The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012195	Campylobacter ureolyticus RIGS 9880 chromosome, complete genome	1641887	1225359	1271608	1641887	tail,terminase,integrase,capsid,plate	Haemophilus_phage(30.3%)	65	1221988:1222006	1281467:1281485
1221988:1222006	attL	GAAATTTAAAAATATAAAA	NA	NA	NA	NA
WP_069435740.1|1225359_1225941_-	hypothetical protein	NA	M5AAF4	Nitratiruptor_phage	37.7	1.6e-32
WP_050335389.1|1225933_1226290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335391.1|1226448_1226796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335393.1|1226792_1227473_-	hypothetical protein	NA	A0A218M4J2	Erwinia_phage	34.9	6.5e-09
WP_050335395.1|1227484_1228216_-|tail	phage tail protein	tail	M4SNM4	Cyanophage	53.3	2.2e-18
WP_050335396.1|1228203_1228851_-	DUF2612 domain-containing protein	NA	Q7Y5S3	Haemophilus_phage	45.8	2.6e-31
WP_050335397.1|1228850_1229969_-|plate	baseplate J/gp47 family protein	plate	Q7Y5S4	Haemophilus_phage	37.6	3.5e-60
WP_050335399.1|1229955_1230294_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	43.6	1.3e-18
WP_050335401.1|1230305_1230917_-|plate	baseplate protein	plate	D0UIH7	Aggregatibacter_phage	41.2	1.8e-39
WP_050335403.1|1230913_1231744_-	hypothetical protein	NA	Q7Y5S8	Haemophilus_phage	49.3	2.0e-73
WP_050335405.1|1231736_1232078_-	hypothetical protein	NA	D0UII0	Aggregatibacter_phage	31.0	2.3e-07
WP_050335406.1|1232078_1232792_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.3	1.5e-19
WP_158349614.1|1234594_1234741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335409.1|1234770_1235172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335410.1|1235171_1235606_-	DUF3277 family protein	NA	M4SNA1	Psychrobacter_phage	27.4	3.9e-07
WP_050335412.1|1235616_1237122_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	36.6	1.7e-81
WP_050335414.1|1237118_1237550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335416.1|1237536_1237854_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	36.9	8.7e-09
WP_050335417.1|1237840_1238281_-	hypothetical protein	NA	H9C199	Pectobacterium_phage	37.5	4.3e-14
WP_050335419.1|1238277_1238646_-	DUF4054 domain-containing protein	NA	NA	NA	NA	NA
WP_050335421.1|1238655_1239600_-	DUF2184 domain-containing protein	NA	NA	NA	NA	NA
WP_050335422.1|1239602_1240049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335423.1|1240048_1241134_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	39.5	6.0e-25
WP_050335424.1|1241120_1241945_-|capsid	minor capsid protein	capsid	A0A2I7RVG9	Vibrio_phage	26.6	1.4e-13
WP_050335426.1|1241919_1243167_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	33.1	2.4e-54
WP_082162621.1|1243221_1244670_-|terminase	phage terminase large subunit	terminase	Q7Y5U7	Haemophilus_phage	63.9	1.3e-176
WP_050335427.1|1244623_1245172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335428.1|1245158_1245617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335429.1|1245623_1245983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335431.1|1245975_1246188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335432.1|1246189_1246825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335434.1|1246817_1247885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335435.1|1248002_1248218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050335436.1|1248198_1248438_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_050335437.1|1248534_1249275_+	helix-turn-helix transcriptional regulator	NA	M1PG82	Streptococcus_phage	31.2	1.1e-17
WP_050335439.1|1249306_1250377_-	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	A0A1S5SAB0	Streptococcus_phage	43.7	6.3e-67
WP_050335441.1|1250810_1251017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335443.1|1251136_1251364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335445.1|1251366_1251906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335446.1|1251956_1252178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144417466.1|1252267_1252723_+	hypothetical protein	NA	A0A2R3ZY68	Campylobacter_phage	42.6	3.9e-26
WP_158349616.1|1252726_1252903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335449.1|1252920_1253124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335451.1|1253282_1254092_+	hypothetical protein	NA	F5A3D6	Riemerella_phage	41.2	1.3e-40
WP_050335452.1|1254093_1254327_+	helix-turn-helix transcriptional regulator	NA	X2KXC5	Campylobacter_phage	52.8	1.1e-13
WP_050335454.1|1254761_1254947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158349619.1|1254943_1255087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158349620.1|1255091_1255268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335457.1|1255260_1255659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335460.1|1255643_1256483_+	hypothetical protein	NA	A0A2I7RZ22	Vibrio_phage	40.6	1.5e-28
WP_050335461.1|1256486_1257284_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A0F7L8T5	uncultured_marine_virus	33.6	1.4e-31
WP_050335463.1|1257316_1257751_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	X2KLV2	Campylobacter_phage	57.6	2.7e-37
WP_050335465.1|1257896_1258127_+	transcriptional regulator	NA	X2KQ78	Campylobacter_phage	58.0	1.8e-11
WP_050335467.1|1258123_1258360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144417475.1|1258882_1259575_+	Rha family transcriptional regulator	NA	X2KM03	Campylobacter_phage	48.5	3.2e-24
WP_050335471.1|1259677_1260193_+	single-stranded DNA-binding protein	NA	I6NRL7	Burkholderia_virus	44.8	1.6e-15
WP_050335472.1|1260203_1260410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335474.1|1260416_1261565_-|integrase	tyrosine-type recombinase/integrase	integrase	X2KQ07	Campylobacter_phage	29.2	7.8e-15
WP_050335475.1|1261834_1262269_-	effector binding domain-containing protein	NA	NA	NA	NA	NA
WP_050335477.1|1262320_1264396_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.5	9.6e-64
WP_016646698.1|1264408_1264879_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_016646697.1|1264956_1265331_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_050335479.1|1265454_1266600_-	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
WP_050335480.1|1266613_1267012_-	DoxX family protein	NA	D2X5Z2	uncultured_marine_phage	33.1	5.4e-08
WP_050335482.1|1267099_1271608_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.9	1.3e-68
1281467:1281485	attR	TTTTATATTTTTAAATTTC	NA	NA	NA	NA
>prophage 2
NZ_CP012195	Campylobacter ureolyticus RIGS 9880 chromosome, complete genome	1641887	1481407	1490581	1641887	tRNA	Salmonella_phage(16.67%)	9	NA	NA
WP_050335764.1|1481407_1481974_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	50.7	3.6e-37
WP_050335768.1|1482126_1483323_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	46.2	2.6e-77
WP_050335769.1|1483705_1483909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050335771.1|1484235_1484844_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_050335773.1|1484892_1486602_-	ATP-binding protein	NA	A0A0R6PCP6	Moraxella_phage	30.0	7.0e-20
WP_050335774.1|1486639_1487479_-	deoxyribonuclease IV	NA	L7RDB2	Acanthamoeba_polyphaga_moumouvirus	32.8	1.4e-32
WP_050335776.1|1487475_1487940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026320363.1|1488245_1488761_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.8	1.2e-12
WP_050335780.1|1488757_1490581_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.9	4.7e-115
