assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001280205.1_ASM128020v1	NZ_CP012573	Clavibacter michiganensis subsp. capsici strain PF008 chromosome, complete genome	1	2533127-2533354	1	PILER-CR	no		csa3,WYL,DEDDh,cas3	Orphan	CGCCACGGTCAACCAGTGCAACGGCTCCGGCAACGGCGGCGGCGC	45	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,DEDDh,cas3	NA|83aa|up_5|NZ_CP012573.1_2523259_2523508_-,NA|198aa|up_2|NZ_CP012573.1_2529370_2529964_-,NA|90aa|down_8|NZ_CP012573.1_2542424_2542694_+	NA|299aa|up_9|NZ_CP012573.1_2520778_2521675_-	cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose	NA|192aa|up_8|NZ_CP012573.1_2521715_2522291_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|137aa|up_7|NZ_CP012573.1_2522297_2522708_+	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown]	NA|161aa|up_6|NZ_CP012573.1_2522736_2523219_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|83aa|up_5|NZ_CP012573.1_2523259_2523508_-	NA	NA|1242aa|up_4|NZ_CP012573.1_2523507_2527233_-	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|371aa|up_3|NZ_CP012573.1_2528125_2529238_-	COG4748, COG4748, Uncharacterized conserved protein [Function unknown]	NA|198aa|up_2|NZ_CP012573.1_2529370_2529964_-	NA	NA|261aa|up_1|NZ_CP012573.1_2530947_2531730_+	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family	NA|117aa|up_0|NZ_CP012573.1_2532092_2532443_+	pfam11774, Lsr2, Lsr2	NA|258aa|down_0|NZ_CP012573.1_2534247_2535021_+	smart01043, BTAD, Bacterial transcriptional activator domain	NA|691aa|down_1|NZ_CP012573.1_2535067_2537140_-	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]	NA|166aa|down_2|NZ_CP012573.1_2537197_2537695_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|314aa|down_3|NZ_CP012573.1_2538055_2538997_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|233aa|down_4|NZ_CP012573.1_2539297_2539996_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|373aa|down_5|NZ_CP012573.1_2540105_2541224_+	PRK03080, PRK03080, phosphoserine transaminase	NA|198aa|down_6|NZ_CP012573.1_2541296_2541890_-	pfam11228, DUF3027, Protein of unknown function (DUF3027)	NA|128aa|down_7|NZ_CP012573.1_2541882_2542266_-	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|90aa|down_8|NZ_CP012573.1_2542424_2542694_+	NA	NA|547aa|down_9|NZ_CP012573.1_2544610_2546251_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_001280205.1_ASM128020v1	NZ_CP012573	Clavibacter michiganensis subsp. capsici strain PF008 chromosome, complete genome	2	2704607-2704810	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3	Orphan	CGGGCGTCGCGCTCGCGTGCCTCG	24	2	5	2704631-2704651|2704631-2704651|2704631-2704651|2704631-2704651|2704721-2704741	NZ_CP012573.1_315320-315340|NZ_CP012573.1_855247-855267|NZ_CP012573.1_2363643-2363663|NZ_CP012573.1_2821608-2821588|NZ_CP012573.1_1005697-1005717	NA	4	4	Orphan	csa3,WYL,DEDDh,cas3	NA|142aa|up_0|NZ_CP012573.1_2703578_2704004_-,NA|162aa|down_3|NZ_CP012573.1_2707660_2708146_-,NA|177aa|down_9|NZ_CP012573.1_2718846_2719377_+	NA|100aa|up_9|NZ_CP012573.1_2695511_2695811_-	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|219aa|up_8|NZ_CP012573.1_2695807_2696464_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|218aa|up_7|NZ_CP012573.1_2696466_2697120_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|103aa|up_6|NZ_CP012573.1_2697128_2697437_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|323aa|up_5|NZ_CP012573.1_2697875_2698844_-	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair]	NA|398aa|up_4|NZ_CP012573.1_2699000_2700194_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|705aa|up_3|NZ_CP012573.1_2700306_2702421_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|up_2|NZ_CP012573.1_2702468_2702939_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|125aa|up_1|NZ_CP012573.1_2702938_2703313_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|142aa|up_0|NZ_CP012573.1_2703578_2704004_-	NA	NA|280aa|down_0|NZ_CP012573.1_2705087_2705927_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|222aa|down_1|NZ_CP012573.1_2705913_2706579_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|283aa|down_2|NZ_CP012573.1_2706623_2707472_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|162aa|down_3|NZ_CP012573.1_2707660_2708146_-	NA	NA|1300aa|down_4|NZ_CP012573.1_2708282_2712182_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1163aa|down_5|NZ_CP012573.1_2712230_2715719_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|223aa|down_6|NZ_CP012573.1_2716025_2716694_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|286aa|down_7|NZ_CP012573.1_2716746_2717604_+	PRK04457, PRK04457, polyamine aminopropyltransferase	NA|395aa|down_8|NZ_CP012573.1_2717651_2718836_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|177aa|down_9|NZ_CP012573.1_2718846_2719377_+	NA
GCF_001280205.1_ASM128020v1	NZ_CP012573	Clavibacter michiganensis subsp. capsici strain PF008 chromosome, complete genome	3	3036188-3036264	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3	Orphan	CGCGTGACCACCTCAGCCGGTCAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3	NA|90aa|up_7|NZ_CP012573.1_3027660_3027930_-,NA	NA|176aa|up_9|NZ_CP012573.1_3025654_3026182_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|461aa|up_8|NZ_CP012573.1_3026195_3027578_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|90aa|up_7|NZ_CP012573.1_3027660_3027930_-	NA	NA|219aa|up_6|NZ_CP012573.1_3027932_3028589_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|295aa|up_5|NZ_CP012573.1_3028970_3029855_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|374aa|up_4|NZ_CP012573.1_3029904_3031026_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|395aa|up_3|NZ_CP012573.1_3031080_3032265_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|516aa|up_2|NZ_CP012573.1_3032292_3033840_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|130aa|up_1|NZ_CP012573.1_3034082_3034472_+	smart00422, HTH_MERR, helix_turn_helix, mercury resistance	NA|542aa|up_0|NZ_CP012573.1_3034557_3036183_+	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]	NA|104aa|down_0|NZ_CP012573.1_3036282_3036594_+	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|460aa|down_1|NZ_CP012573.1_3036716_3038096_-	TIGR00665, DnaB, replicative DNA helicase	NA|151aa|down_2|NZ_CP012573.1_3038549_3039002_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|88aa|down_3|NZ_CP012573.1_3039013_3039277_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|182aa|down_4|NZ_CP012573.1_3039313_3039859_-	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	NA|155aa|down_5|NZ_CP012573.1_3039862_3040327_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|477aa|down_6|NZ_CP012573.1_3040490_3041921_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|765aa|down_7|NZ_CP012573.1_3042014_3044309_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|533aa|down_8|NZ_CP012573.1_3044374_3045973_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|345aa|down_9|NZ_CP012573.1_3046130_3047165_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
