	NA	NA	NA	NA
WP_040940711.1|1038511_1040593_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_019237311.1|1040741_1041401_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
WP_011038387.1|1041526_1042342_+	NAD(P)-dependent oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.0	1.4e-05
WP_043877714.1|1042974_1043922_+	YiiG family protein	NA	NA	NA	NA	NA
WP_011038385.1|1044148_1045021_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	31.9	7.3e-05
WP_011038384.1|1045093_1046320_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	23.8	2.0e-16
WP_011038381.1|1047605_1049897_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_040940714.1|1050029_1051637_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011038379.1|1051633_1052059_+	cytochrome c	NA	NA	NA	NA	NA
WP_011038378.1|1052084_1052588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038377.1|1052620_1053820_+	pyridoxal phosphate-dependent aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	24.5	6.0e-10
WP_011038376.1|1053982_1054432_+	azurin	NA	NA	NA	NA	NA
WP_011038375.1|1054501_1057267_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011038374.1|1057495_1058785_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_011038371.1|1063042_1063666_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_029216955.1|1063689_1063929_+	rubredoxin	NA	NA	NA	NA	NA
WP_011038369.1|1064026_1064908_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_040940718.1|1064948_1065398_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	27.9	8.3e-05
WP_011038367.1|1065530_1066178_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_012437476.1|1066279_1066750_-	EVE domain-containing protein	NA	NA	NA	NA	NA
WP_029217028.1|1066746_1067337_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_012437479.1|1067900_1068197_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_011038363.1|1068193_1068415_-	TIGR02449 family protein	NA	NA	NA	NA	NA
WP_040940720.1|1068650_1069193_+	YecA family protein	NA	NA	NA	NA	NA
WP_144421970.1|1070537_1071336_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_050912056.1|1071441_1072254_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011038304.1|1072267_1073080_-	S1/P1 nuclease	NA	NA	NA	NA	NA
WP_144421971.1|1073210_1074008_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	4908383	2385370	2466076	4908383	integrase,coat,transposase	Xanthomonas_phage(38.46%)	53	2384827:2384845	2423823:2423841
2384827:2384845	attL	ATTTGGAGCGGGAAACGAG	NA	NA	NA	NA
WP_019237627.1|2385370_2387305_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A0U1UNT3	Pseudomonas_phage	48.2	7.0e-101
WP_050912223.1|2388575_2389571_+	avirulence protein	NA	NA	NA	NA	NA
WP_011037262.1|2390091_2390739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011035783.1|2391297_2392665_-|transposase	IS5-like element IS1478 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	2.8e-80
WP_144421975.1|2395054_2396035_+|transposase	IS5-like element IS1646 family transposase	transposase	A0A077K814	Ralstonia_phage	61.3	7.4e-99
WP_011038243.1|2397327_2398866_+	histidine kinase	NA	NA	NA	NA	NA
WP_016848927.1|2399887_2400535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011037258.1|2403030_2405130_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_011037257.1|2405122_2406304_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_011037255.1|2407052_2408390_-	avirulence protein	NA	NA	NA	NA	NA
WP_074038421.1|2408480_2409128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075287468.1|2411378_2412980_-	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA	NA
WP_019237643.1|2413081_2419720_-	DUF3320 domain-containing protein	NA	NA	NA	NA	NA
WP_011037249.1|2420161_2421868_-	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011269748.1|2422014_2422461_-	autotransporter	NA	NA	NA	NA	NA
WP_011037248.1|2423123_2423399_+	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
WP_050912224.1|2424138_2425551_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
2423823:2423841	attR	CTCGTTTCCCGCTCCAAAT	NA	NA	NA	NA
WP_011037246.1|2425789_2427082_+	nucleotide sugar dehydrogenase	NA	M1HEP0	Acanthocystis_turfacea_Chlorella_virus	29.9	1.4e-23
WP_011037245.1|2427065_2428319_-	TIGR03862 family flavoprotein	NA	NA	NA	NA	NA
WP_014507823.1|2428330_2428762_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_011037243.1|2428822_2429188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011037242.1|2429221_2429983_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_011037241.1|2430198_2430846_+	response regulator	NA	NA	NA	NA	NA
WP_011269749.1|2431122_2431332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011037240.1|2431413_2434977_-	ribonuclease E	NA	NA	NA	NA	NA
WP_011037239.1|2435380_2436364_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_011037238.1|2436750_2437569_-	zinc transporter ZupT	NA	NA	NA	NA	NA
WP_011269750.1|2437696_2438119_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_011037236.1|2438115_2438472_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_011037235.1|2438564_2439164_+	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA	NA
WP_019237638.1|2439177_2440971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050911472.1|2441099_2441750_+	conjugal transfer protein	NA	A0A077JBM8	Xanthomonas_phage	49.5	1.0e-48
WP_080994736.1|2442213_2442549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075272161.1|2442568_2442877_-	chloride channel protein	NA	A0A1W6DXV7	Xanthomonas_phage	90.3	1.0e-46
WP_075272161.1|2443554_2443863_+	chloride channel protein	NA	A0A1W6DXV7	Xanthomonas_phage	90.3	1.0e-46
WP_011269756.1|2443882_2445205_-	hypothetical protein	NA	Q4LAU4	Stenotrophomonas_phage	56.3	5.8e-131
WP_011269757.1|2445206_2445527_-|coat	minor coat protein	coat	Q4LAU3	Stenotrophomonas_phage	44.2	3.5e-21
WP_016944907.1|2445537_2445777_-	hypothetical protein	NA	Q9XJ91	Xanthomonas_phage	94.9	1.1e-35
WP_005918131.1|2446683_2446812_-|coat	Phi-Lf prophage-derived major coat protein	coat	NA	NA	NA	NA
WP_016944909.1|2446839_2447091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040964735.1|2447094_2447391_-	single-stranded DNA-binding protein	NA	B1NI78	Stenotrophomonas_phage	66.3	2.5e-26
WP_043877756.1|2447387_2448497_-	replication protein	NA	S0F3I3	Stenotrophomonas_phage	71.9	1.0e-152
WP_043877757.1|2448489_2448672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043877758.1|2448668_2448941_-	hypothetical protein	NA	A0A1D6ZIV2	Xanthomonas_phage	85.7	8.3e-16
WP_014507805.1|2449975_2450284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011037219.1|2450450_2450735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050912226.1|2450731_2459389_-	NdvB	NA	NA	NA	NA	NA
WP_014507802.1|2459719_2461036_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_012438434.1|2461119_2461488_+	response regulator	NA	NA	NA	NA	NA
WP_050911474.1|2462153_2462462_+	XapX domain-containing protein	NA	NA	NA	NA	NA
WP_050911475.1|2462759_2463650_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_050912227.1|2463656_2465048_+	alginate export family protein	NA	NA	NA	NA	NA
WP_144421976.1|2465278_2466076_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	4908383	2880949	2891425	4908383	tRNA	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
WP_012438556.1|2880949_2882914_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	43.6	1.3e-12
WP_012438558.1|2884128_2884341_-	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	63.6	1.6e-11
WP_050912285.1|2884482_2887131_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.8	4.8e-84
WP_050912286.1|2887232_2887721_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_011036899.1|2887836_2888868_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	61.3	1.6e-112
WP_011269877.1|2889040_2889682_-	transcriptional repressor LexA	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
WP_011036897.1|2889748_2891425_-	2-polyprenylphenol 6-hydroxylase	NA	G8DDN0	Micromonas_pusilla_virus	27.7	9.3e-41
>prophage 5
NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	4908383	4072972	4079355	4908383		Enterobacteria_phage(50.0%)	6	NA	NA
WP_012439274.1|4072972_4074319_+	phosphohexose mutase	NA	A0A127AWJ1	Bacillus_phage	26.6	3.1e-31
WP_012439275.1|4074364_4075768_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.1	5.0e-48
WP_050912436.1|4075889_4076798_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	33.6	1.3e-28
WP_011035866.1|4076794_4077352_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	49.4	4.3e-43
WP_012439277.1|4077348_4078236_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.8	1.2e-95
WP_012439278.1|4078299_4079355_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	47.6	4.0e-82
