assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001293505.1_ASM129350v1	NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	1	379561-379650	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA|95aa|up_9|NZ_CP012681.1_373719_374004_-,NA|101aa|up_7|NZ_CP012681.1_375048_375351_-,NA|65aa|down_1|NZ_CP012681.1_381567_381762_+,NA|97aa|down_2|NZ_CP012681.1_381761_382052_+,NA|99aa|down_3|NZ_CP012681.1_382054_382351_+	NA|95aa|up_9|NZ_CP012681.1_373719_374004_-	NA	NA|65aa|up_8|NZ_CP012681.1_374040_374235_-	pfam11058, Ral, Antirestriction protein Ral	NA|101aa|up_7|NZ_CP012681.1_375048_375351_-	NA	NA|70aa|up_6|NZ_CP012681.1_375714_375924_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|358aa|up_5|NZ_CP012681.1_375964_377038_-	pfam13614, AAA_31, AAA domain	NA|114aa|up_4|NZ_CP012681.1_377176_377518_-	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|230aa|up_3|NZ_CP012681.1_377584_378274_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|up_2|NZ_CP012681.1_378384_378600_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|94aa|up_1|NZ_CP012681.1_378710_378992_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP012681.1_379026_379173_+	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|479aa|down_0|NZ_CP012681.1_380054_381491_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|65aa|down_1|NZ_CP012681.1_381567_381762_+	NA	NA|97aa|down_2|NZ_CP012681.1_381761_382052_+	NA	NA|99aa|down_3|NZ_CP012681.1_382054_382351_+	NA	NA|149aa|down_4|NZ_CP012681.1_382307_382754_+	pfam05772, NinB, NinB protein	NA|58aa|down_5|NZ_CP012681.1_382750_382924_+	pfam17466, NinD, Family of unknown function	NA|59aa|down_6|NZ_CP012681.1_382890_383067_+	pfam05322, NinE, NINE Protein	NA|114aa|down_7|NZ_CP012681.1_383069_383411_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_8|NZ_CP012681.1_383403_383580_+	pfam05810, NinF, NinF protein	NA|202aa|down_9|NZ_CP012681.1_383572_384178_+	pfam05766, NinG, Bacteriophage Lambda NinG protein
GCF_001293505.1_ASM129350v1	NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	2	3030119-3031899	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28,29,29	2	2	3031854-3031886|3031839-3031870	NZ_CP012681.1_2228846-2228814|NZ_CP012681.1_2228846-2228815	I-E:I-E:I-E:I-E:I-E	27,28,29,28,27	29	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP012681.1_3021985_3022747_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP012681.1_3022727_3023777_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP012681.1_3023773_3024253_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP012681.1_3024252_3024963_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP012681.1_3024981_3025293_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP012681.1_3025483_3025807_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP012681.1_3025857_3026463_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP012681.1_3026449_3027889_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP012681.1_3027898_3028807_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP012681.1_3029057_3030104_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP012681.1_3031995_3032289_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP012681.1_3032288_3033209_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP012681.1_3033205_3033856_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP012681.1_3033837_3034584_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP012681.1_3034594_3035653_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP012681.1_3035666_3036227_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|down_6|NZ_CP012681.1_3040898_3041852_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_7|NZ_CP012681.1_3041939_3042674_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_8|NZ_CP012681.1_3042749_3044462_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_9|NZ_CP012681.1_3044461_3046261_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_001293505.1_ASM129350v1	NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	3	3048030-3049523	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,29,28	0	0	NA	NA	I-E:I-E:I-E	24,24,23	24	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA,NA	cas6e|217aa|up_9|NZ_CP012681.1_3033205_3033856_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|up_8|NZ_CP012681.1_3033837_3034584_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_7|NZ_CP012681.1_3034594_3035653_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_6|NZ_CP012681.1_3035666_3036227_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|up_5|NZ_CP012681.1_3040898_3041852_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP012681.1_3041939_3042674_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP012681.1_3042749_3044462_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP012681.1_3044461_3046261_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP012681.1_3046684_3047047_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP012681.1_3047134_3047932_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP012681.1_3049819_3050491_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP012681.1_3050626_3051925_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP012681.1_3052007_3053645_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP012681.1_3053872_3054673_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP012681.1_3055440_3055737_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP012681.1_3055702_3056059_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP012681.1_3056142_3058377_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP012681.1_3058428_3059724_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP012681.1_3059781_3062538_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP012681.1_3062581_3063724_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
