assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001278905.1_ASM127890v1	NZ_CP012252	Klebsiella quasipneumoniae strain HKUOPLA chromosome, complete genome	1	1202148-1202299	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	GATTGCCCGGCGGCGCTGCGCTTGCCGGGCCTACGAAGGGGGCGAACC	48	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|240aa|up_9|NZ_CP012252.1_1190561_1191281_-	PRK11697, PRK11697, two-component system response regulator BtsR	NA|563aa|up_8|NZ_CP012252.1_1191274_1192963_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|38aa|up_7|NZ_CP012252.1_1193192_1193306_+	PRK13681, PRK13681, protein YohO	NA|246aa|up_6|NZ_CP012252.1_1193280_1194018_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|316aa|up_5|NZ_CP012252.1_1194001_1194949_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|386aa|up_4|NZ_CP012252.1_1194941_1196099_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|306aa|up_3|NZ_CP012252.1_1196106_1197024_-	cd13616, PBP2_OsmF, Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|766aa|up_2|NZ_CP012252.1_1197160_1199458_-	PRK15098, PRK15098, beta-glucosidase BglX	NA|582aa|up_1|NZ_CP012252.1_1199652_1201398_+	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|185aa|up_0|NZ_CP012252.1_1201483_1202038_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_0|NZ_CP012252.1_1202360_1203311_-	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|196aa|down_1|NZ_CP012252.1_1203499_1204087_-	pfam06930, DUF1282, Protein of unknown function (DUF1282)	NA|190aa|down_2|NZ_CP012252.1_1204240_1204810_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|480aa|down_3|NZ_CP012252.1_1204843_1206283_-	PRK11459, PRK11459, multidrug resistance outer membrane protein MdtQ; Provisional	NA|245aa|down_4|NZ_CP012252.1_1206411_1207146_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|465aa|down_5|NZ_CP012252.1_1207179_1208574_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|621aa|down_6|NZ_CP012252.1_1208589_1210452_-	PRK09824, PRK09824, PTS system beta-glucoside-specific transporter subunits IIABC; Provisional	NA|304aa|down_7|NZ_CP012252.1_1210592_1211504_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|455aa|down_8|NZ_CP012252.1_1211581_1212946_-	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|311aa|down_9|NZ_CP012252.1_1213302_1214235_-	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC
GCF_001278905.1_ASM127890v1	NZ_CP012252	Klebsiella quasipneumoniae strain HKUOPLA chromosome, complete genome	2	1433514-1433603	2	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	CACGCAGATTCCATAACCGCACCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA|80aa|up_9|NZ_CP012252.1_1425049_1425289_-,NA	NA|80aa|up_9|NZ_CP012252.1_1425049_1425289_-	NA	NA|289aa|up_8|NZ_CP012252.1_1425285_1426152_-	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase	NA|433aa|up_7|NZ_CP012252.1_1426234_1427533_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional	NA|132aa|up_6|NZ_CP012252.1_1427696_1428092_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|304aa|up_5|NZ_CP012252.1_1428088_1429000_-	PRK11761, cysM, cysteine synthase CysM	NA|365aa|up_4|NZ_CP012252.1_1429118_1430213_-	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA|292aa|up_3|NZ_CP012252.1_1430202_1431078_-	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW	NA|278aa|up_2|NZ_CP012252.1_1431077_1431911_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|339aa|up_1|NZ_CP012252.1_1431910_1432927_-	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP	NA|121aa|up_0|NZ_CP012252.1_1433127_1433490_+	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|300aa|down_0|NZ_CP012252.1_1433651_1434551_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|192aa|down_1|NZ_CP012252.1_1434645_1435221_-	PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional	NA|150aa|down_2|NZ_CP012252.1_1435282_1435732_-	pfam11143, DUF2919, Protein of unknown function (DUF2919)	NA|142aa|down_3|NZ_CP012252.1_1435718_1436144_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|291aa|down_4|NZ_CP012252.1_1436355_1437228_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|300aa|down_5|NZ_CP012252.1_1437227_1438127_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|760aa|down_6|NZ_CP012252.1_1438180_1440460_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|319aa|down_7|NZ_CP012252.1_1440754_1441711_+	PRK12346, PRK12346, transaldolase A; Provisional	NA|665aa|down_8|NZ_CP012252.1_1441727_1443722_+	PRK12753, PRK12753, transketolase; Reviewed	NA|349aa|down_9|NZ_CP012252.1_1443711_1444758_-	pfam06674, DUF1176, Protein of unknown function (DUF1176)
GCF_001278905.1_ASM127890v1	NZ_CP012252	Klebsiella quasipneumoniae strain HKUOPLA chromosome, complete genome	3	2685967-2686078	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,csa3,cas3,RT,WYL	Unclear	GTAGCCCTGCTAAGCGTAGCGCAAGCAGGGA	31	0	0	NA	NA	NA	1	1	Unclear	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|707aa|up_9|NZ_CP012252.1_2674580_2676701_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|up_8|NZ_CP012252.1_2676862_2677552_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	cas3|694aa|up_7|NZ_CP012252.1_2677557_2679639_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|337aa|up_6|NZ_CP012252.1_2679687_2680698_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|249aa|up_5|NZ_CP012252.1_2680848_2681595_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|143aa|up_4|NZ_CP012252.1_2681595_2682024_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|200aa|up_3|NZ_CP012252.1_2682136_2682736_+	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|256aa|up_2|NZ_CP012252.1_2682845_2683613_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|435aa|up_1|NZ_CP012252.1_2683704_2685009_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|257aa|up_0|NZ_CP012252.1_2685073_2685844_-	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|330aa|down_0|NZ_CP012252.1_2686086_2687076_-	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein	NA|82aa|down_1|NZ_CP012252.1_2687228_2687474_-	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|284aa|down_2|NZ_CP012252.1_2687916_2688768_+	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|504aa|down_3|NZ_CP012252.1_2688789_2690301_+	PRK00047, glpK, glycerol kinase GlpK	NA|401aa|down_4|NZ_CP012252.1_2690415_2691618_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|down_5|NZ_CP012252.1_2691902_2693294_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|572aa|down_6|NZ_CP012252.1_2693444_2695160_+	pfam05170, AsmA, AsmA family	NA|520aa|down_7|NZ_CP012252.1_2695411_2696971_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|460aa|down_8|NZ_CP012252.1_2696983_2698363_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|241aa|down_9|NZ_CP012252.1_2699117_2699840_-	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_001278905.1_ASM127890v1	NZ_CP012252	Klebsiella quasipneumoniae strain HKUOPLA chromosome, complete genome	4	3294654-3294771	4	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	CCGGATAGCGGCTGGCGCCTTATCCGGGCTAC	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|76aa|up_9|NZ_CP012252.1_3286438_3286666_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|150aa|up_8|NZ_CP012252.1_3286707_3287157_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|225aa|up_7|NZ_CP012252.1_3287265_3287940_-	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]	NA|207aa|up_6|NZ_CP012252.1_3288159_3288780_+	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional	NA|468aa|up_5|NZ_CP012252.1_3289085_3290489_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|221aa|up_4|NZ_CP012252.1_3290593_3291256_-	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE	NA|324aa|up_3|NZ_CP012252.1_3291338_3292310_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|275aa|up_2|NZ_CP012252.1_3292385_3293210_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|283aa|up_1|NZ_CP012252.1_3293288_3294137_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|124aa|up_0|NZ_CP012252.1_3294227_3294599_+	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|648aa|down_0|NZ_CP012252.1_3294825_3296769_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|248aa|down_1|NZ_CP012252.1_3296960_3297704_+	PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional	NA|186aa|down_2|NZ_CP012252.1_3297693_3298251_-	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only]	NA|69aa|down_3|NZ_CP012252.1_3298575_3298782_+	pfam06526, DUF1107, Protein of unknown function (DUF1107)	NA|291aa|down_4|NZ_CP012252.1_3298843_3299716_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|670aa|down_5|NZ_CP012252.1_3299746_3301756_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|411aa|down_6|NZ_CP012252.1_3301774_3303007_-	PRK09528, lacY, galactoside permease; Reviewed	NA|446aa|down_7|NZ_CP012252.1_3303207_3304545_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|213aa|down_8|NZ_CP012252.1_3304725_3305364_-	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|578aa|down_9|NZ_CP012252.1_3305573_3307307_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]
GCF_001278905.1_ASM127890v1	NZ_CP012252	Klebsiella quasipneumoniae strain HKUOPLA chromosome, complete genome	5	3532725-3532834	5	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	TAAAAAAGGCAACTTGCGTTGCCTTTTT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|426aa|up_9|NZ_CP012252.1_3521185_3522463_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|up_8|NZ_CP012252.1_3522878_3523658_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|up_7|NZ_CP012252.1_3523767_3525090_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|up_6|NZ_CP012252.1_3525142_3526366_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|up_5|NZ_CP012252.1_3526469_3527189_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|339aa|up_4|NZ_CP012252.1_3527278_3528295_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|216aa|up_3|NZ_CP012252.1_3528294_3528942_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|324aa|up_2|NZ_CP012252.1_3529046_3530018_+	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|461aa|up_1|NZ_CP012252.1_3530027_3531410_+	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|411aa|up_0|NZ_CP012252.1_3531431_3532664_+	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|556aa|down_0|NZ_CP012252.1_3532839_3534507_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|646aa|down_1|NZ_CP012252.1_3534735_3536673_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|110aa|down_2|NZ_CP012252.1_3536761_3537091_+	PRK01381, PRK01381, trp operon repressor	NA|172aa|down_3|NZ_CP012252.1_3537077_3537593_-	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|216aa|down_4|NZ_CP012252.1_3537706_3538354_+	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|290aa|down_5|NZ_CP012252.1_3538350_3539220_-	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|158aa|down_6|NZ_CP012252.1_3539429_3539903_+	PRK10756, PRK10756, protein CreA	NA|230aa|down_7|NZ_CP012252.1_3539915_3540605_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|475aa|down_8|NZ_CP012252.1_3540604_3542029_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|453aa|down_9|NZ_CP012252.1_3542088_3543447_+	PRK11715, PRK11715, cell envelope integrity protein CreD
GCF_001278905.1_ASM127890v1	NZ_CP012252	Klebsiella quasipneumoniae strain HKUOPLA chromosome, complete genome	6	4229103-4229215	6	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	ATGCGCCACCGGATCCTCAATGATCGT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|312aa|up_9|NZ_CP012252.1_4214398_4215334_-	cd19967, PBP1_TmRBP-like, D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP)	NA|507aa|up_8|NZ_CP012252.1_4215493_4217014_-	cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|317aa|up_7|NZ_CP012252.1_4217361_4218312_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|277aa|up_6|NZ_CP012252.1_4218694_4219525_+	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	NA|312aa|up_5|NZ_CP012252.1_4219517_4220453_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|210aa|up_4|NZ_CP012252.1_4220489_4221119_-	PRK10251, PRK10251, enterobactin synthase subunit EntD	NA|743aa|up_3|NZ_CP012252.1_4221185_4223414_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|403aa|up_2|NZ_CP012252.1_4223673_4224882_+	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional	NA|68aa|up_1|NZ_CP012252.1_4224909_4225113_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1294aa|up_0|NZ_CP012252.1_4225123_4229005_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|331aa|down_0|NZ_CP012252.1_4229946_4230939_-	PRK10440, PRK10440, iron-enterobactin ABC transporter permease	NA|336aa|down_1|NZ_CP012252.1_4230935_4231943_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|414aa|down_2|NZ_CP012252.1_4232055_4233297_+	PRK10489, PRK10489, enterobactin transporter EntS	NA|320aa|down_3|NZ_CP012252.1_4233428_4234388_-	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional	NA|392aa|down_4|NZ_CP012252.1_4234576_4235752_+	PRK15016, PRK15016, isochorismate synthase EntC; Provisional	NA|536aa|down_5|NZ_CP012252.1_4235761_4237369_+	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|284aa|down_6|NZ_CP012252.1_4237382_4238234_+	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|252aa|down_7|NZ_CP012252.1_4238233_4238989_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|138aa|down_8|NZ_CP012252.1_4238989_4239403_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|702aa|down_9|NZ_CP012252.1_4239810_4241916_+	PRK15015, PRK15015, carbon starvation protein CstA
