assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001240865.2_Ty3_193	NZ_LT904878	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, chromosome: 1	1	824815-824915	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|470aa|up_9|NZ_LT904878.1_810893_812303_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_LT904878.1_812864_813317_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_LT904878.1_813344_814847_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_LT904878.1_814871_817550_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_LT904878.1_817770_818172_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_LT904878.1_818171_819116_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_LT904878.1_819266_819536_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_LT904878.1_819777_821913_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_LT904878.1_822022_822907_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_LT904878.1_823012_823093_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_LT904878.1_825128_826373_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_LT904878.1_826463_827471_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_LT904878.1_827648_828545_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_LT904878.1_828535_829531_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_LT904878.1_829747_830272_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_LT904878.1_830265_830769_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_LT904878.1_830755_831073_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_LT904878.1_831110_831554_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_LT904878.1_831533_832052_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_LT904878.1_832182_832818_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_001240865.2_Ty3_193	NZ_LT904878	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, chromosome: 1	2	1200011-1200431	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_LT904878.1_1187036_1188749_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_LT904878.1_1188824_1189559_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_LT904878.1_1189646_1190600_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|512aa|up_6|NZ_LT904878.1_1194038_1195574_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_LT904878.1_1195590_1196193_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|NZ_LT904878.1_1196209_1197274_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_LT904878.1_1197283_1198009_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_LT904878.1_1198008_1198713_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_LT904878.1_1198712_1199630_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_LT904878.1_1199632_1199926_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_LT904878.1_1200445_1201492_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LT904878.1_1201742_1202651_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_LT904878.1_1202660_1204100_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LT904878.1_1204086_1204692_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_LT904878.1_1204709_1205066_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LT904878.1_1205256_1205568_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LT904878.1_1205586_1206297_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LT904878.1_1206296_1206776_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LT904878.1_1206772_1207822_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LT904878.1_1207802_1208564_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001240865.2_Ty3_193	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	1	81456-81613	1	PILER-CR	no		csa3	Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG,c2c9_V-U4	NA|259aa|up_9|NZ_LT904879.1_72550_73327_+,NA|41aa|up_8|NZ_LT904879.1_73391_73514_+,NA|114aa|up_7|NZ_LT904879.1_73515_73857_+,NA|120aa|up_6|NZ_LT904879.1_73861_74221_+,NA|235aa|up_5|NZ_LT904879.1_74448_75153_+,NA|166aa|down_0|NZ_LT904879.1_81802_82300_-,NA|68aa|down_1|NZ_LT904879.1_82314_82518_-,NA|59aa|down_2|NZ_LT904879.1_85869_86046_-,NA|386aa|down_4|NZ_LT904879.1_88000_89158_-,NA|274aa|down_6|NZ_LT904879.1_90356_91178_-,NA|67aa|down_8|NZ_LT904879.1_92164_92365_-	NA|259aa|up_9|NZ_LT904879.1_72550_73327_+	NA	NA|41aa|up_8|NZ_LT904879.1_73391_73514_+	NA	NA|114aa|up_7|NZ_LT904879.1_73515_73857_+	NA	NA|120aa|up_6|NZ_LT904879.1_73861_74221_+	NA	NA|235aa|up_5|NZ_LT904879.1_74448_75153_+	NA	NA|795aa|up_4|NZ_LT904879.1_75691_78076_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|203aa|up_3|NZ_LT904879.1_78325_78934_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NZ_LT904879.1_78955_79192_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_LT904879.1_79347_79944_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_LT904879.1_80335_81217_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|166aa|down_0|NZ_LT904879.1_81802_82300_-	NA	NA|68aa|down_1|NZ_LT904879.1_82314_82518_-	NA	NA|59aa|down_2|NZ_LT904879.1_85869_86046_-	NA	NA|585aa|down_3|NZ_LT904879.1_86060_87815_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_4|NZ_LT904879.1_88000_89158_-	NA	NA|275aa|down_5|NZ_LT904879.1_89517_90342_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_6|NZ_LT904879.1_90356_91178_-	NA	NA|236aa|down_7|NZ_LT904879.1_91460_92168_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_8|NZ_LT904879.1_92164_92365_-	NA	NA|359aa|down_9|NZ_LT904879.1_92382_93459_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein
