assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001293145.1_ASM129314v1	NZ_CP010453	Bifidobacterium longum strain BG7 chromosome, complete genome	1	302371-302456	1	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|210aa|up_4|NZ_CP010453.1_297167_297797_+,NA|695aa|down_6|NZ_CP010453.1_310912_312997_+	NA|560aa|up_9|NZ_CP010453.1_289913_291593_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|245aa|up_8|NZ_CP010453.1_291826_292561_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|889aa|up_7|NZ_CP010453.1_292644_295311_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|94aa|up_6|NZ_CP010453.1_295422_295704_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|475aa|up_5|NZ_CP010453.1_295746_297171_+	pfam02646, RmuC, RmuC family	NA|210aa|up_4|NZ_CP010453.1_297167_297797_+	NA	NA|283aa|up_3|NZ_CP010453.1_297890_298739_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|100aa|up_2|NZ_CP010453.1_298905_299205_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NZ_CP010453.1_299208_300750_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NZ_CP010453.1_300775_302275_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|355aa|down_0|NZ_CP010453.1_302570_303635_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NZ_CP010453.1_303645_303960_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|618aa|down_2|NZ_CP010453.1_304133_305987_+	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|538aa|down_3|NZ_CP010453.1_306205_307819_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_4|NZ_CP010453.1_308024_310094_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_5|NZ_CP010453.1_310401_310791_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|695aa|down_6|NZ_CP010453.1_310912_312997_+	NA	NA|912aa|down_7|NZ_CP010453.1_313222_315958_-	NF000540, alt_ValS, valine--tRNA ligase	NA|509aa|down_8|NZ_CP010453.1_316101_317628_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_9|NZ_CP010453.1_317689_318376_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_001293145.1_ASM129314v1	NZ_CP010453	Bifidobacterium longum strain BG7 chromosome, complete genome	2	1519634-1519714	2	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|107aa|up_5|NZ_CP010453.1_1509996_1510317_-,NA|284aa|down_0|NZ_CP010453.1_1520614_1521466_+	NA|170aa|up_9|NZ_CP010453.1_1505872_1506382_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NZ_CP010453.1_1506421_1507480_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NZ_CP010453.1_1507705_1508662_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NZ_CP010453.1_1508786_1509731_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NZ_CP010453.1_1509996_1510317_-	NA	NA|263aa|up_4|NZ_CP010453.1_1510316_1511105_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NZ_CP010453.1_1511243_1512797_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NZ_CP010453.1_1512918_1513914_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NZ_CP010453.1_1514032_1517710_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|530aa|up_0|NZ_CP010453.1_1517770_1519360_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|284aa|down_0|NZ_CP010453.1_1520614_1521466_+	NA	NA|532aa|down_1|NZ_CP010453.1_1521769_1523365_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NZ_CP010453.1_1523413_1523935_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NZ_CP010453.1_1523984_1525694_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NZ_CP010453.1_1525697_1526867_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NZ_CP010453.1_1526868_1527960_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|NZ_CP010453.1_1528124_1529759_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|428aa|down_7|NZ_CP010453.1_1530038_1531322_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_8|NZ_CP010453.1_1531377_1532190_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|375aa|down_9|NZ_CP010453.1_1532527_1533652_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_001293145.1_ASM129314v1	NZ_CP010453	Bifidobacterium longum strain BG7 chromosome, complete genome	3	1923313-1925467	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas2,cas1,cas9	c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Type II-B,,Type II-C,Type II-A	GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG	36,36,36	0	0	NA	NA	NA:NA:NA	33,33,32	33	TypeII-B,,TypeII-C,TypeII-A	c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|97aa|up_0|NZ_CP010453.1_1923001_1923292_-,NA	NA|1395aa|up_9|NZ_CP010453.1_1907326_1911511_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	WYL|362aa|up_8|NZ_CP010453.1_1911588_1912674_+	pfam13280, WYL, WYL domain	NA|340aa|up_7|NZ_CP010453.1_1912907_1913927_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|431aa|up_6|NZ_CP010453.1_1914140_1915433_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|261aa|up_5|NZ_CP010453.1_1915706_1916489_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|327aa|up_4|NZ_CP010453.1_1916678_1917659_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|725aa|up_3|NZ_CP010453.1_1917835_1920010_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_2|NZ_CP010453.1_1920092_1920830_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|605aa|up_1|NZ_CP010453.1_1921105_1922920_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|97aa|up_0|NZ_CP010453.1_1923001_1923292_-	NA	cas2|111aa|down_0|NZ_CP010453.1_1925517_1925850_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_1|NZ_CP010453.1_1925846_1926752_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1139aa|down_2|NZ_CP010453.1_1926755_1930172_-	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain	NA|473aa|down_3|NZ_CP010453.1_1930405_1931824_-	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1	NA|217aa|down_4|NZ_CP010453.1_1931872_1932523_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|518aa|down_5|NZ_CP010453.1_1932690_1934244_-	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|428aa|down_6|NZ_CP010453.1_1934296_1935580_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|225aa|down_7|NZ_CP010453.1_1935576_1936251_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|226aa|down_8|NZ_CP010453.1_1936425_1937103_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|235aa|down_9|NZ_CP010453.1_1937234_1937939_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_001293145.1_ASM129314v1	NZ_CP010453	Bifidobacterium longum strain BG7 chromosome, complete genome	4	2065605-2065690	4	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|51aa|up_8|NZ_CP010453.1_2055346_2055499_-,NA|30aa|up_5|NZ_CP010453.1_2057692_2057782_-,NA|211aa|up_4|NZ_CP010453.1_2057973_2058606_-,NA|243aa|down_1|NZ_CP010453.1_2067770_2068499_+	NA|539aa|up_9|NZ_CP010453.1_2053571_2055188_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|51aa|up_8|NZ_CP010453.1_2055346_2055499_-	NA	NA|297aa|up_7|NZ_CP010453.1_2055820_2056711_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_CP010453.1_2056841_2057540_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_CP010453.1_2057692_2057782_-	NA	NA|211aa|up_4|NZ_CP010453.1_2057973_2058606_-	NA	NA|513aa|up_3|NZ_CP010453.1_2058733_2060272_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_CP010453.1_2060286_2061411_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_CP010453.1_2061508_2062672_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NZ_CP010453.1_2062673_2063147_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_CP010453.1_2066495_2067563_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|243aa|down_1|NZ_CP010453.1_2067770_2068499_+	NA	NA|348aa|down_2|NZ_CP010453.1_2068539_2069583_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NZ_CP010453.1_2070115_2071684_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NZ_CP010453.1_2072493_2073294_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NZ_CP010453.1_2073500_2075681_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|304aa|down_6|NZ_CP010453.1_2075956_2076868_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_7|NZ_CP010453.1_2076949_2077492_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_8|NZ_CP010453.1_2077591_2078587_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|133aa|down_9|NZ_CP010453.1_2078667_2079066_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
