The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	4411829	2936211	2971577	4411829	protease,transposase,capsid,terminase,tRNA,integrase,head	Tupanvirus(11.11%)	41	2965012:2965039	2975994:2976021
WP_003413486.1|2936211_2938290_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2938398_2938626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031659639.1|2938622_2940008_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2940352_2940853_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2940869_2941310_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2941456_2942134_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2942118_2942472_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2942484_2942910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2942906_2943581_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2943658_2944480_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2944615_2945509_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2945511_2946330_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2946344_2947526_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2947584_2948016_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2948529_2949771_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2950080_2950443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2950789_2951914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2951915_2952455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2952594_2953893_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2953931_2954213_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2954357_2954843_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2954869_2955127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025096392.1|2955127_2957464_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2957492_2957735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2957735_2958413_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2958608_2959265_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2959427_2959874_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2960048_2960381_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2960500_2960860_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2960961_2961420_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2961555_2961936_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2961932_2963429_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2963618_2963855_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2963927_2964101_+	hypothetical protein	NA	NA	NA	NA	NA
2965012:2965039	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2965145_2965577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2965573_2966572_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2966585_2967050_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2967182_2968443_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003901443.1|2968817_2970257_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2970264_2970798_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2970950_2971577_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2975994:2976021	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	4411829	3709709	3795778	4411829	transposase,tRNA	Burkholderia_virus(28.57%)	56	NA	NA
WP_087902221.1|3709709_3710971_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711264_3711426_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711447_3712977_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3712909_3713848_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3713856_3715224_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715292_3716510_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716605_3718114_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718110_3719262_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719452_3720298_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720772_3721213_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721246_3722116_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722136_3723147_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723431_3724064_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724130_3725360_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725642_3726992_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727003_3728143_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728139_3728871_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_025234886.1|3728879_3736493_-	PPE family protein	NA	NA	NA	NA	NA
WP_031675263.1|3736541_3742178_-	PE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742607_3742865_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_031664658.1|3743120_3752594_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753219_3753666_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3753702_3754443_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3754737_3755025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3766751_3767546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767627_3767999_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3767896_3768115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768141_3768402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768516_3768906_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3768919_3769213_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769209_3770055_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770178_3770454_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770450_3770708_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3770749_3771940_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772056_3772425_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772421_3772973_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3772979_3773561_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773541_3773910_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3773887_3774280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025096402.1|3774276_3776907_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3777142_3777607_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3777973_3779749_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3779749_3780394_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780392_3780827_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3780915_3784155_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784346_3785687_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3785728_3786904_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3786957_3787062_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787140_3787782_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3787782_3788031_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788035_3789463_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789570_3790224_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790262_3791768_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3791772_3792663_-	diterpene synthase	NA	NA	NA	NA	NA
WP_078750126.1|3792671_3794465_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_144061628.1|3794516_3795778_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
