The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009762	Staphylococcus schleiferi strain 2142-05 chromosome, complete genome	2419762	1033085	1056672	2419762		Staphylococcus_phage(90.0%)	26	NA	NA
WP_050330613.1|1033085_1033403_-	DUF4870 domain-containing protein	NA	A0A2H4JDX0	uncultured_Caudovirales_phage	46.5	9.6e-16
WP_050330614.1|1033696_1035091_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	52.3	1.4e-130
WP_050330615.1|1035087_1036077_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	45.7	6.0e-80
WP_050332158.1|1036052_1036304_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	69.9	6.0e-29
WP_050330617.1|1036361_1036832_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	47.8	8.9e-34
WP_050330618.1|1036812_1037583_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	62.7	1.8e-84
WP_050330619.1|1037713_1039297_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	75.4	1.2e-239
WP_050330620.1|1039844_1041044_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	80.8	3.1e-179
WP_050332160.1|1041133_1042045_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	67.9	2.1e-87
WP_050330621.1|1042632_1043469_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	65.3	1.6e-105
WP_050330622.1|1043608_1043965_-	CrcB family protein	NA	NA	NA	NA	NA
WP_050330623.1|1043961_1044327_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	59.3	2.2e-32
WP_050330624.1|1044363_1044666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050330625.1|1044821_1045532_+	transaldolase	NA	M1PR54	Cyanophage	37.0	5.0e-20
WP_050330626.1|1045779_1046229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050330627.1|1046231_1046660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082165720.1|1046662_1047151_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.8	3.1e-21
WP_016425399.1|1047355_1047577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050330628.1|1047733_1048597_+	glucosaminidase domain-containing protein	NA	A0A1W6JQU5	Staphylococcus_phage	44.4	9.3e-37
WP_128382892.1|1048918_1049806_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050330630.1|1050031_1051591_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	60.3	3.4e-13
WP_050330631.1|1052130_1053177_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	58.1	8.7e-114
WP_050330632.1|1053181_1053811_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	57.1	1.8e-61
WP_050330633.1|1053825_1055007_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	65.4	1.7e-150
WP_050330634.1|1055025_1055484_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	66.0	3.5e-51
WP_050330635.1|1055688_1056672_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	66.9	9.0e-121
>prophage 2
NZ_CP009762	Staphylococcus schleiferi strain 2142-05 chromosome, complete genome	2419762	1060491	1067878	2419762	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_050330640.1|1060491_1061052_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	61.1	7.8e-61
WP_050330641.1|1061048_1062002_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	78.5	6.4e-63
WP_050330642.1|1062146_1063328_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	69.0	8.3e-153
WP_050330643.1|1063703_1066115_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.8	0.0e+00
WP_050330644.1|1066133_1066445_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	64.1	1.1e-32
WP_050330645.1|1066621_1067878_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	69.5	3.5e-32
>prophage 3
NZ_CP009762	Staphylococcus schleiferi strain 2142-05 chromosome, complete genome	2419762	1182227	1193561	2419762	tRNA	uncultured_Mediterranean_phage(57.14%)	8	NA	NA
WP_016425273.1|1182227_1183226_+	Holliday junction branch migration DNA helicase RuvB	NA	E3T4M7	Cafeteria_roenbergensis_virus	27.1	2.6e-06
WP_050330734.1|1183243_1184269_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_050330735.1|1184286_1185426_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.5	1.2e-87
WP_016425270.1|1185442_1185706_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	45.7	1.8e-07
WP_050330736.1|1185844_1188124_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	31.6	6.1e-27
WP_050331958.1|1188232_1190515_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	2.4e-68
WP_050330737.1|1190528_1191047_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	48.0	1.2e-26
WP_050332168.1|1191371_1193561_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	36.5	7.7e-11
>prophage 4
NZ_CP009762	Staphylococcus schleiferi strain 2142-05 chromosome, complete genome	2419762	1523610	1581269	2419762	tRNA,protease,transposase	Staphylococcus_phage(20.0%)	54	NA	NA
WP_050331141.1|1523610_1525158_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_050331143.1|1525257_1525560_-	thiamine-binding protein	NA	NA	NA	NA	NA
WP_050331144.1|1525771_1526638_-	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA	NA
WP_050331145.1|1526638_1528399_-	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA	NA
WP_050331147.1|1528548_1529343_-	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA	NA
WP_050331149.1|1529672_1531835_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	52.4	1.7e-196
WP_050331151.1|1531818_1532202_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	60.2	4.0e-32
WP_050331152.1|1532400_1532619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050331154.1|1532740_1534300_-	ribonuclease Y	NA	NA	NA	NA	NA
WP_037559108.1|1534591_1535635_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.2	3.8e-125
WP_050331156.1|1535800_1536949_-	CinA family nicotinamide mononucleotide deamidase-related protein	NA	NA	NA	NA	NA
WP_050331158.1|1537207_1537795_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_050331159.1|1537835_1538231_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_050331161.1|1538251_1539097_-	DUF3388 domain-containing protein	NA	NA	NA	NA	NA
WP_050331163.1|1539151_1539856_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_050331165.1|1539852_1541142_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.2	1.2e-16
WP_050331166.1|1541143_1542409_-	insulinase family protein	NA	NA	NA	NA	NA
WP_050331168.1|1542445_1543162_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_050331170.1|1543165_1545529_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	49.3	2.4e-87
WP_016424930.1|1545665_1547339_-	ribonuclease J	NA	NA	NA	NA	NA
WP_050331174.1|1547709_1549809_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_016424928.1|1549959_1550229_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_016424927.1|1550331_1551303_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.6	4.1e-09
WP_050331175.1|1551318_1552236_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_050331176.1|1552316_1552661_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_050331177.1|1553022_1553658_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_050331179.1|1553668_1554418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050332194.1|1554433_1555255_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.8	5.7e-28
WP_050331181.1|1555430_1556660_-	radical SAM protein	NA	NA	NA	NA	NA
WP_050331183.1|1556649_1557090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050331184.1|1557103_1557661_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_082165735.1|1557954_1558194_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	41.3	1.3e-12
WP_050331186.1|1558334_1558517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050331974.1|1558662_1558887_-	hypothetical protein	NA	A0A1Q1PVY9	Staphylococcus_phage	48.3	1.9e-05
WP_050331187.1|1558971_1559166_-|transposase	IS3 family transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	66.7	1.5e-16
WP_050331189.1|1559158_1559341_-|transposase	transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	58.6	1.1e-13
WP_050331191.1|1559948_1562051_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.8	3.2e-22
WP_050332195.1|1562067_1562373_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_016424922.1|1562369_1562657_-	YlxR family protein	NA	NA	NA	NA	NA
WP_050332196.1|1562669_1563815_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_050331194.1|1563833_1564301_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_050331195.1|1564424_1568732_-	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	36.1	1.2e-20
WP_050331197.1|1568941_1570648_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_162489923.1|1570673_1571960_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_050331199.1|1571959_1573090_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_050332197.1|1573109_1573892_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_050331202.1|1573906_1574668_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	38.2	3.7e-21
WP_016424913.1|1574998_1575553_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_016424912.1|1575571_1576294_-	UMP kinase	NA	NA	NA	NA	NA
WP_050332198.1|1576444_1577323_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_016424910.1|1577546_1578344_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_050331206.1|1578508_1579282_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_050332199.1|1579301_1580711_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IEP8	Erwinia_phage	24.4	9.9e-28
WP_050331209.1|1580726_1581269_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 5
NZ_CP009762	Staphylococcus schleiferi strain 2142-05 chromosome, complete genome	2419762	1758981	1767401	2419762		Synechococcus_phage(33.33%)	9	NA	NA
WP_050331375.1|1758981_1759548_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
WP_050331376.1|1759544_1760579_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.5	7.7e-62
WP_050331377.1|1760582_1762004_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.6	9.3e-50
WP_050331378.1|1761982_1764172_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.5	4.0e-137
WP_050331381.1|1764164_1764836_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_016424734.1|1764837_1765098_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_050331382.1|1765100_1765802_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.1	3.3e-48
WP_050331383.1|1765798_1766932_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_050331384.1|1766918_1767401_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	1.0e-21
>prophage 6
NZ_CP009762	Staphylococcus schleiferi strain 2142-05 chromosome, complete genome	2419762	2015914	2025624	2419762		uncultured_Caudovirales_phage(33.33%)	7	NA	NA
WP_050331610.1|2015914_2018020_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	87.0	0.0e+00
WP_050331611.1|2017982_2018381_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	63.6	1.8e-43
WP_050331612.1|2019004_2019892_+	DMT family transporter	NA	NA	NA	NA	NA
WP_050331613.1|2019907_2020408_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.7	4.1e-53
WP_050331614.1|2020815_2022321_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.4	1.6e-68
WP_050331615.1|2023002_2024505_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	33.8	5.3e-64
WP_050331616.1|2024694_2025624_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	25.5	5.9e-13
