assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	1	332005-332802	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|398aa|up_9|NZ_CP009243.1_321698_322892_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP009243.1_322927_324610_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP009243.1_324626_326822_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP009243.1_326935_328069_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP009243.1_328065_328686_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP009243.1_328782_329364_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP009243.1_329293_330019_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP009243.1_330108_331029_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP009243.1_331068_331497_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_0|NZ_CP009243.1_331520_331778_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|900aa|down_0|NZ_CP009243.1_334876_337576_-	pfam00934, PE, PE family	NA|835aa|down_1|NZ_CP009243.1_337825_340330_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_CP009243.1_340620_342231_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_CP009243.1_342254_343163_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_CP009243.1_343386_345282_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_CP009243.1_345278_346895_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_CP009243.1_346891_350884_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_CP009243.1_350880_351189_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_CP009243.1_351191_352733_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_CP009243.1_352781_353075_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	2	693268-693344	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP009243.1_679161_679569_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP009243.1_679628_680315_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP009243.1_680468_683102_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP009243.1_683124_685512_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP009243.1_685649_686372_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP009243.1_686368_687166_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP009243.1_687167_688055_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP009243.1_688060_689275_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP009243.1_689271_690303_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP009243.1_690299_691745_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP009243.1_694479_696030_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP009243.1_696081_696474_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP009243.1_696470_696728_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP009243.1_696910_698146_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP009243.1_698396_698810_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP009243.1_698806_699043_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP009243.1_699146_699653_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP009243.1_699766_700237_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP009243.1_700280_701042_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP009243.1_701098_701410_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	3	928756-929667	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649|929623-929649	NZ_CP009243.1_835326-835352|NZ_CP009243.1_331977-331951|NZ_CP009243.1_334991-334965|NZ_CP009243.1_337937-337911|NZ_CP009243.1_841577-841603|NZ_CP009243.1_842855-842881|NZ_CP009243.1_928489-928515|NZ_CP009243.1_2396473-2396447|NZ_CP009243.1_333213-333187|NZ_CP009243.1_335942-335916|NZ_CP009243.1_336281-336255|NZ_CP009243.1_339056-339030|NZ_CP009243.1_676368-676342|NZ_CP009243.1_838698-838724|NZ_CP009243.1_839796-839822|NZ_CP009243.1_928390-928416|NZ_CP009243.1_1216509-1216535|NZ_CP009243.1_1653689-1653663|NZ_CP009243.1_1842901-1842875|NZ_CP009243.1_2044378-2044352|NZ_CP009243.1_3787883-3787909|NZ_CP009243.1_3918157-3918183|NZ_CP009243.1_3918313-3918339	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP009243.1_933785_934337_-,NA|81aa|down_8|NZ_CP009243.1_939812_940055_+	NA|685aa|up_9|NZ_CP009243.1_916391_918446_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP009243.1_918611_919781_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP009243.1_919868_920885_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP009243.1_921046_921688_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP009243.1_921768_922824_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP009243.1_922875_923268_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP009243.1_923325_923748_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP009243.1_923709_924000_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP009243.1_924104_925010_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP009243.1_925028_925844_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP009243.1_930044_932693_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP009243.1_933160_933805_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP009243.1_933785_934337_-	NA	NA|241aa|down_3|NZ_CP009243.1_934417_935140_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP009243.1_935210_936239_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_5|NZ_CP009243.1_936927_937710_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP009243.1_937796_938609_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP009243.1_938676_939537_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP009243.1_939812_940055_+	NA	NA|431aa|down_9|NZ_CP009243.1_940331_941624_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	4	930604-930733	1	PILER-CR	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CCGCCGGCTCCGCCGGTGGCGCCGC	25	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP009243.1_933785_934337_-,NA|81aa|down_7|NZ_CP009243.1_939812_940055_+	NA|390aa|up_9|NZ_CP009243.1_918611_919781_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NZ_CP009243.1_919868_920885_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NZ_CP009243.1_921046_921688_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NZ_CP009243.1_921768_922824_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NZ_CP009243.1_922875_923268_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NZ_CP009243.1_923325_923748_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_3|NZ_CP009243.1_923709_924000_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_2|NZ_CP009243.1_924104_925010_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP009243.1_925028_925844_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|911aa|up_0|NZ_CP009243.1_927085_929818_+	pfam00934, PE, PE family	NA|215aa|down_0|NZ_CP009243.1_933160_933805_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP009243.1_933785_934337_-	NA	NA|241aa|down_2|NZ_CP009243.1_934417_935140_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP009243.1_935210_936239_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_4|NZ_CP009243.1_936927_937710_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP009243.1_937796_938609_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP009243.1_938676_939537_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP009243.1_939812_940055_+	NA	NA|431aa|down_8|NZ_CP009243.1_940331_941624_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP009243.1_941607_942612_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	5	1214584-1215440	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	81	1214967-1214988|1214967-1214988|1215012-1215027|1215150-1215171|1215150-1215171|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285|1215267-1215285	NZ_CP009243.1_2917780-2917759|NZ_CP009243.1_2917846-2917825|NZ_CP009243.1_2071568-2071553|NZ_CP009243.1_839160-839181|NZ_CP009243.1_1220404-1220425|NZ_CP009243.1_335378-335360|NZ_CP009243.1_676032-676014|NZ_CP009243.1_841409-841427|NZ_CP009243.1_1220377-1220395|NZ_CP009243.1_1220449-1220467|NZ_CP009243.1_1628410-1628392|NZ_CP009243.1_1631236-1631218|NZ_CP009243.1_1634094-1634076|NZ_CP009243.1_1634856-1634838|NZ_CP009243.1_1974207-1974189|NZ_CP009243.1_2044552-2044534|NZ_CP009243.1_2045098-2045080|NZ_CP009243.1_2758688-2758670|NZ_CP009243.1_2762208-2762190|NZ_CP009243.1_3910418-3910436|NZ_CP009243.1_150230-150248|NZ_CP009243.1_333369-333351|NZ_CP009243.1_336485-336467|NZ_CP009243.1_336938-336920|NZ_CP009243.1_336989-336971|NZ_CP009243.1_336998-336980|NZ_CP009243.1_339269-339251|NZ_CP009243.1_339389-339371|NZ_CP009243.1_339656-339638|NZ_CP009243.1_339685-339703|NZ_CP009243.1_339779-339761|NZ_CP009243.1_364355-364337|NZ_CP009243.1_444570-444552|NZ_CP009243.1_547914-547896|NZ_CP009243.1_625223-625241|NZ_CP009243.1_625445-625463|NZ_CP009243.1_675198-675180|NZ_CP009243.1_842357-842375|NZ_CP009243.1_1093115-1093133|NZ_CP009243.1_1093763-1093781|NZ_CP009243.1_1097834-1097816|NZ_CP009243.1_1215639-1215657|NZ_CP009243.1_1216146-1216164|NZ_CP009243.1_1216398-1216416|NZ_CP009243.1_1216416-1216434|NZ_CP009243.1_1220797-1220815|NZ_CP009243.1_1488617-1488599|NZ_CP009243.1_1616362-1616344|NZ_CP009243.1_1616815-1616797|NZ_CP009243.1_1633959-1633941|NZ_CP009243.1_1633968-1633950|NZ_CP009243.1_1634181-1634163|NZ_CP009243.1_1634232-1634214|NZ_CP009243.1_1842478-1842460|NZ_CP009243.1_1843006-1842988|NZ_CP009243.1_1973481-1973463|NZ_CP009243.1_1984440-1984458|NZ_CP009243.1_2071766-2071748|NZ_CP009243.1_2279944-2279926|NZ_CP009243.1_2331194-2331176|NZ_CP009243.1_2392403-2392421|NZ_CP009243.1_2396386-2396368|NZ_CP009243.1_2539069-2539051|NZ_CP009243.1_2651346-2651364|NZ_CP009243.1_2752004-2751986|NZ_CP009243.1_2752586-2752568|NZ_CP009243.1_3001056-3001074|NZ_CP009243.1_3001155-3001173|NZ_CP009243.1_3691985-3692003|NZ_CP009243.1_3723135-3723117|NZ_CP009243.1_3723759-3723741|NZ_CP009243.1_3724002-3723984|NZ_CP009243.1_3724134-3724116|NZ_CP009243.1_3726039-3726021|NZ_CP009243.1_3786464-3786482|NZ_CP009243.1_3786647-3786665|NZ_CP009243.1_3907851-3907869|NZ_CP009243.1_3909590-3909608|NZ_CP009243.1_3910244-3910262|NZ_CP009243.1_3918535-3918553|NZ_CP009243.1_4008008-4007990	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP009243.1_1210016_1210283_+,NA|61aa|down_3|NZ_CP009243.1_1217984_1218167_+	NA|465aa|up_9|NZ_CP009243.1_1204350_1205745_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP009243.1_1205946_1206669_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP009243.1_1206700_1207867_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP009243.1_1207937_1208432_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP009243.1_1208617_1209052_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP009243.1_1209153_1210020_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP009243.1_1210016_1210283_+	NA	NA|674aa|up_2|NZ_CP009243.1_1210269_1212291_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP009243.1_1212389_1213118_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP009243.1_1213228_1214017_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP009243.1_1216799_1217120_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP009243.1_1217272_1217707_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP009243.1_1217808_1217973_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP009243.1_1217984_1218167_+	NA	NA|152aa|down_4|NZ_CP009243.1_1218358_1218814_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|851aa|down_5|NZ_CP009243.1_1219228_1221781_+	pfam00934, PE, PE family	NA|313aa|down_6|NZ_CP009243.1_1221998_1222937_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NZ_CP009243.1_1223324_1224605_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NZ_CP009243.1_1224709_1225537_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NZ_CP009243.1_1225747_1227049_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	6	2071238-2071492	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2071319-2071336|2071319-2071336|2071409-2071426	NZ_CP009243.1_402337-402320|NZ_CP009243.1_608585-608568|NZ_CP009243.1_3397356-3397339	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP009243.1_2070597_2070861_-,NA	NA|165aa|up_9|NZ_CP009243.1_2056947_2057442_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP009243.1_2057789_2058467_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP009243.1_2058825_2061651_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP009243.1_2061877_2062738_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP009243.1_2062778_2063645_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP009243.1_2063649_2065536_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP009243.1_2065551_2067585_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP009243.1_2067704_2069930_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP009243.1_2070205_2070601_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP009243.1_2070597_2070861_-	NA	NA|350aa|down_0|NZ_CP009243.1_2072628_2073678_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP009243.1_2073677_2075045_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP009243.1_2075218_2076655_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NZ_CP009243.1_2078170_2079121_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NZ_CP009243.1_2079135_2079552_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NZ_CP009243.1_2079829_2080252_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NZ_CP009243.1_2080300_2080603_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NZ_CP009243.1_2080599_2080914_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NZ_CP009243.1_2080913_2082647_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NZ_CP009243.1_2082646_2083282_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	7	2152969-2153094	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP009243.1_2142944_2143352_-,NA|127aa|down_5|NZ_CP009243.1_2160703_2161084_-	NA|216aa|up_9|NZ_CP009243.1_2136258_2136906_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP009243.1_2136912_2139135_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP009243.1_2139172_2139616_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP009243.1_2139729_2140323_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP009243.1_2140405_2141011_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP009243.1_2141110_2142115_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP009243.1_2142214_2142967_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP009243.1_2142944_2143352_-	NA	NA|767aa|up_1|NZ_CP009243.1_2143486_2145787_+	PLN02892, PLN02892, isocitrate lyase	NA|1836aa|up_0|NZ_CP009243.1_2145956_2151464_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP009243.1_2155214_2155679_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP009243.1_2155776_2156640_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP009243.1_2156677_2157949_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP009243.1_2158220_2159336_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP009243.1_2159326_2160667_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP009243.1_2160703_2161084_-	NA	NA|621aa|down_6|NZ_CP009243.1_2161240_2163103_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP009243.1_2163110_2163590_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP009243.1_2163826_2164600_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP009243.1_2164603_2165371_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	8	3065411-3066838	2,4,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	18,18,19	19	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP009243.1_3058690_3058945_-,NA|135aa|up_7|NZ_CP009243.1_3059092_3059497_+,NA|64aa|up_6|NZ_CP009243.1_3059493_3059685_+,NA|86aa|up_4|NZ_CP009243.1_3061271_3061529_+,NA|104aa|up_3|NZ_CP009243.1_3061633_3061945_+,NA|203aa|up_2|NZ_CP009243.1_3062364_3062973_+,NA	NA|92aa|up_9|NZ_CP009243.1_3058239_3058515_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP009243.1_3058690_3058945_-	NA	NA|135aa|up_7|NZ_CP009243.1_3059092_3059497_+	NA	NA|64aa|up_6|NZ_CP009243.1_3059493_3059685_+	NA	NA|385aa|up_5|NZ_CP009243.1_3059883_3061038_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP009243.1_3061271_3061529_+	NA	NA|104aa|up_3|NZ_CP009243.1_3061633_3061945_+	NA	NA|203aa|up_2|NZ_CP009243.1_3062364_3062973_+	NA	NA|470aa|up_1|NZ_CP009243.1_3063043_3064453_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP009243.1_3064449_3065262_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP009243.1_3066864_3068126_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP009243.1_3070379_3070721_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP009243.1_3070721_3071738_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_3|NZ_CP009243.1_3072994_3074122_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP009243.1_3074118_3075027_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP009243.1_3075007_3075718_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP009243.1_3075727_3076102_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP009243.1_3076098_3078537_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP009243.1_3078533_3079256_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP009243.1_3079655_3080201_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	9	3068161-3070331	5,5,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	29,29,28	29	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP009243.1_3058690_3058945_-,NA|135aa|up_8|NZ_CP009243.1_3059092_3059497_+,NA|64aa|up_7|NZ_CP009243.1_3059493_3059685_+,NA|86aa|up_5|NZ_CP009243.1_3061271_3061529_+,NA|104aa|up_4|NZ_CP009243.1_3061633_3061945_+,NA|203aa|up_3|NZ_CP009243.1_3062364_3062973_+,NA	NA|85aa|up_9|NZ_CP009243.1_3058690_3058945_-	NA	NA|135aa|up_8|NZ_CP009243.1_3059092_3059497_+	NA	NA|64aa|up_7|NZ_CP009243.1_3059493_3059685_+	NA	NA|385aa|up_6|NZ_CP009243.1_3059883_3061038_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP009243.1_3061271_3061529_+	NA	NA|104aa|up_4|NZ_CP009243.1_3061633_3061945_+	NA	NA|203aa|up_3|NZ_CP009243.1_3062364_3062973_+	NA	NA|470aa|up_2|NZ_CP009243.1_3063043_3064453_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP009243.1_3064449_3065262_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP009243.1_3066864_3068126_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP009243.1_3070379_3070721_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009243.1_3070721_3071738_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NZ_CP009243.1_3072994_3074122_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NZ_CP009243.1_3074118_3075027_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP009243.1_3075007_3075718_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP009243.1_3075727_3076102_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP009243.1_3076098_3078537_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_7|NZ_CP009243.1_3078533_3079256_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP009243.1_3079655_3080201_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP009243.1_3080472_3081357_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	10	3925650-3926394	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCNNCGGCGGNNCCGGCGGNNNCGGCGG	28	3	9	3925678-3925739|3925678-3925739|3925678-3925739|3925768-3925814|3925768-3925814|3925843-3925868|3925843-3925868|3925843-3925868|3925843-3925868	NZ_CP009243.1_3924681-3924742|NZ_CP009243.1_3925032-3925093|NZ_CP009243.1_3925318-3925379|NZ_CP009243.1_3924420-3924466|NZ_CP009243.1_3924771-3924817|NZ_CP009243.1_3910346-3910371|NZ_CP009243.1_3924495-3924520|NZ_CP009243.1_3924846-3924871|NZ_CP009243.1_3925131-3925156	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP009243.1_3929709_3930549_+	NA|374aa|up_9|NZ_CP009243.1_3901056_3902178_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_8|NZ_CP009243.1_3902248_3903757_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1373aa|up_7|NZ_CP009243.1_3903927_3908046_+	pfam00934, PE, PE family	NA|2051aa|up_6|NZ_CP009243.1_3908336_3914489_+	pfam00934, PE, PE family	NA|516aa|up_5|NZ_CP009243.1_3914655_3916203_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_4|NZ_CP009243.1_3916199_3917036_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|126aa|up_3|NZ_CP009243.1_3919544_3919922_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|672aa|up_2|NZ_CP009243.1_3919955_3921971_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|172aa|up_1|NZ_CP009243.1_3921967_3922483_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|219aa|up_0|NZ_CP009243.1_3922611_3923268_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP009243.1_3927102_3928749_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP009243.1_3928822_3929614_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP009243.1_3929709_3930549_+	NA	NA|237aa|down_3|NZ_CP009243.1_3931827_3932538_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_4|NZ_CP009243.1_3932602_3933646_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_5|NZ_CP009243.1_3933798_3934710_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_6|NZ_CP009243.1_3934725_3935790_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_7|NZ_CP009243.1_3935806_3936991_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_8|NZ_CP009243.1_3937032_3938064_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP009243.1_3938077_3938602_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	11	4064403-4064728	6	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	1	38	4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449|4064428-4064449	NZ_CP009243.1_971962-971941|NZ_CP009243.1_339388-339367|NZ_CP009243.1_1842579-1842558|NZ_CP009243.1_2396844-2396823|NZ_CP009243.1_3723134-3723113|NZ_CP009243.1_3923695-3923716|NZ_CP009243.1_335191-335170|NZ_CP009243.1_335377-335356|NZ_CP009243.1_336484-336463|NZ_CP009243.1_336988-336967|NZ_CP009243.1_339082-339061|NZ_CP009243.1_673748-673727|NZ_CP009243.1_675197-675176|NZ_CP009243.1_841257-841278|NZ_CP009243.1_930542-930521|NZ_CP009243.1_971482-971461|NZ_CP009243.1_1093116-1093137|NZ_CP009243.1_1192076-1192055|NZ_CP009243.1_1194278-1194257|NZ_CP009243.1_1487965-1487944|NZ_CP009243.1_1488616-1488595|NZ_CP009243.1_1634855-1634834|NZ_CP009243.1_1973627-1973606|NZ_CP009243.1_1974855-1974834|NZ_CP009243.1_1985230-1985251|NZ_CP009243.1_2044905-2044884|NZ_CP009243.1_2761183-2761162|NZ_CP009243.1_3109539-3109560|NZ_CP009243.1_3726038-3726017|NZ_CP009243.1_3764563-3764584|NZ_CP009243.1_3912006-3912027|NZ_CP009243.1_3912330-3912351|NZ_CP009243.1_3912927-3912948|NZ_CP009243.1_3913551-3913572|NZ_CP009243.1_3918602-3918623|NZ_CP009243.1_3920696-3920717|NZ_CP009243.1_4007908-4007887|NZ_CP009243.1_4008007-4007986	NA	5	5	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_9|NZ_CP009243.1_4051455_4051647_+,NA|193aa|up_5|NZ_CP009243.1_4057905_4058484_-,NA|100aa|down_1|NZ_CP009243.1_4065387_4065687_-,NA|257aa|down_8|NZ_CP009243.1_4071652_4072423_-	NA|64aa|up_9|NZ_CP009243.1_4051455_4051647_+	NA	NA|402aa|up_8|NZ_CP009243.1_4051811_4053017_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_7|NZ_CP009243.1_4053102_4054752_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_6|NZ_CP009243.1_4054748_4057553_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_5|NZ_CP009243.1_4057905_4058484_-	NA	NA|68aa|up_4|NZ_CP009243.1_4058623_4058827_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_3|NZ_CP009243.1_4059076_4061392_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_2|NZ_CP009243.1_4061528_4061813_+	pfam00934, PE, PE family	NA|346aa|up_1|NZ_CP009243.1_4062136_4063174_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|105aa|up_0|NZ_CP009243.1_4063927_4064242_+	pfam00934, PE, PE family	NA|126aa|down_0|NZ_CP009243.1_4065047_4065425_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NZ_CP009243.1_4065387_4065687_-	NA	NA|69aa|down_2|NZ_CP009243.1_4065710_4065917_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NZ_CP009243.1_4065926_4066502_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NZ_CP009243.1_4066525_4067326_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NZ_CP009243.1_4067322_4068486_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NZ_CP009243.1_4068482_4069535_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NZ_CP009243.1_4070034_4070898_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NZ_CP009243.1_4071652_4072423_-	NA	NA|549aa|down_9|NZ_CP009243.1_4072419_4074066_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	12	4064805-4064883	7	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	0	0	NA	NA	NA	1	1	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_9|NZ_CP009243.1_4051455_4051647_+,NA|193aa|up_5|NZ_CP009243.1_4057905_4058484_-,NA|100aa|down_1|NZ_CP009243.1_4065387_4065687_-,NA|257aa|down_8|NZ_CP009243.1_4071652_4072423_-	NA|64aa|up_9|NZ_CP009243.1_4051455_4051647_+	NA	NA|402aa|up_8|NZ_CP009243.1_4051811_4053017_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_7|NZ_CP009243.1_4053102_4054752_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_6|NZ_CP009243.1_4054748_4057553_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_5|NZ_CP009243.1_4057905_4058484_-	NA	NA|68aa|up_4|NZ_CP009243.1_4058623_4058827_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_3|NZ_CP009243.1_4059076_4061392_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_2|NZ_CP009243.1_4061528_4061813_+	pfam00934, PE, PE family	NA|346aa|up_1|NZ_CP009243.1_4062136_4063174_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|105aa|up_0|NZ_CP009243.1_4063927_4064242_+	pfam00934, PE, PE family	NA|126aa|down_0|NZ_CP009243.1_4065047_4065425_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NZ_CP009243.1_4065387_4065687_-	NA	NA|69aa|down_2|NZ_CP009243.1_4065710_4065917_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NZ_CP009243.1_4065926_4066502_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NZ_CP009243.1_4066525_4067326_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NZ_CP009243.1_4067322_4068486_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NZ_CP009243.1_4068482_4069535_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NZ_CP009243.1_4070034_4070898_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NZ_CP009243.1_4071652_4072423_-	NA	NA|549aa|down_9|NZ_CP009243.1_4072419_4074066_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_001274555.1_ASM127455v1	NZ_CP009243	Mycobacterium tuberculosis variant bovis BCG strain Russia 368 chromosome, complete genome	13	4081066-4081154	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP009243.1_4071652_4072423_-,NA|233aa|up_0|NZ_CP009243.1_4080170_4080869_-,NA|126aa|down_6|NZ_CP009243.1_4086389_4086767_+	NA|388aa|up_9|NZ_CP009243.1_4067322_4068486_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP009243.1_4068482_4069535_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP009243.1_4070034_4070898_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP009243.1_4071652_4072423_-	NA	NA|549aa|up_5|NZ_CP009243.1_4072419_4074066_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP009243.1_4074062_4074926_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP009243.1_4074918_4075845_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP009243.1_4075846_4077472_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP009243.1_4078179_4080135_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP009243.1_4080170_4080869_-	NA	NA|173aa|down_0|NZ_CP009243.1_4081214_4081733_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP009243.1_4081733_4082717_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP009243.1_4082709_4083903_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP009243.1_4083908_4084730_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP009243.1_4084861_4085545_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP009243.1_4085544_4086282_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP009243.1_4086389_4086767_+	NA	NA|225aa|down_7|NZ_CP009243.1_4086865_4087540_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP009243.1_4087645_4088440_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP009243.1_4088446_4088902_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
