The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012257	Cronobacter universalis NCTC 9529 chromosome, complete genome	4307096	1831823	1842022	4307096	tRNA	Tupanvirus(14.29%)	12	NA	NA
WP_007696742.1|1831823_1833752_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.9	5.9e-132
WP_012905609.1|1833755_1834298_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.3	1.1e-14
WP_001124225.1|1834395_1834593_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_000124850.1|1834640_1834997_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_106120997.1|1835118_1835163_+	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_038857359.1|1835383_1836367_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	42.6	1.4e-33
WP_007696748.1|1836382_1838770_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	26.0	1.6e-06
WP_007676383.1|1838774_1839074_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_007696751.1|1839151_1840153_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
WP_007696753.1|1840182_1840734_+	glutathione peroxidase	NA	NA	NA	NA	NA
WP_007696756.1|1840733_1841480_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	29.8	4.9e-10
WP_038857358.1|1841557_1842022_+	endopeptidase	NA	S5MM68	Bacillus_phage	36.0	8.0e-11
>prophage 2
NZ_CP012257	Cronobacter universalis NCTC 9529 chromosome, complete genome	4307096	2035518	2084249	4307096	tail,holin,capsid,protease,terminase	Cronobacter_phage(49.09%)	80	NA	NA
WP_007706431.1|2035518_2036805_-	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	55.5	2.8e-130
WP_032804352.1|2036838_2037087_-	excisionase family protein	NA	S4TND0	Salmonella_phage	51.9	8.9e-17
WP_032804354.1|2037149_2037404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032804356.1|2037645_2037879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007706441.1|2037946_2038297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032804359.1|2038289_2038487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007706444.1|2038483_2038645_-	DUF2737 family protein	NA	A0A1V0E5L8	Salmonella_phage	64.0	5.2e-10
WP_007706447.1|2038677_2038872_-	hypothetical protein	NA	A0A2H4IYD2	uncultured_Caudovirales_phage	62.3	9.7e-11
WP_007706450.1|2038877_2039360_-	siphovirus Gp157 family protein	NA	K7P6T5	Enterobacteria_phage	68.1	8.5e-56
WP_007706453.1|2039343_2040249_-	DNA recombination protein RecT	NA	K7PKG9	Enterobacteria_phage	81.1	1.2e-135
WP_007706454.1|2040248_2040557_-	hypothetical protein	NA	F1C5B9	Cronobacter_phage	95.1	2.7e-47
WP_007706457.1|2040648_2040804_-	host cell division inhibitory peptide Kil	NA	A5VWA5	Enterobacteria_phage	69.8	2.7e-11
WP_007706460.1|2040782_2040920_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	68.4	5.6e-05
WP_007706462.1|2041021_2041171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071602519.1|2041322_2041529_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_032804363.1|2041537_2041837_-	hypothetical protein	NA	C6ZCW1	Enterobacteria_phage	66.7	1.8e-27
WP_133051356.1|2042383_2042629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050555777.1|2042609_2043107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007706464.1|2043103_2043505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001299796.1|2043558_2044206_-	LexA family transcriptional regulator	NA	K7PH19	Enterobacteria_phage	100.0	1.2e-121
WP_001033078.1|2044314_2044533_+	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	100.0	1.1e-34
WP_007706465.1|2044651_2044930_+	phage repressor	NA	K7PHN8	Enterobacterial_phage	81.5	1.6e-35
WP_085958994.1|2044964_2045111_+	DUF2740 family protein	NA	A0A075B8K7	Enterobacteria_phage	77.1	5.4e-14
WP_038857252.1|2045103_2045940_+	replication protein	NA	A0A1R3Y5R9	Salmonella_virus	54.0	3.1e-77
WP_007706472.1|2045936_2047307_+	AAA family ATPase	NA	Q9MCP7	Enterobacteria_phage	81.5	1.6e-208
WP_007706475.1|2047329_2047572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007706484.1|2047568_2048048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032805263.1|2048315_2048666_+	hypothetical protein	NA	F1C5C6	Cronobacter_phage	94.8	6.6e-58
WP_032804378.1|2048803_2049106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155886423.1|2049105_2049282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007706489.1|2049262_2049703_+	recombination protein NinB	NA	F1C5C7	Cronobacter_phage	94.5	2.4e-73
WP_032805264.1|2049699_2049873_+	hypothetical protein	NA	Q8HAF7	Salmonella_phage	82.5	9.5e-26
WP_032804379.1|2049839_2050022_+	NinE family protein	NA	C6ZR57	Salmonella_phage	63.8	2.0e-13
WP_007706493.1|2050011_2050236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032804380.1|2050235_2050517_+	DUF2591 family protein	NA	G0ZNC2	Cronobacter_phage	68.4	4.1e-26
WP_032804381.1|2050509_2050692_+	NinF family protein	NA	A0A0M4S6T3	Salmonella_phage	70.0	8.2e-20
WP_032804383.1|2050947_2051343_+	RusA family crossover junction endodeoxyribonuclease	NA	F1C5C9	Cronobacter_phage	96.9	6.5e-70
WP_044599888.1|2051339_2051531_+	hypothetical protein	NA	A0A1R3Y5V4	Salmonella_virus	57.1	5.2e-09
WP_032804384.1|2051527_2051707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032804385.1|2051703_2052468_+	antitermination protein	NA	G0ZNC6	Cronobacter_phage	98.8	3.6e-133
WP_032804386.1|2052614_2052809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105874763.1|2052870_2052930_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA	NA
WP_012815662.1|2053196_2053517_+|holin	holin	holin	F1C5D1	Cronobacter_phage	100.0	3.7e-55
WP_007706509.1|2053509_2054136_+	glycoside hydrolase family 19 protein	NA	F1C5D2	Cronobacter_phage	96.6	6.8e-114
WP_007706518.1|2054132_2054546_+	DUF2570 domain-containing protein	NA	F1C5D3	Cronobacter_phage	95.6	9.8e-53
WP_032804387.1|2054786_2055233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007706523.1|2055898_2056585_+	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	82.9	3.7e-105
WP_007706527.1|2056839_2057046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032804388.1|2057086_2057479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007706533.1|2057530_2058088_+|terminase	terminase small subunit	terminase	G0ZND3	Cronobacter_phage	98.9	7.2e-99
WP_032804389.1|2058074_2059538_+	phage DNA Packaging protein	NA	G0ZND4	Cronobacter_phage	99.4	1.7e-280
WP_007706535.1|2059549_2061007_+	DUF1073 domain-containing protein	NA	F1C5D7	Cronobacter_phage	91.1	1.1e-247
WP_007706545.1|2060960_2061941_+|capsid	minor capsid protein	capsid	F1C5D8	Cronobacter_phage	94.9	4.6e-157
WP_032804391.1|2061975_2062194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007706549.1|2062447_2063848_+	DUF2213 domain-containing protein	NA	F1C5D9	Cronobacter_phage	97.4	3.9e-242
WP_007706555.1|2063853_2064282_+	hypothetical protein	NA	F1C5E0	Cronobacter_phage	100.0	1.2e-72
WP_007706557.1|2064294_2065386_+	hypothetical protein	NA	F1C5E1	Cronobacter_phage	97.2	1.9e-204
WP_007706560.1|2065395_2065593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007706565.1|2065595_2065976_+	hypothetical protein	NA	F1C5E2	Cronobacter_phage	99.2	4.3e-63
WP_007706566.1|2066244_2066595_+	hypothetical protein	NA	G0ZNE2	Cronobacter_phage	69.6	2.5e-41
WP_007706567.1|2066596_2066965_+	hypothetical protein	NA	F1C5E3	Cronobacter_phage	98.4	6.3e-59
WP_007706568.1|2066961_2067345_+	hypothetical protein	NA	F1C5E4	Cronobacter_phage	96.1	5.9e-68
WP_032804392.1|2067368_2067863_+	hypothetical protein	NA	F1C5E5	Cronobacter_phage	97.6	2.8e-86
WP_032804393.1|2067902_2069360_+	glycosyltransferase family 2 protein	NA	F1C5E6	Cronobacter_phage	96.5	1.1e-284
WP_032804394.1|2069341_2069935_+	hypothetical protein	NA	F1C5E7	Cronobacter_phage	93.4	3.4e-107
WP_032805266.1|2069931_2070606_+	hypothetical protein	NA	F1C5E8	Cronobacter_phage	96.8	7.3e-122
WP_032804395.1|2070672_2071035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032804396.1|2071102_2071321_+	hypothetical protein	NA	H6WRV2	Salmonella_phage	54.9	2.8e-14
WP_050555903.1|2071464_2071758_-	Arc family DNA-binding protein	NA	A0A0M5M1J2	Salmonella_phage	48.7	1.5e-10
WP_007706592.1|2073133_2073490_+	hypothetical protein	NA	G0ZNF1	Cronobacter_phage	99.2	7.9e-59
WP_007706594.1|2073614_2073908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038857533.1|2074226_2076377_+|tail	phage tail protein	tail	F1C5E9	Cronobacter_phage	71.8	1.9e-216
WP_007706599.1|2076376_2076724_+|tail	phage tail protein	tail	H6WRV8	Salmonella_phage	79.1	2.9e-50
WP_032804398.1|2076760_2077465_+|tail	phage minor tail protein L	tail	A0A1V0E5N2	Salmonella_phage	89.7	5.7e-125
WP_071602529.1|2077464_2078184_+	C40 family peptidase	NA	A0A1V0E5M9	Salmonella_phage	72.2	6.0e-106
WP_032804400.1|2078126_2078654_+|tail	tail assembly protein	tail	H6WRW3	Salmonella_phage	63.8	6.9e-51
WP_007706604.1|2078663_2081798_+	host specificity protein J	NA	I6R9B3	Salmonella_phage	83.1	0.0e+00
WP_050555904.1|2082150_2082735_+	hypothetical protein	NA	F1C570	Cronobacter_phage	56.4	3.9e-55
WP_050555780.1|2083732_2084056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032804405.1|2084024_2084249_+	hypothetical protein	NA	A0A0H5BIA0	Pseudomonas_phage	50.0	2.6e-15
>prophage 3
NZ_CP012257	Cronobacter universalis NCTC 9529 chromosome, complete genome	4307096	2701095	2712697	4307096		Bacillus_phage(28.57%)	11	NA	NA
WP_050569305.1|2701095_2702766_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	38.1	1.3e-23
WP_007699285.1|2702966_2703149_-	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_038856824.1|2703238_2704153_-	DUF808 family protein	NA	NA	NA	NA	NA
WP_032804735.1|2704331_2705243_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_038856821.1|2705246_2705744_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	47.6	8.8e-32
WP_162139047.1|2705727_2707095_-	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	54.1	5.0e-101
WP_007699299.1|2707221_2707920_-	phosphohydrolase	NA	S4W232	Pandoravirus	26.3	4.3e-08
WP_038856815.1|2708588_2709713_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	54.9	2.6e-103
WP_007699307.1|2709867_2710107_+	DinI family protein	NA	K7PKM2	Enterobacterial_phage	86.1	1.5e-32
WP_081589413.1|2710592_2711147_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007699316.1|2711155_2712697_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.1	1.9e-16
>prophage 4
NZ_CP012257	Cronobacter universalis NCTC 9529 chromosome, complete genome	4307096	3547505	3576509	4307096	portal,capsid,transposase,tRNA,terminase	Cronobacter_phage(38.46%)	25	NA	NA
WP_007707308.1|3547505_3548519_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.2	1.2e-107
WP_001144069.1|3548767_3548983_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_007707301.1|3549095_3550841_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	2.1e-75
WP_007707299.1|3551080_3552925_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_007707297.1|3553167_3553587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007707296.1|3553639_3554146_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_115185109.1|3554471_3555236_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_007707265.1|3555204_3555390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038856324.1|3556119_3557820_-	protein phage	NA	F1BUJ7	Cronobacter_phage	93.5	2.0e-261
WP_038856323.1|3557822_3558371_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	92.3	4.6e-82
WP_007701037.1|3559513_3560338_-|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	93.8	4.6e-150
WP_007701044.1|3560981_3562022_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	99.1	1.1e-198
WP_032804860.1|3562018_3562342_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	98.0	3.2e-51
WP_007701049.1|3562490_3563528_+	DUF2806 domain-containing protein	NA	NA	NA	NA	NA
WP_032804861.1|3563582_3563813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007701051.1|3563931_3565032_-|capsid	phage capsid scaffolding protein	capsid	Q94MB7	Escherichia_virus	67.3	1.6e-89
WP_007701053.1|3565198_3566968_+|terminase	terminase ATPase subunit family protein	terminase	A0A0M4RE51	Salmonella_phage	85.5	2.9e-303
WP_007701055.1|3566967_3567990_+|portal	phage portal protein	portal	Q858W8	Yersinia_virus	83.8	8.7e-167
WP_007701057.1|3567974_3569576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162139045.1|3569990_3570254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081589453.1|3570312_3571029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032804864.1|3571350_3572070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032804867.1|3573918_3574155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081589454.1|3574257_3574881_+	phage repressor protein CI	NA	A0A218M4J1	Erwinia_phage	38.2	2.1e-30
WP_115185090.1|3575388_3576509_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.7	6.6e-51
