assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001281005.1_ASM128100v1	NZ_CP012554	Citrobacter portucalensis strain P10159 chromosome, complete genome	1	142009-142086	1	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,cas4	Orphan	TGTCGAGTTCGTAGGCCTGATAAGC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,cas4	NA,NA	NA|292aa|up_9|NZ_CP012554.1_120785_121661_+	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein	NA|267aa|up_8|NZ_CP012554.1_121657_122458_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|468aa|up_7|NZ_CP012554.1_129201_130605_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_6|NZ_CP012554.1_130626_131277_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_5|NZ_CP012554.1_131269_133066_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|464aa|up_4|NZ_CP012554.1_133406_134798_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|NZ_CP012554.1_135193_138937_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|513aa|up_2|NZ_CP012554.1_138933_140472_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|NZ_CP012554.1_140468_141179_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|NZ_CP012554.1_141178_141856_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|NZ_CP012554.1_142858_143701_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|152aa|down_1|NZ_CP012554.1_143756_144212_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|304aa|down_2|NZ_CP012554.1_144323_145235_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|NZ_CP012554.1_145325_146339_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|NZ_CP012554.1_146543_147452_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|NZ_CP012554.1_147588_148002_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|NZ_CP012554.1_148612_149230_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|NZ_CP012554.1_149466_152145_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|NZ_CP012554.1_152631_153279_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|544aa|down_9|NZ_CP012554.1_154050_155682_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional
GCF_001281005.1_ASM128100v1	NZ_CP012554	Citrobacter portucalensis strain P10159 chromosome, complete genome	2	1219185-1219265	2	CRISPRCasFinder	no	DinG	DinG,WYL,cas3,DEDDh,csa3,cas4	Type IV-A	TACGCTTATCAGGCCTACAAAACG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,cas4	NA,NA	NA|254aa|up_9|NZ_CP012554.1_1211312_1212074_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|414aa|up_8|NZ_CP012554.1_1212070_1213312_+	PRK11263, PRK11263, cardiolipin synthase ClsB	NA|321aa|up_7|NZ_CP012554.1_1213311_1214274_+	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|235aa|up_6|NZ_CP012554.1_1214346_1215051_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|151aa|up_5|NZ_CP012554.1_1215092_1215545_-	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|82aa|up_4|NZ_CP012554.1_1215546_1215792_-	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|162aa|up_3|NZ_CP012554.1_1215784_1216270_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|171aa|up_2|NZ_CP012554.1_1216272_1216785_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|330aa|up_1|NZ_CP012554.1_1216804_1217794_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_0|NZ_CP012554.1_1218256_1219165_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|down_0|NZ_CP012554.1_1219343_1221365_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|241aa|down_1|NZ_CP012554.1_1222133_1222856_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|233aa|down_2|NZ_CP012554.1_1222821_1223520_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|down_3|NZ_CP012554.1_1223512_1224268_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|386aa|down_4|NZ_CP012554.1_1224251_1225409_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|down_5|NZ_CP012554.1_1225405_1226446_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|456aa|down_6|NZ_CP012554.1_1226444_1227812_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|down_7|NZ_CP012554.1_1227869_1228346_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|507aa|down_8|NZ_CP012554.1_1228441_1229962_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|562aa|down_9|NZ_CP012554.1_1229963_1231649_-	PRK05414, PRK05414, urocanate hydratase; Provisional
GCF_001281005.1_ASM128100v1	NZ_CP012554	Citrobacter portucalensis strain P10159 chromosome, complete genome	3	2089045-2089157	3	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,cas4	Orphan	CCTGATGCGCTTTGCTTATCAGGCCTACG	29	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,cas4	NA,NA	NA|410aa|up_9|NZ_CP012554.1_2076182_2077412_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|up_8|NZ_CP012554.1_2077500_2078883_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|323aa|up_7|NZ_CP012554.1_2078966_2079935_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|214aa|up_6|NZ_CP012554.1_2080050_2080692_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|240aa|up_5|NZ_CP012554.1_2081895_2082615_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|up_4|NZ_CP012554.1_2082819_2084043_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|up_3|NZ_CP012554.1_2084094_2085417_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|266aa|up_2|NZ_CP012554.1_2085552_2086350_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|517aa|up_1|NZ_CP012554.1_2086593_2088144_+	PRK10977, PRK10977, hypothetical protein; Provisional	NA|288aa|up_0|NZ_CP012554.1_2088115_2088979_+	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|259aa|down_0|NZ_CP012554.1_2089193_2089970_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_1|NZ_CP012554.1_2089966_2091040_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_2|NZ_CP012554.1_2091160_2091322_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|206aa|down_3|NZ_CP012554.1_2091449_2092067_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_4|NZ_CP012554.1_2092375_2093965_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|227aa|down_5|NZ_CP012554.1_2094057_2094738_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|down_6|NZ_CP012554.1_2094752_2095199_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|down_7|NZ_CP012554.1_2095167_2095581_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|down_8|NZ_CP012554.1_2095684_2096716_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_9|NZ_CP012554.1_2097178_2097415_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)
GCF_001281005.1_ASM128100v1	NZ_CP012554	Citrobacter portucalensis strain P10159 chromosome, complete genome	4	2594420-2594536	4	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,cas4	Orphan	TGTCTGTTATAGCGTGATGTTTTGCCTGATGGCGCTTCGC	40	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,cas4	NA,NA	NA|669aa|up_9|NZ_CP012554.1_2581277_2583284_-	PRK13561, PRK13561, putative diguanylate cyclase; Provisional	NA|36aa|up_8|NZ_CP012554.1_2583510_2583618_-	pfam13940, Ldr_toxin, Toxin Ldr, type I toxin-antitoxin system	NA|399aa|up_7|NZ_CP012554.1_2584043_2585240_+	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis	NA|433aa|up_6|NZ_CP012554.1_2585357_2586656_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|401aa|up_5|NZ_CP012554.1_2586691_2587894_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|335aa|up_4|NZ_CP012554.1_2588070_2589075_-	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|328aa|up_3|NZ_CP012554.1_2589071_2590055_-	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional	NA|301aa|up_2|NZ_CP012554.1_2590065_2590968_-	PRK10913, PRK10913, dipeptide ABC transporter permease DppC	NA|340aa|up_1|NZ_CP012554.1_2590977_2591997_-	PRK10914, PRK10914, dipeptide ABC transporter permease DppB	NA|536aa|up_0|NZ_CP012554.1_2592163_2593771_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|565aa|down_0|NZ_CP012554.1_2594766_2596461_-	PRK11560, PRK11560, kdo(2)-lipid A phosphoethanolamine 7''-transferase	NA|401aa|down_1|NZ_CP012554.1_2596671_2597874_-	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter	NA|234aa|down_2|NZ_CP012554.1_2598125_2598827_-	COG5571, COG5571, Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion [Cell motility and secretion]	NA|190aa|down_3|NZ_CP012554.1_2598986_2599556_+	PRK10353, PRK10353, DNA-3-methyladenine glycosylase I	NA|147aa|down_4|NZ_CP012554.1_2599545_2599986_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|778aa|down_5|NZ_CP012554.1_2599954_2602288_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|221aa|down_6|NZ_CP012554.1_2602447_2603110_+	PRK10510, PRK10510, OmpA family lipoprotein	NA|339aa|down_7|NZ_CP012554.1_2603214_2604231_+	cd06283, PBP1_RegR_EndR_KdgR-like, ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR	NA|250aa|down_8|NZ_CP012554.1_2604330_2605080_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|313aa|down_9|NZ_CP012554.1_2605083_2606022_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)
GCF_001281005.1_ASM128100v1	NZ_CP012554	Citrobacter portucalensis strain P10159 chromosome, complete genome	5	3191780-3191900	5	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,cas4	Orphan	GCCTGATGCGCTACGCTTATCAGGCCTACAAGA	33	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,cas4	NA,NA	NA|398aa|up_9|NZ_CP012554.1_3178302_3179496_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|238aa|up_8|NZ_CP012554.1_3179680_3180394_+	PRK11009, aphA, class B acid phosphatase	NA|941aa|up_7|NZ_CP012554.1_3181052_3183875_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|175aa|up_6|NZ_CP012554.1_3184126_3184651_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|94aa|up_5|NZ_CP012554.1_3184717_3184999_-	pfam15940, YjcB, Family of unknown function	NA|529aa|up_4|NZ_CP012554.1_3185551_3187138_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|108aa|up_3|NZ_CP012554.1_3187140_3187464_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|153aa|up_2|NZ_CP012554.1_3187550_3188009_+	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|450aa|up_1|NZ_CP012554.1_3188617_3189967_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|549aa|up_0|NZ_CP012554.1_3190124_3191771_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|164aa|down_0|NZ_CP012554.1_3191993_3192485_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|297aa|down_1|NZ_CP012554.1_3192560_3193451_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|137aa|down_2|NZ_CP012554.1_3193552_3193963_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|down_3|NZ_CP012554.1_3193955_3194645_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|550aa|down_4|NZ_CP012554.1_3194690_3196340_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|down_5|NZ_CP012554.1_3196336_3196651_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_6|NZ_CP012554.1_3196894_3198853_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|479aa|down_7|NZ_CP012554.1_3199287_3200724_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_8|NZ_CP012554.1_3200768_3201335_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_9|NZ_CP012554.1_3201331_3202003_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein
GCF_001281005.1_ASM128100v1	NZ_CP012554	Citrobacter portucalensis strain P10159 chromosome, complete genome	6	4409983-4410059	6	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,cas4	Orphan	CTGACGTCTTATCCGGCCTACGTGTG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,cas4	NA,NA|341aa|down_9|NZ_CP012554.1_4422020_4423043_-	NA|672aa|up_9|NZ_CP012554.1_4399769_4401785_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|73aa|up_8|NZ_CP012554.1_4401786_4402005_+	COG3530, COG3530, Uncharacterized protein conserved in bacteria [Function unknown]	NA|333aa|up_7|NZ_CP012554.1_4402001_4403000_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|309aa|up_6|NZ_CP012554.1_4403089_4404016_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|364aa|up_5|NZ_CP012554.1_4404443_4405535_+	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|132aa|up_4|NZ_CP012554.1_4405612_4406008_+	cd14797, DUF302, Uncharacterized domain family DUF302	NA|90aa|up_3|NZ_CP012554.1_4406238_4406508_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|278aa|up_2|NZ_CP012554.1_4406833_4407667_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|419aa|up_1|NZ_CP012554.1_4407723_4408980_+	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|295aa|up_0|NZ_CP012554.1_4409078_4409963_+	PRK09986, PRK09986, LysR family transcriptional regulator	NA|472aa|down_0|NZ_CP012554.1_4410700_4412116_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|131aa|down_1|NZ_CP012554.1_4412172_4412565_-	pfam07037, DUF1323, Putative transcription regulator (DUF1323)	NA|121aa|down_2|NZ_CP012554.1_4412566_4412929_-	pfam07037, DUF1323, Putative transcription regulator (DUF1323)	NA|401aa|down_3|NZ_CP012554.1_4413483_4414686_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|413aa|down_4|NZ_CP012554.1_4415030_4416269_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|109aa|down_5|NZ_CP012554.1_4416301_4416628_-	pfam10697, DUF2502, Protein of unknown function (DUF2502)	NA|330aa|down_6|NZ_CP012554.1_4416765_4417755_-	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein	NA|551aa|down_7|NZ_CP012554.1_4417937_4419590_+	TIGR03393, Indole-3-pyruvate_decarboxylase, indolepyruvate decarboxylase, Erwinia family	NA|322aa|down_8|NZ_CP012554.1_4421028_4421994_+	PRK00292, glk, glucokinase; Provisional	NA|341aa|down_9|NZ_CP012554.1_4422020_4423043_-	NA
