assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	1	1231636-1231738	1	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Orphan	CTCTTAGAACGATCAAGATTTTGATATGAAATTAAAAAA	39	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|81aa|up_1|NZ_CP012603.1_1230141_1230384_-,NA	NA|257aa|up_9|NZ_CP012603.1_1219703_1220474_-	pfam13482, RNase_H_2, RNase_H superfamily	NA|577aa|up_8|NZ_CP012603.1_1220473_1222204_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|345aa|up_7|NZ_CP012603.1_1222210_1223245_-	pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein	NA|340aa|up_6|NZ_CP012603.1_1223331_1224351_+	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|301aa|up_5|NZ_CP012603.1_1225687_1226590_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|240aa|up_4|NZ_CP012603.1_1226567_1227287_-	cd06561, AlkD_like, A new structural DNA glycosylase	NA|567aa|up_3|NZ_CP012603.1_1227426_1229127_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|222aa|up_2|NZ_CP012603.1_1229297_1229963_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|81aa|up_1|NZ_CP012603.1_1230141_1230384_-	NA	NA|144aa|up_0|NZ_CP012603.1_1230483_1230915_+	pfam13671, AAA_33, AAA domain	NA|390aa|down_0|NZ_CP012603.1_1232114_1233284_+	pfam07614, DUF1577, Protein of unknown function (DUF1577)	NA|258aa|down_1|NZ_CP012603.1_1233742_1234516_+	cd16325, LolA, LolA, a periplasmic chaperone	NA|372aa|down_2|NZ_CP012603.1_1234537_1235653_+	pfam13413, HTH_25, Helix-turn-helix domain	NA|438aa|down_3|NZ_CP012603.1_1235661_1236975_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|249aa|down_4|NZ_CP012603.1_1236971_1237718_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|337aa|down_5|NZ_CP012603.1_1237692_1238703_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|109aa|down_6|NZ_CP012603.1_1238758_1239085_+	pfam02699, YajC, Preprotein translocase subunit	NA|249aa|down_7|NZ_CP012603.1_1239081_1239828_+	TIGR04420, Sec_Non_Glob, Sec region non-globular protein	NA|643aa|down_8|NZ_CP012603.1_1239838_1241767_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|313aa|down_9|NZ_CP012603.1_1241771_1242710_+	PRK13022, secF, protein translocase subunit SecF
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	2	2471280-2471379	2	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Orphan	TTAGTGGTAGTTCTCACATTTTAG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|103aa|up_3|NZ_CP012603.1_2466188_2466497_-,NA|227aa|up_2|NZ_CP012603.1_2466787_2467468_+,NA|65aa|down_2|NZ_CP012603.1_2477181_2477376_+,NA|145aa|down_9|NZ_CP012603.1_2487585_2488020_+	NA|348aa|up_9|NZ_CP012603.1_2456676_2457720_+	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|113aa|up_8|NZ_CP012603.1_2458137_2458476_+	COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only]	NA|915aa|up_7|NZ_CP012603.1_2458549_2461294_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|551aa|up_6|NZ_CP012603.1_2461300_2462953_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|110aa|up_5|NZ_CP012603.1_2463044_2463374_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|939aa|up_4|NZ_CP012603.1_2463357_2466174_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|103aa|up_3|NZ_CP012603.1_2466188_2466497_-	NA	NA|227aa|up_2|NZ_CP012603.1_2466787_2467468_+	NA	NA|179aa|up_1|NZ_CP012603.1_2467470_2468007_+	PRK12846, PRK12846, peptide deformylase; Reviewed	NA|1081aa|up_0|NZ_CP012603.1_2468026_2471269_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|361aa|down_0|NZ_CP012603.1_2471384_2472467_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|358aa|down_1|NZ_CP012603.1_2476036_2477110_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|65aa|down_2|NZ_CP012603.1_2477181_2477376_+	NA	NA|739aa|down_3|NZ_CP012603.1_2477707_2479924_-	PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	NA|324aa|down_4|NZ_CP012603.1_2480821_2481793_-	TIGR04327, hypothetical_protein_LlicsVM_10020, outer membrane protein, LA_2444/LA_4059 family	NA|527aa|down_5|NZ_CP012603.1_2482280_2483861_-	PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	NA|429aa|down_6|NZ_CP012603.1_2483931_2485218_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|282aa|down_7|NZ_CP012603.1_2485427_2486273_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|313aa|down_8|NZ_CP012603.1_2486626_2487565_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|145aa|down_9|NZ_CP012603.1_2487585_2488020_+	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	3	2748173-2748268	3	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Orphan	AGGAAAGCGTTGTGTTGAGTTTTCC	25	1	7	2748198-2748243|2748198-2748243|2748198-2748243|2748198-2748243|2748198-2748243|2748198-2748243|2748198-2748243	NZ_CP012603.1_979493-979448|NZ_CP012603.1_2720772-2720727|NZ_CP012603.1_2841662-2841707|NZ_CP012603.1_2841733-2841778|NZ_CP012603.1_3566067-3566022|NZ_CP012603.1_4126490-4126535|NZ_CP012603.1_4126560-4126605	NA	1	1	Orphan	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|769aa|up_6|NZ_CP012603.1_2739883_2742190_-,NA|141aa|up_5|NZ_CP012603.1_2743190_2743613_-,NA|90aa|up_3|NZ_CP012603.1_2744868_2745138_+,NA|178aa|down_0|NZ_CP012603.1_2748816_2749350_-,NA|370aa|down_6|NZ_CP012603.1_2756610_2757720_-,NA|273aa|down_9|NZ_CP012603.1_2759542_2760361_+	NA|374aa|up_9|NZ_CP012603.1_2735555_2736677_-	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|370aa|up_8|NZ_CP012603.1_2737095_2738205_-	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|382aa|up_7|NZ_CP012603.1_2738741_2739887_-	pfam04286, DUF445, Protein of unknown function (DUF445)	NA|769aa|up_6|NZ_CP012603.1_2739883_2742190_-	NA	NA|141aa|up_5|NZ_CP012603.1_2743190_2743613_-	NA	NA|320aa|up_4|NZ_CP012603.1_2743722_2744682_-	pfam04909, Amidohydro_2, Amidohydrolase	NA|90aa|up_3|NZ_CP012603.1_2744868_2745138_+	NA	NA|304aa|up_2|NZ_CP012603.1_2745575_2746487_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|101aa|up_1|NZ_CP012603.1_2746571_2746874_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|140aa|up_0|NZ_CP012603.1_2747206_2747626_+	pfam02082, Rrf2, Transcriptional regulator	NA|178aa|down_0|NZ_CP012603.1_2748816_2749350_-	NA	NA|126aa|down_1|NZ_CP012603.1_2749510_2749888_-	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]	NA|571aa|down_2|NZ_CP012603.1_2751060_2752773_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|167aa|down_3|NZ_CP012603.1_2753476_2753977_-	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|488aa|down_4|NZ_CP012603.1_2753973_2755437_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|266aa|down_5|NZ_CP012603.1_2755433_2756231_-	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]	NA|370aa|down_6|NZ_CP012603.1_2756610_2757720_-	NA	NA|294aa|down_7|NZ_CP012603.1_2757864_2758746_+	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225)	NA|266aa|down_8|NZ_CP012603.1_2758742_2759540_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|273aa|down_9|NZ_CP012603.1_2759542_2760361_+	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	4	2764198-2764364	4	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Orphan	TCCCATTTTAATTCATTATGTTTTTTGAAAGTTTTTCAATTATTAAAAAATTGTA	55	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|370aa|up_6|NZ_CP012603.1_2756610_2757720_-,NA|273aa|up_3|NZ_CP012603.1_2759542_2760361_+,NA|430aa|up_2|NZ_CP012603.1_2760357_2761647_+,NA|81aa|up_0|NZ_CP012603.1_2763604_2763847_+,NA|248aa|down_4|NZ_CP012603.1_2769990_2770734_+,NA|261aa|down_5|NZ_CP012603.1_2771120_2771903_-	NA|167aa|up_9|NZ_CP012603.1_2753476_2753977_-	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|488aa|up_8|NZ_CP012603.1_2753973_2755437_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|266aa|up_7|NZ_CP012603.1_2755433_2756231_-	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]	NA|370aa|up_6|NZ_CP012603.1_2756610_2757720_-	NA	NA|294aa|up_5|NZ_CP012603.1_2757864_2758746_+	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225)	NA|266aa|up_4|NZ_CP012603.1_2758742_2759540_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|273aa|up_3|NZ_CP012603.1_2759542_2760361_+	NA	NA|430aa|up_2|NZ_CP012603.1_2760357_2761647_+	NA	NA|358aa|up_1|NZ_CP012603.1_2762459_2763533_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|81aa|up_0|NZ_CP012603.1_2763604_2763847_+	NA	NA|610aa|down_0|NZ_CP012603.1_2764946_2766776_+	pfam13372, Alginate_exp, Alginate export	NA|335aa|down_1|NZ_CP012603.1_2766804_2767809_+	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|137aa|down_2|NZ_CP012603.1_2768926_2769337_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|76aa|down_3|NZ_CP012603.1_2769464_2769692_+	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain	NA|248aa|down_4|NZ_CP012603.1_2769990_2770734_+	NA	NA|261aa|down_5|NZ_CP012603.1_2771120_2771903_-	NA	NA|502aa|down_6|NZ_CP012603.1_2772338_2773844_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|648aa|down_7|NZ_CP012603.1_2773830_2775774_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|171aa|down_8|NZ_CP012603.1_2775775_2776288_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|366aa|down_9|NZ_CP012603.1_2776284_2777382_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	5	3284965-3285794	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36,36,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	10,11,11	11	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|70aa|up_9|NZ_CP012603.1_3276551_3276761_-,NA|184aa|up_7|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_6|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_5|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_0|NZ_CP012603.1_3284718_3284922_-,NA|78aa|down_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_7|NZ_CP012603.1_3297516_3297702_-	NA|70aa|up_9|NZ_CP012603.1_3276551_3276761_-	NA	NA|358aa|up_8|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_7|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_6|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_5|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_4|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_3|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_2|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_1|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_0|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|down_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_1|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_2|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_3|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_4|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_5|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_6|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_7|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_8|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_9|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	6	3285950-3286130	6	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	2	2	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|70aa|up_9|NZ_CP012603.1_3276551_3276761_-,NA|184aa|up_7|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_6|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_5|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_0|NZ_CP012603.1_3284718_3284922_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|70aa|up_9|NZ_CP012603.1_3276551_3276761_-	NA	NA|358aa|up_8|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_7|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_6|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_5|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_4|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_3|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_2|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_1|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_0|NZ_CP012603.1_3284718_3284922_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	7	3286288-3286395	7	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	1	1	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	8	3286550-3286657	8	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	1	1	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	9	3286814-3286921	9	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	1	1	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	10	3287078-3287401	10,2	CRISPRCasFinder,PILER-CR	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACAC	36,38	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B	4,2	4	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	11	3287559-3287666	11	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	1	1	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	12	3287778-3287888	12	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	1	1	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	13	3288045-3288152	13	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	1	1	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	14	3288309-3288629	14,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36,36,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	4,4,2	4	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	15	3288787-3289111	15,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC,CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36,36,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	4,4,2	4	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	16	3289268-3289447	16	CRISPRCasFinder	no	cas6,cas1,cas2,cas3,cas8b3,cas7,cas5	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Unclear	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	36	0	0	NA	NA	I-A,I-B,II-B	2	2	Unclear	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+,NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+,NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-,NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-,NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-,NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-,NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA|358aa|up_9|NZ_CP012603.1_3276973_3278047_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|184aa|up_8|NZ_CP012603.1_3278654_3279206_+	NA	NA|129aa|up_7|NZ_CP012603.1_3279548_3279935_+	NA	NA|71aa|up_6|NZ_CP012603.1_3280118_3280331_-	NA	NA|292aa|up_5|NZ_CP012603.1_3280592_3281468_+	pfam14284, PcfJ, PcfJ-like protein	cas6|70aa|up_4|NZ_CP012603.1_3282000_3282210_+	pfam09559, Cas6, Cas6 Crispr	cas1|542aa|up_3|NZ_CP012603.1_3282688_3284314_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|95aa|up_2|NZ_CP012603.1_3284313_3284598_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|68aa|up_1|NZ_CP012603.1_3284718_3284922_-	NA	NA|78aa|up_0|NZ_CP012603.1_3285809_3286043_-	NA	NA|132aa|down_0|NZ_CP012603.1_3289628_3290024_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas6|211aa|down_1|NZ_CP012603.1_3290304_3290937_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas3|753aa|down_2|NZ_CP012603.1_3290933_3293192_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas8b3|628aa|down_3|NZ_CP012603.1_3293193_3295077_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|280aa|down_4|NZ_CP012603.1_3295141_3295981_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|208aa|down_5|NZ_CP012603.1_3296001_3296625_+	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	NA|62aa|down_6|NZ_CP012603.1_3297516_3297702_-	NA	NA|358aa|down_7|NZ_CP012603.1_3299090_3300164_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|143aa|down_8|NZ_CP012603.1_3300465_3300894_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|61aa|down_9|NZ_CP012603.1_3300886_3301069_-	NA
GCF_001293065.1_ASM129306v1	NZ_CP012603	Leptospira interrogans serovar Hardjo str. Norma isolate Cattle chromosome I, complete sequence	17	3754758-3754872	17	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	Orphan	AATAGAGTAGTTGAAAAATAAATTCTCC	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,RT,DEDDh,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	NA|82aa|up_4|NZ_CP012603.1_3750361_3750607_-,NA	NA|250aa|up_9|NZ_CP012603.1_3743985_3744735_-	pfam08478, POTRA_1, POTRA domain, FtsQ-type	NA|267aa|up_8|NZ_CP012603.1_3745417_3746218_+	pfam02470, MlaD, MlaD protein	NA|177aa|up_7|NZ_CP012603.1_3746892_3747423_-	cd10542, SET_SUV39H, SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homologs, SUV39H1, SUV39H2 and similar proteins	NA|278aa|up_6|NZ_CP012603.1_3748278_3749112_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|419aa|up_5|NZ_CP012603.1_3749108_3750365_-	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]	NA|82aa|up_4|NZ_CP012603.1_3750361_3750607_-	NA	NA|198aa|up_3|NZ_CP012603.1_3751098_3751692_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|224aa|up_2|NZ_CP012603.1_3751751_3752423_-	TIGR02938, Nitrogen_fixation_regulatory_protein, nitrogen fixation negative regulator NifL	NA|152aa|up_1|NZ_CP012603.1_3752720_3753176_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|209aa|up_0|NZ_CP012603.1_3754064_3754691_+	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases	NA|740aa|down_0|NZ_CP012603.1_3755472_3757692_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|67aa|down_1|NZ_CP012603.1_3757688_3757889_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|98aa|down_2|NZ_CP012603.1_3757906_3758200_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|314aa|down_3|NZ_CP012603.1_3758572_3759514_-	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|45aa|down_4|NZ_CP012603.1_3759825_3759960_-	pfam07599, DUF1563, Protein of unknown function (DUF1563)	NA|633aa|down_5|NZ_CP012603.1_3760179_3762078_-	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|83aa|down_6|NZ_CP012603.1_3762259_3762508_-	pfam07599, DUF1563, Protein of unknown function (DUF1563)	NA|307aa|down_7|NZ_CP012603.1_3764016_3764937_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|358aa|down_8|NZ_CP012603.1_3765468_3766542_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|1039aa|down_9|NZ_CP012603.1_3767413_3770530_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]
