assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001293125.1_ASM129312v1	NZ_CP009312	Lawsonella clevelandensis strain X1036 chromosome, complete genome	1	964662-964741	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	Orphan	AGTCCGCGGCTAAACCAGTGGGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	NA|415aa|up_9|NZ_CP009312.1_952041_953286_-,NA|134aa|up_7|NZ_CP009312.1_955423_955825_+,NA|51aa|up_5|NZ_CP009312.1_957022_957175_-,NA|398aa|up_1|NZ_CP009312.1_962601_963795_-,NA|247aa|down_0|NZ_CP009312.1_965086_965827_+,NA|328aa|down_2|NZ_CP009312.1_967848_968832_-,NA|88aa|down_4|NZ_CP009312.1_970325_970589_-,NA|135aa|down_5|NZ_CP009312.1_970648_971053_-,NA|869aa|down_9|NZ_CP009312.1_974856_977463_+	NA|415aa|up_9|NZ_CP009312.1_952041_953286_-	NA	NA|462aa|up_8|NZ_CP009312.1_953699_955085_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|134aa|up_7|NZ_CP009312.1_955423_955825_+	NA	NA|230aa|up_6|NZ_CP009312.1_955969_956659_-	cd19358, TenA_E_Spr0628-like, TenA_E proteins similar to Streptococcus pneumoniae Spr0628 and Saccharomyces cerevisiae S288C PET18	NA|51aa|up_5|NZ_CP009312.1_957022_957175_-	NA	NA|164aa|up_4|NZ_CP009312.1_957850_958342_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|582aa|up_3|NZ_CP009312.1_958708_960454_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|620aa|up_2|NZ_CP009312.1_960463_962323_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|398aa|up_1|NZ_CP009312.1_962601_963795_-	NA	NA|221aa|up_0|NZ_CP009312.1_963956_964619_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|247aa|down_0|NZ_CP009312.1_965086_965827_+	NA	NA|483aa|down_1|NZ_CP009312.1_966174_967623_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|328aa|down_2|NZ_CP009312.1_967848_968832_-	NA	NA|353aa|down_3|NZ_CP009312.1_969020_970079_+	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|88aa|down_4|NZ_CP009312.1_970325_970589_-	NA	NA|135aa|down_5|NZ_CP009312.1_970648_971053_-	NA	NA|216aa|down_6|NZ_CP009312.1_971150_971798_-	PRK00228, PRK00228, YqgE/AlgH family protein	NA|511aa|down_7|NZ_CP009312.1_971794_973327_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|299aa|down_8|NZ_CP009312.1_973922_974819_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|869aa|down_9|NZ_CP009312.1_974856_977463_+	NA
GCF_001293125.1_ASM129312v1	NZ_CP009312	Lawsonella clevelandensis strain X1036 chromosome, complete genome	2	1010205-1011452	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	Type I-E	GGCTCATCCCCGCTGGCGCGGGGCACAT,GGCTCATCCCCGCTGGCGCGGGGCACAT,GGCTCATCCCCGCTGGCGCGGGGCACAT	28,28,28	0	0	NA	NA	I-E:I-E:I-E	20,20,20	20	TypeI-E	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	NA|58aa|up_4|NZ_CP009312.1_1007698_1007872_-,NA|141aa|up_1|NZ_CP009312.1_1009469_1009892_-,NA|48aa|up_0|NZ_CP009312.1_1009948_1010092_-,NA|175aa|down_8|NZ_CP009312.1_1020782_1021307_-	NA|479aa|up_9|NZ_CP009312.1_995980_997417_+	PRK00064, recF, recombination protein F; Reviewed	NA|210aa|up_8|NZ_CP009312.1_997413_998043_+	PRK03195, PRK03195, DUF721 family protein	NA|680aa|up_7|NZ_CP009312.1_998385_1000425_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|828aa|up_6|NZ_CP009312.1_1000446_1002930_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|944aa|up_5|NZ_CP009312.1_1003443_1006275_-	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|58aa|up_4|NZ_CP009312.1_1007698_1007872_-	NA	NA|176aa|up_3|NZ_CP009312.1_1007970_1008498_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|265aa|up_2|NZ_CP009312.1_1008526_1009321_+	pfam01694, Rhomboid, Rhomboid family	NA|141aa|up_1|NZ_CP009312.1_1009469_1009892_-	NA	NA|48aa|up_0|NZ_CP009312.1_1009948_1010092_-	NA	cas2|113aa|down_0|NZ_CP009312.1_1011534_1011873_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|312aa|down_1|NZ_CP009312.1_1011869_1012805_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|223aa|down_2|NZ_CP009312.1_1012807_1013476_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|237aa|down_3|NZ_CP009312.1_1013472_1014183_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|381aa|down_4|NZ_CP009312.1_1014187_1015330_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|212aa|down_5|NZ_CP009312.1_1015351_1015987_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|564aa|down_6|NZ_CP009312.1_1015986_1017678_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|947aa|down_7|NZ_CP009312.1_1017674_1020515_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|175aa|down_8|NZ_CP009312.1_1020782_1021307_-	NA	NA|88aa|down_9|NZ_CP009312.1_1021650_1021914_-	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed
GCF_001293125.1_ASM129312v1	NZ_CP009312	Lawsonella clevelandensis strain X1036 chromosome, complete genome	3	1505271-1505413	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	Orphan	TGGCCGCCGCACCCACAGCCACC	23	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	NA,NA|537aa|down_0|NZ_CP009312.1_1505980_1507591_-,NA|562aa|down_1|NZ_CP009312.1_1507904_1509590_-	NA|179aa|up_9|NZ_CP009312.1_1491891_1492428_+	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|522aa|up_8|NZ_CP009312.1_1492449_1494015_-	pfam10103, Zincin_2, Zincin-like metallopeptidase	NA|343aa|up_7|NZ_CP009312.1_1494231_1495260_+	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|1018aa|up_6|NZ_CP009312.1_1495325_1498379_+	PRK00068, PRK00068, hypothetical protein; Validated	NA|351aa|up_5|NZ_CP009312.1_1498636_1499689_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|432aa|up_4|NZ_CP009312.1_1499870_1501166_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|497aa|up_3|NZ_CP009312.1_1501351_1502842_+	pfam08903, DUF1846, Domain of unknown function (DUF1846)	NA|171aa|up_2|NZ_CP009312.1_1502848_1503361_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|197aa|up_1|NZ_CP009312.1_1503756_1504347_+	pfam04260, DUF436, Protein of unknown function (DUF436)	NA|263aa|up_0|NZ_CP009312.1_1504421_1505210_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|537aa|down_0|NZ_CP009312.1_1505980_1507591_-	NA	NA|562aa|down_1|NZ_CP009312.1_1507904_1509590_-	NA	NA|875aa|down_2|NZ_CP009312.1_1509823_1512448_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|270aa|down_3|NZ_CP009312.1_1512487_1513297_-	TIGR02067, his_9_HisN, histidinol-phosphatase, inositol monophosphatase family	NA|281aa|down_4|NZ_CP009312.1_1513440_1514283_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|408aa|down_5|NZ_CP009312.1_1514395_1515619_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|388aa|down_6|NZ_CP009312.1_1515666_1516830_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|174aa|down_7|NZ_CP009312.1_1516975_1517497_+	COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction mechanisms]	NA|465aa|down_8|NZ_CP009312.1_1517678_1519073_+	cd14792, GH27, glycosyl hydrolase family 27 (GH27)	NA|406aa|down_9|NZ_CP009312.1_1519196_1520414_+	cd14792, GH27, glycosyl hydrolase family 27 (GH27)
GCF_001293125.1_ASM129312v1	NZ_CP009312	Lawsonella clevelandensis strain X1036 chromosome, complete genome	4	1628943-1629138	4	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	Type I-A	CCTGCCCCCACTGTGGCGGCACCGG	25	0	0	NA	NA	NA	3	3	Orphan	WYL,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG,csa3	NA|94aa|up_2|NZ_CP009312.1_1625707_1625989_+,NA	NA|722aa|up_9|NZ_CP009312.1_1615460_1617626_+	pfam03772, Competence, Competence protein	NA|321aa|up_8|NZ_CP009312.1_1617630_1618593_+	PRK07914, PRK07914, hypothetical protein; Reviewed	NA|87aa|up_7|NZ_CP009312.1_1618737_1618998_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|191aa|up_6|NZ_CP009312.1_1619187_1619760_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|619aa|up_5|NZ_CP009312.1_1619932_1621789_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|519aa|up_4|NZ_CP009312.1_1621825_1623382_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|665aa|up_3|NZ_CP009312.1_1623594_1625589_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|94aa|up_2|NZ_CP009312.1_1625707_1625989_+	NA	NA|413aa|up_1|NZ_CP009312.1_1625991_1627230_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|347aa|up_0|NZ_CP009312.1_1627361_1628402_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|252aa|down_0|NZ_CP009312.1_1629676_1630432_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|335aa|down_1|NZ_CP009312.1_1630491_1631496_+	pfam02562, PhoH, PhoH-like protein	NA|157aa|down_2|NZ_CP009312.1_1631499_1631970_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|451aa|down_3|NZ_CP009312.1_1631991_1633344_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|309aa|down_4|NZ_CP009312.1_1633336_1634263_+	PRK00089, era, GTPase Era; Reviewed	NA|255aa|down_5|NZ_CP009312.1_1634265_1635030_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|259aa|down_6|NZ_CP009312.1_1635230_1636007_+	PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional	csa3|125aa|down_7|NZ_CP009312.1_1636035_1636410_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|462aa|down_8|NZ_CP009312.1_1636588_1637974_+	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|291aa|down_9|NZ_CP009312.1_1638085_1638958_+	COG2860, COG2860, Predicted membrane protein [Function unknown]
