assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001281545.1_ASM128154v1	NZ_CP012674	Proteus mirabilis strain CYPM1 chromosome, complete genome	1	1153535-1153688	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTTTAATCAATTGGTCGGGCGTTCGAGTCGCCCACGACCCACCATTT	47	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|111aa|down_8|NZ_CP012674.1_1168075_1168408_+,NA|80aa|down_9|NZ_CP012674.1_1168573_1168813_+	NA|298aa|up_9|NZ_CP012674.1_1144900_1145794_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|457aa|up_8|NZ_CP012674.1_1145884_1147255_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|136aa|up_7|NZ_CP012674.1_1147244_1147652_+	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown]	NA|132aa|up_6|NZ_CP012674.1_1147961_1148357_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|229aa|up_5|NZ_CP012674.1_1148356_1149043_+	PRK10801, PRK10801, Tol-Pal system protein TolQ	NA|142aa|up_4|NZ_CP012674.1_1149065_1149491_+	PRK11024, PRK11024, colicin uptake protein TolR; Provisional	NA|356aa|up_3|NZ_CP012674.1_1149518_1150586_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|432aa|up_2|NZ_CP012674.1_1150728_1152024_+	PRK03629, tolB, Tol-Pal system protein TolB	NA|166aa|up_1|NZ_CP012674.1_1152069_1152567_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|258aa|up_0|NZ_CP012674.1_1152576_1153350_+	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional	NA|297aa|down_0|NZ_CP012674.1_1153840_1154731_-	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase	NA|243aa|down_1|NZ_CP012674.1_1154970_1155699_+	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional	NA|353aa|down_2|NZ_CP012674.1_1155942_1157001_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|251aa|down_3|NZ_CP012674.1_1157073_1157826_-	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|489aa|down_4|NZ_CP012674.1_1158176_1159643_-	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|520aa|down_5|NZ_CP012674.1_1159818_1161378_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|1789aa|down_6|NZ_CP012674.1_1161392_1166759_+	pfam04830, DUF637, Possible hemagglutinin (DUF637)	NA|169aa|down_7|NZ_CP012674.1_1166762_1167269_+	cd13445, CDI_inhibitor_EC869_like, Inhibitor of the contact-dependent growth inhibition (CDI) system of Escherichia coli EC869, and related proteins	NA|111aa|down_8|NZ_CP012674.1_1168075_1168408_+	NA	NA|80aa|down_9|NZ_CP012674.1_1168573_1168813_+	NA
GCF_001281545.1_ASM128154v1	NZ_CP012674	Proteus mirabilis strain CYPM1 chromosome, complete genome	2	2300775-2300930	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|115aa|down_2|NZ_CP012674.1_2303503_2303848_-,NA|271aa|down_4|NZ_CP012674.1_2304539_2305352_-,NA|107aa|down_5|NZ_CP012674.1_2305320_2305641_-,NA|163aa|down_6|NZ_CP012674.1_2305653_2306142_-,NA|153aa|down_8|NZ_CP012674.1_2308530_2308989_-,NA|151aa|down_9|NZ_CP012674.1_2309048_2309501_-	NA|221aa|up_9|NZ_CP012674.1_2288183_2288846_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|187aa|up_8|NZ_CP012674.1_2288930_2289491_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_7|NZ_CP012674.1_2289553_2290411_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_6|NZ_CP012674.1_2290597_2291176_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|419aa|up_5|NZ_CP012674.1_2293493_2294750_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP012674.1_2295102_2297541_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP012674.1_2297552_2298170_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP012674.1_2298173_2298950_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP012674.1_2299065_2299608_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP012674.1_2300176_2300356_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP012674.1_2301670_2302327_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP012674.1_2302323_2303511_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP012674.1_2303503_2303848_-	NA	NA|231aa|down_3|NZ_CP012674.1_2303844_2304537_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP012674.1_2304539_2305352_-	NA	NA|107aa|down_5|NZ_CP012674.1_2305320_2305641_-	NA	NA|163aa|down_6|NZ_CP012674.1_2305653_2306142_-	NA	NA|768aa|down_7|NZ_CP012674.1_2306144_2308448_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|153aa|down_8|NZ_CP012674.1_2308530_2308989_-	NA	NA|151aa|down_9|NZ_CP012674.1_2309048_2309501_-	NA
GCF_001281545.1_ASM128154v1	NZ_CP012674	Proteus mirabilis strain CYPM1 chromosome, complete genome	3	2377415-2377688	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC,ATCCCCGTATACACGGGGAACAC,CGGTTCATCCCCGTATACACGGGGAACAC	29,23,29	0	0	NA	NA	I-E:NA:I-E	4,4,3	4	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|194aa|up_9|NZ_CP012674.1_2364650_2365232_+	PRK03826, PRK03826, 5'-nucleotidase; Provisional	NA|610aa|up_8|NZ_CP012674.1_2365293_2367123_-	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]	NA|221aa|up_7|NZ_CP012674.1_2367232_2367895_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_6|NZ_CP012674.1_2367929_2368424_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_5|NZ_CP012674.1_2368564_2369020_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_4|NZ_CP012674.1_2369411_2370614_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_3|NZ_CP012674.1_2370691_2372836_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_2|NZ_CP012674.1_2373171_2373315_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP012674.1_2373545_2375945_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP012674.1_2376022_2377246_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP012674.1_2377746_2378043_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP012674.1_2378045_2378966_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP012674.1_2378966_2379644_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP012674.1_2379643_2380381_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_4|NZ_CP012674.1_2380393_2381428_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP012674.1_2381485_2382073_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP012674.1_2382059_2383658_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|419aa|down_7|NZ_CP012674.1_2387360_2388617_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_8|NZ_CP012674.1_2388627_2388915_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_9|NZ_CP012674.1_2388944_2389388_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit
GCF_001281545.1_ASM128154v1	NZ_CP012674	Proteus mirabilis strain CYPM1 chromosome, complete genome	4	2386591-2387230	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|48aa|up_9|NZ_CP012674.1_2373171_2373315_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_8|NZ_CP012674.1_2373545_2375945_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_7|NZ_CP012674.1_2376022_2377246_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_6|NZ_CP012674.1_2377746_2378043_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_5|NZ_CP012674.1_2378045_2378966_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_4|NZ_CP012674.1_2378966_2379644_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_3|NZ_CP012674.1_2379643_2380381_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|up_2|NZ_CP012674.1_2380393_2381428_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_1|NZ_CP012674.1_2381485_2382073_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_0|NZ_CP012674.1_2382059_2383658_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|419aa|down_0|NZ_CP012674.1_2387360_2388617_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP012674.1_2388627_2388915_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP012674.1_2388944_2389388_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP012674.1_2389614_2390661_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP012674.1_2390657_2391200_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP012674.1_2391396_2392011_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP012674.1_2392075_2392981_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP012674.1_2393000_2393582_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP012674.1_2393703_2395221_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP012674.1_2395251_2395743_-	PRK10845, PRK10845, colicin V production protein; Provisional
GCF_001281545.1_ASM128154v1	NZ_CP012674	Proteus mirabilis strain CYPM1 chromosome, complete genome	5	2631147-2631289	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|74aa|up_7|NZ_CP012674.1_2621820_2622042_+,NA|143aa|up_6|NZ_CP012674.1_2622109_2622538_+,NA|49aa|up_0|NZ_CP012674.1_2629087_2629234_+,NA	NA|219aa|up_9|NZ_CP012674.1_2619901_2620558_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|300aa|up_8|NZ_CP012674.1_2620718_2621618_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_7|NZ_CP012674.1_2621820_2622042_+	NA	NA|143aa|up_6|NZ_CP012674.1_2622109_2622538_+	NA	NA|245aa|up_5|NZ_CP012674.1_2622705_2623440_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_4|NZ_CP012674.1_2623530_2624154_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_3|NZ_CP012674.1_2624322_2625183_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_2|NZ_CP012674.1_2625274_2625646_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_1|NZ_CP012674.1_2625816_2628414_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_0|NZ_CP012674.1_2629087_2629234_+	NA	NA|476aa|down_0|NZ_CP012674.1_2643681_2645109_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|622aa|down_1|NZ_CP012674.1_2645310_2647176_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP012674.1_2647188_2649855_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|257aa|down_3|NZ_CP012674.1_2650018_2650789_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP012674.1_2651115_2651658_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP012674.1_2651868_2652312_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP012674.1_2652411_2653515_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP012674.1_2653511_2654711_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP012674.1_2654988_2655603_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|72aa|down_9|NZ_CP012674.1_2656409_2656625_+	PRK00418, PRK00418, DNA gyrase inhibitor YacG
