assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001186465.1_ASM118646v1	NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	1	77496-77574	1	CRISPRCasFinder	no	cas3	cas3,WYL,DinG,csa3,DEDDh	Unclear	GCCGCAGCGATGGCCAGCTGGCGCG	25	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,DinG,csa3,DEDDh	NA|190aa|up_5|NZ_CP012146.1_68113_68683_-,NA|179aa|up_3|NZ_CP012146.1_71554_72091_+,NA|104aa|down_5|NZ_CP012146.1_87449_87761_-,NA|162aa|down_6|NZ_CP012146.1_88466_88952_-,NA|469aa|down_7|NZ_CP012146.1_89941_91348_-,NA|222aa|down_8|NZ_CP012146.1_91386_92052_-,NA|74aa|down_9|NZ_CP012146.1_92163_92385_-	NA|301aa|up_9|NZ_CP012146.1_64878_65781_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|102aa|up_8|NZ_CP012146.1_66071_66377_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|226aa|up_7|NZ_CP012146.1_66373_67051_-	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|297aa|up_6|NZ_CP012146.1_67185_68076_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|190aa|up_5|NZ_CP012146.1_68113_68683_-	NA	NA|129aa|up_4|NZ_CP012146.1_68943_69330_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|179aa|up_3|NZ_CP012146.1_71554_72091_+	NA	NA|377aa|up_2|NZ_CP012146.1_72332_73463_+	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|263aa|up_1|NZ_CP012146.1_73881_74670_-	COG5255, COG5255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|863aa|up_0|NZ_CP012146.1_74680_77269_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|719aa|down_0|NZ_CP012146.1_78745_80902_+	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	NA|497aa|down_1|NZ_CP012146.1_81086_82577_-	pfam13482, RNase_H_2, RNase_H superfamily	cas3|832aa|down_2|NZ_CP012146.1_82573_85069_-	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	NA|383aa|down_3|NZ_CP012146.1_85290_86439_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|221aa|down_4|NZ_CP012146.1_86720_87383_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|104aa|down_5|NZ_CP012146.1_87449_87761_-	NA	NA|162aa|down_6|NZ_CP012146.1_88466_88952_-	NA	NA|469aa|down_7|NZ_CP012146.1_89941_91348_-	NA	NA|222aa|down_8|NZ_CP012146.1_91386_92052_-	NA	NA|74aa|down_9|NZ_CP012146.1_92163_92385_-	NA
GCF_001186465.1_ASM118646v1	NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	2	1452946-1453067	2	CRISPRCasFinder	no		cas3,WYL,DinG,csa3,DEDDh	Orphan	GCCACGCCCGCCCAAAGCACGGACTCGACCTTCG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,csa3,DEDDh	NA|794aa|up_1|NZ_CP012146.1_1448342_1450724_+,NA	NA|249aa|up_9|NZ_CP012146.1_1438695_1439442_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|1097aa|up_8|NZ_CP012146.1_1439438_1442729_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|416aa|up_7|NZ_CP012146.1_1442725_1443973_-	cd17276, RMtype1_S_Sau1132ORF3780P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to S	NA|39aa|up_6|NZ_CP012146.1_1443962_1444079_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|285aa|up_5|NZ_CP012146.1_1444241_1445096_-	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|503aa|up_4|NZ_CP012146.1_1445088_1446597_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|196aa|up_3|NZ_CP012146.1_1446612_1447200_-	cd16961, RMtype1_S_TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains	NA|87aa|up_2|NZ_CP012146.1_1447368_1447629_+	cd09989, Arginase, Arginase family	NA|794aa|up_1|NZ_CP012146.1_1448342_1450724_+	NA	NA|382aa|up_0|NZ_CP012146.1_1451509_1452654_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|614aa|down_0|NZ_CP012146.1_1454157_1455999_-	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|782aa|down_1|NZ_CP012146.1_1456216_1458562_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|477aa|down_2|NZ_CP012146.1_1458698_1460129_-	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125)	NA|889aa|down_3|NZ_CP012146.1_1460303_1462970_-	PLN03080, PLN03080, Probable beta-xylosidase; Provisional	NA|894aa|down_4|NZ_CP012146.1_1463231_1465913_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|819aa|down_5|NZ_CP012146.1_1465934_1468391_-	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|354aa|down_6|NZ_CP012146.1_1468540_1469602_-	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in  bacterial endospore germination	NA|562aa|down_7|NZ_CP012146.1_1469616_1471302_-	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|914aa|down_8|NZ_CP012146.1_1471504_1474246_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|339aa|down_9|NZ_CP012146.1_1474951_1475968_+	PRK12408, PRK12408, glucokinase; Provisional
GCF_001186465.1_ASM118646v1	NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	3	1746767-1746854	3	CRISPRCasFinder	no		cas3,WYL,DinG,csa3,DEDDh	Orphan	CCAATGACCGCCACGTTCAACCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,csa3,DEDDh	NA|82aa|up_4|NZ_CP012146.1_1742815_1743061_+,NA|107aa|up_1|NZ_CP012146.1_1745608_1745929_-,NA	NA|454aa|up_9|NZ_CP012146.1_1736256_1737618_-	cd01034, EriC_like, ClC chloride channel family	NA|425aa|up_8|NZ_CP012146.1_1737665_1738940_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase	NA|181aa|up_7|NZ_CP012146.1_1739390_1739933_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|488aa|up_6|NZ_CP012146.1_1739929_1741393_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|402aa|up_5|NZ_CP012146.1_1741544_1742750_+	COG3904, COG3904, Predicted periplasmic protein [Function unknown]	NA|82aa|up_4|NZ_CP012146.1_1742815_1743061_+	NA	NA|182aa|up_3|NZ_CP012146.1_1743173_1743719_+	pfam13211, DUF4019, Protein of unknown function (DUF4019)	NA|134aa|up_2|NZ_CP012146.1_1743744_1744146_+	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|107aa|up_1|NZ_CP012146.1_1745608_1745929_-	NA	NA|81aa|up_0|NZ_CP012146.1_1745925_1746168_-	pfam13275, S4_2, S4 domain	NA|643aa|down_0|NZ_CP012146.1_1747226_1749155_+	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|789aa|down_1|NZ_CP012146.1_1749330_1751697_+	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|241aa|down_2|NZ_CP012146.1_1751753_1752476_+	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF	NA|456aa|down_3|NZ_CP012146.1_1752568_1753936_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|316aa|down_4|NZ_CP012146.1_1754355_1755303_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|276aa|down_5|NZ_CP012146.1_1755976_1756804_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|167aa|down_6|NZ_CP012146.1_1756995_1757496_+	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|521aa|down_7|NZ_CP012146.1_1757565_1759128_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|422aa|down_8|NZ_CP012146.1_1759431_1760697_+	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	NA|611aa|down_9|NZ_CP012146.1_1761013_1762846_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_001186465.1_ASM118646v1	NZ_CP012146	Xanthomonas campestris pv. campestris strain ICMP 4013 chromosome, complete genome	4	2602126-2602213	4	CRISPRCasFinder	no		cas3,WYL,DinG,csa3,DEDDh	Orphan	TGCCCGGCCACCATCGCGGGACAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,csa3,DEDDh	NA|111aa|up_8|NZ_CP012146.1_2595225_2595558_-,NA	NA|409aa|up_9|NZ_CP012146.1_2593921_2595148_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|111aa|up_8|NZ_CP012146.1_2595225_2595558_-	NA	NA|104aa|up_7|NZ_CP012146.1_2595572_2595884_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|215aa|up_6|NZ_CP012146.1_2595950_2596595_-	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|315aa|up_5|NZ_CP012146.1_2596837_2597782_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|134aa|up_4|NZ_CP012146.1_2598235_2598637_+	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|136aa|up_3|NZ_CP012146.1_2598640_2599048_+	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|222aa|up_2|NZ_CP012146.1_2599071_2599737_+	PRK12634, flgD, flagellar basal body rod modification protein; Reviewed	NA|408aa|up_1|NZ_CP012146.1_2599768_2600992_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|252aa|up_0|NZ_CP012146.1_2601135_2601891_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|down_0|NZ_CP012146.1_2602845_2603631_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|231aa|down_1|NZ_CP012146.1_2603669_2604362_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|373aa|down_2|NZ_CP012146.1_2604372_2605491_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|396aa|down_3|NZ_CP012146.1_2605492_2606680_+	PRK12711, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|625aa|down_4|NZ_CP012146.1_2606691_2608566_+	PRK12714, flgK, flagellar hook-associated protein FlgK; Provisional	NA|402aa|down_5|NZ_CP012146.1_2608565_2609771_+	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|401aa|down_6|NZ_CP012146.1_2610089_2611292_+	PRK08869, PRK08869, polar flagellin E	NA|443aa|down_7|NZ_CP012146.1_2611512_2612841_+	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus	NA|138aa|down_8|NZ_CP012146.1_2612988_2613402_+	PRK05685, fliS, flagellar export chaperone FliS	NA|98aa|down_9|NZ_CP012146.1_2613410_2613704_+	cd17431, MFS_GLUT_Class1, Class 1 Glucose transporters (GLUTs) of the Major Facilitator Superfamily
