assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001304715.1_ASM130471v1	NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	1	308453-308540	1	CRISPRCasFinder	no		cas14j,cas14k,DEDDh,c2c10_CAS-V-U3,csa3,cas3,WYL,cas5,cas8c,cas7,RT	Orphan	GTTTTGAGCCATGCCACGCTTATTGAAT	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,DEDDh,c2c10_CAS-V-U3,csa3,cas3,WYL,cas5,cas8c,cas7,RT	NA|169aa|up_5|NZ_CP009240.1_303554_304061_-,NA|112aa|up_4|NZ_CP009240.1_304057_304393_-,NA|301aa|up_3|NZ_CP009240.1_304402_305305_-,NA|83aa|down_2|NZ_CP009240.1_310865_311114_+,NA|79aa|down_3|NZ_CP009240.1_311177_311414_+,NA|138aa|down_4|NZ_CP009240.1_311590_312004_+	NA|256aa|up_9|NZ_CP009240.1_300226_300994_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|217aa|up_8|NZ_CP009240.1_301005_301656_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|268aa|up_7|NZ_CP009240.1_301789_302593_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|266aa|up_6|NZ_CP009240.1_302605_303403_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|169aa|up_5|NZ_CP009240.1_303554_304061_-	NA	NA|112aa|up_4|NZ_CP009240.1_304057_304393_-	NA	NA|301aa|up_3|NZ_CP009240.1_304402_305305_-	NA	NA|315aa|up_2|NZ_CP009240.1_305315_306260_-	COG4632, EpsL, Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|269aa|up_1|NZ_CP009240.1_306283_307090_-	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|326aa|up_0|NZ_CP009240.1_307108_308086_-	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor	NA|199aa|down_0|NZ_CP009240.1_309875_310472_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|72aa|down_1|NZ_CP009240.1_310639_310855_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|83aa|down_2|NZ_CP009240.1_310865_311114_+	NA	NA|79aa|down_3|NZ_CP009240.1_311177_311414_+	NA	NA|138aa|down_4|NZ_CP009240.1_311590_312004_+	NA	NA|68aa|down_5|NZ_CP009240.1_312296_312500_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|683aa|down_6|NZ_CP009240.1_312976_315025_-	pfam03389, MobA_MobL, MobA/MobL family	NA|101aa|down_7|NZ_CP009240.1_315303_315606_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|89aa|down_8|NZ_CP009240.1_315610_315877_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|360aa|down_9|NZ_CP009240.1_316280_317360_-	PRK07094, PRK07094, biotin synthase; Provisional
GCF_001304715.1_ASM130471v1	NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	2	1557186-1560793	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas14j,cas14k	cas14j,cas14k,DEDDh,c2c10_CAS-V-U3,csa3,cas3,WYL,cas5,cas8c,cas7,RT	Type I-U,Type I-C, Type I-U?	GTCGCACCCTTCACGGGTGCGTGGATTGAAAT,GTCGCACCCTTCACGGGTGCGTGGATTGAAAT,GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	53,53,30	53	TypeI-C,TypeI-U,TypeV,TypeI-U?	cas14j,cas14k,DEDDh,c2c10_CAS-V-U3,csa3,cas3,WYL,cas5,cas8c,cas7,RT	NA|167aa|up_9|NZ_CP009240.1_1544520_1545021_+,NA	NA|167aa|up_9|NZ_CP009240.1_1544520_1545021_+	NA	NA|201aa|up_8|NZ_CP009240.1_1545017_1545620_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|168aa|up_7|NZ_CP009240.1_1545650_1546154_-	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase	NA|863aa|up_6|NZ_CP009240.1_1546317_1548906_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|268aa|up_5|NZ_CP009240.1_1549087_1549891_+	sd00010, SLR, Sel1-like repeat	cas3|731aa|up_4|NZ_CP009240.1_1550010_1552203_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|218aa|up_3|NZ_CP009240.1_1552220_1552874_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|605aa|up_2|NZ_CP009240.1_1552870_1554685_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|301aa|up_1|NZ_CP009240.1_1554686_1555589_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas14j|372aa|up_0|NZ_CP009240.1_1555725_1556841_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas14k|419aa|down_0|NZ_CP009240.1_1560986_1562243_+	pfam01385, OrfB_IS605, Probable transposase	NA|261aa|down_1|NZ_CP009240.1_1562922_1563705_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|334aa|down_2|NZ_CP009240.1_1563718_1564720_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|429aa|down_3|NZ_CP009240.1_1564828_1566115_+	pfam14559, TPR_19, Tetratricopeptide repeat	NA|176aa|down_4|NZ_CP009240.1_1566142_1566670_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|327aa|down_5|NZ_CP009240.1_1566684_1567665_+	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|372aa|down_6|NZ_CP009240.1_1567786_1568902_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|291aa|down_7|NZ_CP009240.1_1568882_1569755_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|152aa|down_8|NZ_CP009240.1_1570298_1570754_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|222aa|down_9|NZ_CP009240.1_1570820_1571486_+	COG2860, COG2860, Predicted membrane protein [Function unknown]
