The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	27282	70036	4100705	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	77634	136108	4100705	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	164895	225406	4100705	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164895_165846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167289_168192_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168169_168799_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169081_170512_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170545_171175_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171223_172831_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172855_173539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173620_174097_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174303_175254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176369_176897_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176988_177804_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177864_178599_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178636_180715_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180964_181237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181338_182424_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182427_184332_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184328_188003_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188063_188627_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188634_189057_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189084_189504_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189532_190006_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190105_190603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190757_193028_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193076_194309_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194407_195358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195460_196096_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196092_196986_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197380_198481_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198562_198937_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198996_201861_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202005_202746_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202815_204027_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204055_205024_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205637_206588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206744_207068_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207172_208213_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208218_208998_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209043_209340_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209365_209641_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209697_210342_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210341_211028_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211157_212009_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212059_212785_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212816_214166_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214277_215210_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215667_218463_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219056_221999_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222070_222790_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222828_223377_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223531_224431_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224455_225406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	233338	286926	4100705	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233338_234289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234375_235326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235322_236273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236371_237169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238118_238529_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239550_240294_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240337_241381_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241551_243654_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245064_246021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246039_246531_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246527_247883_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247883_248582_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248578_249280_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249532_250582_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250687_251629_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251625_253515_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253601_254240_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254382_255768_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255698_256235_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256386_257778_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257794_258775_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258910_259894_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259958_260858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260964_262719_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262726_263851_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263864_264845_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265575_266526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274129_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277142_278093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279657_280269_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281301_282684_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284842_285979_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285975_286926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	469548	586394	4100705	tRNA,transposase	Acinetobacter_phage(23.53%)	100	NA	NA
WP_010929956.1|469548_470499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|471221_472496_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|472582_473665_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|473675_474488_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|474524_474851_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|474855_475416_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|475656_476649_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|476667_477663_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|477678_479055_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|479047_481429_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|481445_481835_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|481961_482192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|482296_483247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|483345_484296_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|484292_485165_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|486095_487382_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|487435_488362_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|488380_488836_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|489687_490479_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|490510_491131_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|491127_491757_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|491769_492378_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|492374_493364_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|493469_494684_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|496635_497586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499019_500306_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|500471_500780_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|500780_501446_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|501486_503277_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503389_504250_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|504246_505452_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505448_506333_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507849_508284_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508246_509245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509356_510502_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510576_511905_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511938_512529_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512818_513613_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514782_515517_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515523_516390_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516397_518173_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518215_518713_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519009_519960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520058_521009_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521349_522300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524623_525772_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|525816_526479_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526592_527585_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527581_528319_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|528398_529220_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529308_530172_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530298_530535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532509_533544_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|533602_534580_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534587_535508_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931393.1|537207_538113_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538156_539290_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539418_540369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540467_542537_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542579_544682_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544988_546065_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546140_547025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547207_547630_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547639_549040_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549082_549988_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550086_551628_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551662_552202_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552214_552685_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552822_553065_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553181_554063_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554135_554456_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|555307_556258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557581_558358_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558392_560165_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560166_561069_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561193_561553_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561584_562547_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562645_563596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563608_564544_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564603_565443_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565439_566609_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566605_567895_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567937_568312_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568417_569155_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569162_569867_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570130_571651_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571706_572270_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572288_573320_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573316_574105_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574125_574284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574280_575270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577026_577977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579199_580102_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580103_580958_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581004_582114_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582124_582643_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582672_583305_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583376_584036_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584032_585253_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585521_586394_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	590808	654641	4100705	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|590808_591825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592096_592723_-	aminotransferase class IV family protein	NA	NA	NA	NA	NA
WP_010931367.1|592778_593906_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593911_599629_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600196_601141_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601329_602265_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602382_603954_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604033_605242_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605739_606657_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609017_609239_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609569_610586_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610670_610922_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610925_611741_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611853_612732_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612843_614607_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614722_616063_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617132_618557_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618556_619258_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620762_621713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621808_622780_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622784_623465_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623602_623995_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624102_625119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625358_626144_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626238_627648_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627658_628459_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628479_629250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629292_629760_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629756_630707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632655_633534_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634460_637439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637792_638743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638739_639828_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639863_640727_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641866_642256_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642259_643042_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643075_643861_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644136_645276_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645272_646064_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646060_646810_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646806_647679_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647678_648680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648676_649840_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649865_650549_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650502_651837_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651829_652924_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653690_654641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	673552	750861	4100705	integrase,tRNA,protease,transposase	Bacillus_phage(20.0%)	57	720689:720707	740577:740595
WP_010929956.1|673552_674503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674601_676077_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677664_678552_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678554_679496_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679541_681107_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682884_684210_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684392_685850_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685813_686311_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686341_687313_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|687365_687803_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687926_688595_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689323_690427_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|690529_691807_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691818_692844_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692845_694216_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|694216_695353_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695399_697325_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697321_698443_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698439_699594_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699590_700721_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700728_702294_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702300_703683_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703961_704573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704664_706080_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706097_706808_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706804_708127_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708206_710168_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710293_711607_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711715_713014_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713196_714105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714114_714324_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714335_716015_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716116_717070_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717160_717988_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717986_719873_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719869_720469_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720517_721417_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720689:720707	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721625_722576_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722698_723313_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723441_724038_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724034_724817_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724889_725981_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726260_727388_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727729_728776_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728923_732043_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732044_734996_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735011_736223_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|736406_737357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737373_737868_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737871_738129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738672_739584_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739665_739950_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740733_741684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740577:740595	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742102_744667_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744711_746565_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746897_748469_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749910_750861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	997845	1100239	4100705	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997845_998961_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999061_999880_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999977_1000589_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000748_1002125_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002187_1002646_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002731_1003427_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1003488_1003770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004332_1005085_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005129_1006206_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006202_1007153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007255_1007918_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008012_1008183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008535_1009537_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009539_1010736_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010756_1011560_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011640_1011937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011967_1012531_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012571_1013429_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013436_1014186_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014207_1015080_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015108_1015888_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015921_1016719_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019373_1019766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019759_1020620_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020623_1021586_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022362_1023052_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023912_1024863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025212_1026082_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026152_1026848_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026837_1027347_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027343_1028564_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028511_1029414_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030300_1031587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031625_1032999_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033037_1033739_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034037_1035027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035127_1035589_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035604_1036153_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036294_1037770_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037875_1038967_+	M14 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931170.1|1038970_1039753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039762_1040551_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041676_1042111_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042107_1043118_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043161_1044088_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044374_1044743_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044959_1045910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045954_1048381_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048429_1049122_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049194_1050394_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050411_1051317_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051432_1052362_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052387_1053734_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053761_1054511_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054524_1055307_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055499_1056450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056511_1057621_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058133_1058970_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059039_1060005_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060001_1060952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061337_1061880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062915_1063866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064107_1064476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064521_1065646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066780_1067533_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067624_1068245_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068348_1069299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069295_1071404_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071548_1072208_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072239_1072704_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072979_1073165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073216_1073969_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073975_1075238_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075279_1076518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077595_1078723_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078733_1079561_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079547_1080414_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081780_1082185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082276_1083227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083596_1084508_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084522_1085233_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085229_1086474_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086475_1086910_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086938_1087244_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087342_1088293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088349_1089504_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089578_1090529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091060_1091858_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091905_1092559_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092515_1093604_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093768_1095994_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098271_1099168_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099288_1100239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	1130625	1201596	4100705	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130625_1131576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131632_1132745_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135128_1136079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136669_1137446_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137563_1137827_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137927_1138932_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139132_1140734_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140759_1141518_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141609_1142266_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142356_1143121_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143130_1143319_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143374_1144418_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144414_1144828_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144824_1145445_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145725_1146676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146843_1148235_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148307_1148886_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149002_1150400_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150515_1151721_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151820_1152339_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152433_1152679_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152906_1153221_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153310_1158500_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158496_1160665_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160720_1163036_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163040_1164360_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164378_1166052_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166056_1166725_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166881_1170703_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171033_1171984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172005_1173151_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173299_1174229_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174225_1175314_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175310_1176114_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176110_1176842_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176899_1178189_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178285_1178888_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183441_1183780_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184487_1184754_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186460_1187411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187407_1188739_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189999_1192000_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191992_1192634_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192630_1193038_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193034_1193835_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193909_1194614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194645_1195440_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195436_1196387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196485_1197436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197534_1197969_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198051_1200388_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200579_1201596_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	1248990	1329865	4100705	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1248990_1249941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249937_1250888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251148_1252177_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252256_1253555_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253551_1254133_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254445_1258492_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258732_1266394_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266390_1267341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268480_1268954_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269093_1269714_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269849_1270650_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270704_1271796_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271817_1272261_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272289_1272922_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273032_1273449_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273441_1274134_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274240_1274615_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274691_1275501_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275596_1276541_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276579_1277551_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277641_1278079_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278137_1279019_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280022_1280883_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280915_1282298_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282294_1283314_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283686_1284181_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284188_1284929_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285009_1286614_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286653_1287442_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288644_1289733_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290613_1291426_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291438_1291747_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291864_1293595_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293596_1294742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1294871_1295540_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295661_1296129_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296264_1297647_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297643_1298768_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298764_1301401_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301816_1302767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306513_1307125_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307347_1308808_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308904_1310497_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310850_1311108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311109_1312450_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312545_1313235_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313247_1314678_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316402_1317224_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317234_1318806_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318834_1319812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319838_1320642_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320638_1321433_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321440_1322676_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322668_1323103_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323852_1324803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325424_1327152_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327263_1328622_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328914_1329865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	1449260	1501413	4100705	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1449260_1450211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450377_1450731_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450743_1451106_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451147_1451573_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451775_1453032_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453230_1454211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454360_1455602_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455700_1456651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456659_1457355_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460176_1460776_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460786_1462952_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462975_1464760_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464759_1464849_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465543_1465816_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465815_1467882_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1468927_1469878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469993_1470326_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470322_1471009_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1470995_1471955_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1471996_1474357_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474356_1474989_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475090_1476431_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476477_1477833_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1477958_1478603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478547_1478865_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479137_1479653_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479746_1479908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1479923_1480679_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481017_1481224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481231_1481891_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482185_1484390_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484500_1485724_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485846_1486821_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486888_1488082_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488096_1488897_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488893_1490750_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490746_1491352_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491370_1492756_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493481_1494708_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1494796_1495579_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495677_1496628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496654_1497428_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497439_1498681_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500462_1501413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	1545338	1613425	4100705	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1545338_1545827_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545944_1546523_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546628_1546997_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547095_1548046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548052_1549165_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549851_1551054_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1551089_1551236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1551257_1553918_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1553930_1557335_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558002_1560228_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560274_1560601_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560651_1561260_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561358_1562309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562378_1563143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563139_1563739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563842_1564694_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564753_1565380_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565376_1566327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566425_1567538_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567527_1568529_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568634_1570146_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570142_1571447_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571558_1572119_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572386_1572941_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573396_1573612_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573866_1576464_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576460_1577648_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1578307_1578922_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579010_1580138_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580149_1581055_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581947_1582898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583079_1583832_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583900_1584560_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584556_1585285_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585297_1587577_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587601_1587805_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587846_1588479_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588614_1589532_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589528_1590242_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590479_1591250_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591254_1591854_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592098_1593589_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593647_1593932_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1594069_1594225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594497_1595424_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595560_1596301_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596467_1597844_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598025_1598931_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600582_1602385_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1602511_1603153_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603251_1604202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604223_1605444_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605629_1607042_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607105_1608173_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608172_1609660_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609669_1610614_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610773_1611472_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611549_1612455_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612474_1613425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	1649374	1704965	4100705	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649374_1650325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650383_1651157_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651149_1652706_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652702_1653653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654979_1655582_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655821_1656523_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656516_1657299_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657483_1658434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658532_1659270_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659459_1660218_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660264_1661254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661431_1662400_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663939_1664908_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664916_1665858_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666331_1667342_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667332_1668847_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668843_1670190_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670192_1671227_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671276_1672902_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673454_1674405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674509_1675457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675510_1677325_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677317_1677992_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678121_1681196_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681209_1681509_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681823_1682447_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682690_1683560_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683537_1684482_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684567_1685494_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685606_1686386_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686376_1687573_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687603_1688554_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688775_1689465_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689529_1690285_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690336_1691329_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691338_1692292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692407_1693370_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694771_1695200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695196_1696147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1696440_1697178_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697601_1698789_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698792_1699173_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700892_1701864_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701877_1702591_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702595_1703513_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703619_1703916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704014_1704965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	1936849	2006501	4100705	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936849_1939507_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939584_1940787_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940783_1941296_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941418_1941856_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1942132_1943083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1943181_1944132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1944385_1946191_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1946304_1946472_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946535_1946772_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1947140_1948340_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1949855_1950806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951257_1952259_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952431_1953289_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953285_1954548_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954648_1955023_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1955095_1956283_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956367_1957138_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957251_1958016_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957966_1959268_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1959264_1960071_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1961815_1962787_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962943_1963456_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963614_1964589_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965589_1966384_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966409_1967216_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967326_1967917_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967927_1969106_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969208_1969583_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969835_1971167_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971233_1974464_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975954_1976701_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976785_1977247_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977284_1978343_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978305_1980135_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1980174_1980747_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1982171_1982993_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983311_1984634_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984993_1985629_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985588_1986539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987409_1988282_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988359_1989499_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989857_1991114_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991119_1991647_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991651_1992470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992469_1993192_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993213_1993528_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993545_1994694_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994724_1995600_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995596_1996916_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996988_1998185_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_054604385.1|1998195_1999683_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002277_2003177_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003314_2004280_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004378_2005329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005550_2006501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2017997	2067393	4100705	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
WP_005013747.1|2017997_2018948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020085_2020382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020556_2021909_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022051_2023068_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025047_2026061_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2026147_2027053_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027209_2027554_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027711_2028170_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028183_2030400_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030396_2031458_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031486_2032461_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032412_2033231_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033243_2033852_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2034026_2034422_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034440_2035880_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035908_2036256_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036274_2037225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037877_2038828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038911_2040729_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040802_2041450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041462_2042392_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042561_2043026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043273_2043954_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044002_2045694_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045709_2046261_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046257_2046629_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046741_2047578_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047588_2048113_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048210_2048390_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048519_2049494_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049624_2049981_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049970_2050846_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050944_2051829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051850_2053146_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_054604386.1|2054094_2054745_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2054832_2056353_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056610_2058476_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059521_2060472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2061444_2061804_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061791_2063228_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063224_2063878_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063874_2065068_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065171_2066446_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066442_2067393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2078597	2119288	4100705	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2078597_2079548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079646_2080597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080556_2080970_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081254_2081554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081963_2084246_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2084711_2084906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2084931_2086962_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086981_2087194_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087471_2088011_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2088124_2089420_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089496_2090654_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090837_2091737_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091755_2093060_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093025_2094132_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094219_2094456_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094594_2095665_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095668_2097024_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2097050_2098211_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098213_2098852_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2098853_2100140_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2100198_2101494_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101500_2102007_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102003_2103152_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2103179_2103605_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103927_2106810_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106902_2107658_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108423_2109773_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109871_2110822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110920_2111871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111944_2112418_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112443_2113652_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113648_2114422_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114421_2115045_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115210_2115471_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115774_2116356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116422_2116677_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116663_2119288_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2147071	2212620	4100705	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2147071_2148022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148222_2149032_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2149156_2150107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150103_2150997_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151121_2151316_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151315_2151657_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151666_2153529_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153658_2154171_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2154173_2154497_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154498_2154909_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154946_2156158_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2156175_2156688_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156903_2157395_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157647_2159684_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159761_2160964_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2161092_2161743_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163300_2164251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164821_2165034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165051_2165783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165817_2166459_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166451_2167120_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169332_2170109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2170130_2171288_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171284_2171716_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2171712_2172516_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172529_2172931_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172997_2173969_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174034_2175258_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175485_2176436_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176559_2179013_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179201_2180506_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180610_2181264_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181266_2182577_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2182773_2183334_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183445_2183646_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183991_2184558_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184641_2184845_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2185151_2185472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185513_2185795_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185869_2187126_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187508_2187838_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189408_2190230_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190229_2191369_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191375_2192272_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2192268_2194194_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194553_2197166_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197218_2199519_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199515_2200724_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2200985_2201360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201356_2202307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202405_2204400_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204459_2205425_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205414_2208276_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208278_2208785_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208889_2210098_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210099_2211038_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211199_2211673_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211669_2212620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2600953	2667453	4100705	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2600953_2601904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2602273_2602846_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2602848_2603859_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2603851_2604352_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2604362_2604704_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2604715_2605507_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2605523_2605793_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2605815_2606604_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2606650_2607667_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2607883_2609326_-	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2609504_2611124_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2611244_2613065_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2613143_2614676_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2614709_2616356_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2616425_2617448_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2617465_2618599_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2618601_2619291_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2619290_2620076_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2620119_2620884_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2620922_2622344_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2622409_2623114_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2623161_2623581_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2623593_2624001_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2624184_2624895_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2625021_2625312_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2625329_2625812_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2630317_2631472_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2631777_2632794_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2633040_2633829_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2633895_2634576_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2634572_2635343_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2635441_2636392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2636447_2637365_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2637375_2638554_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2638573_2639569_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2641157_2641766_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2641753_2642794_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2642811_2643774_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2643770_2644964_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2644960_2645758_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2645783_2646770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2646788_2648828_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2649029_2649710_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2649723_2650635_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2650631_2651210_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2651348_2652254_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2652261_2655681_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2655668_2658269_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2659224_2659857_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2660250_2661009_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2661005_2662208_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2662395_2663346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2664253_2665399_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2665385_2666141_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2666257_2666437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2666502_2667453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2830021	2892306	4100705	tRNA,transposase	Oenococcus_phage(33.33%)	49	NA	NA
WP_023853639.1|2830021_2830972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2831070_2832021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2832223_2833213_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930230.1|2833296_2833650_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2833727_2834336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2836009_2836588_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2836612_2837566_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2837605_2838523_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2838644_2839571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2839578_2840325_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2840651_2841593_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2841819_2843517_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2843951_2845373_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2845526_2846306_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2846430_2847309_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2847414_2848539_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2848584_2849547_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2849539_2850394_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2850501_2850912_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2850908_2851859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2851957_2852839_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2852916_2854296_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2854334_2855180_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2855195_2855540_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2855542_2856079_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2856251_2856827_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2856929_2857667_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2857734_2859372_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2859479_2860235_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2860222_2861185_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2861286_2862087_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2862148_2864224_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2864388_2866764_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2866844_2868200_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2869678_2870401_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2870455_2871439_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2871568_2872519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2872515_2873418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2873505_2874264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2874276_2875368_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2875465_2876893_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2877122_2878337_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2878382_2881253_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_005012067.1|2881679_2882630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930202.1|2884712_2885201_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2885326_2888023_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2888177_2890460_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2890633_2891257_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2891355_2892306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2914224	2970358	4100705	tRNA,protease,holin,transposase	Catovirus(22.22%)	45	NA	NA
WP_010930190.1|2914224_2915745_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2915787_2916090_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2916086_2916719_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2916797_2918663_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2918659_2919454_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2919482_2920598_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2921502_2922381_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2922380_2923205_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2923372_2924323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2924535_2927385_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2927366_2928095_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2928235_2929699_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2929695_2930067_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2930084_2931398_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2931434_2931893_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2932005_2932956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2932952_2933966_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2934105_2935092_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2935450_2936158_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936738_2937689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2937840_2938443_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2938461_2939094_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|2939331_2941218_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2941236_2942079_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2942075_2943434_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2943654_2944449_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2944679_2946173_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2946408_2948490_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2948684_2949725_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2949859_2950876_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2950897_2951755_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2951799_2952576_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2952943_2953894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2953920_2954385_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2955591_2957880_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2957996_2958869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2958911_2960066_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2960100_2960931_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2961014_2962559_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2962601_2962961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2962962_2963376_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2963416_2963734_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2963818_2964535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2964798_2966220_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|2969341_2970358_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	2978981	3114140	4100705	tRNA,transposase	uncultured_Caudovirales_phage(10.0%)	117	NA	NA
WP_010931363.1|2978981_2979998_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2980935_2982363_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2982359_2983382_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2983371_2983845_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2983985_2984873_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2984869_2986513_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2986509_2987559_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930158.1|2988347_2989364_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2989463_2990096_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2990104_2990494_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2990546_2991599_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2992462_2994169_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2994242_2994743_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2994757_2996815_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2996841_2997135_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2997236_2998184_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|2998196_2999072_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|2999192_2999753_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|2999787_3000111_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3000546_3001284_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3001582_3002533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3002776_3003040_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3003113_3003395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3003411_3004272_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3004268_3004604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3004657_3005308_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3006988_3007933_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3007978_3008296_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3008298_3009237_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3009414_3009900_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3009918_3010467_+	DinB family protein	NA	NA	NA	NA	NA
WP_023994624.1|3010498_3010651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|3010743_3011877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3011980_3012622_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3012776_3015125_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3015121_3016060_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3016085_3017276_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3017272_3018046_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3018075_3019269_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3019386_3020397_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3020414_3022451_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3022645_3023386_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3023484_3024435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3024477_3025653_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3025874_3027665_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3027677_3029339_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3029351_3032057_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3032349_3034104_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3034100_3034727_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3034723_3035575_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3035650_3037765_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3037951_3038566_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3038711_3038963_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3039032_3040415_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3040411_3043591_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3044398_3045316_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3045367_3046099_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3046158_3046731_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3048239_3049256_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3049393_3050443_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3050547_3051498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3051593_3052319_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3052529_3052910_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3053215_3054088_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3054095_3054476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3054629_3055904_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3057391_3058300_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3059097_3060162_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3061998_3063000_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3063222_3063864_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3063946_3065773_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3066016_3066946_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3066945_3067695_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3067766_3068681_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3068700_3069846_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3069906_3070818_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3070898_3071849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3071947_3072532_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3072566_3073556_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3073552_3074494_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3074490_3075711_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3075753_3076068_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3076259_3076619_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3076620_3078336_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3078523_3079195_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3079209_3080538_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3080534_3081434_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3081520_3082606_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3082598_3083732_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3083731_3086413_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3086783_3087365_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3087490_3088216_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3088212_3088890_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3089105_3090287_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3091059_3091242_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3091271_3092222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3092351_3092744_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3093020_3093932_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3094056_3095031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3095027_3095978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3096076_3097162_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3097259_3097670_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3098285_3100199_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3100334_3102947_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3102948_3103683_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3103846_3105028_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3105024_3105237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3105233_3106214_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3106259_3107087_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3107236_3109051_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3109105_3109489_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3109485_3110436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3110548_3110800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3111305_3112424_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3112543_3112756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3112915_3113137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3113189_3114140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	3134887	3189018	4100705	holin,transposase	Ostreococcus_lucimarinus_virus(25.0%)	41	NA	NA
WP_005012067.1|3134887_3135838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3137001_3138717_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3138727_3139219_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3139291_3140308_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3140475_3141255_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3141273_3141801_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3142094_3142364_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3142454_3144614_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3144734_3145454_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3145450_3146401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3146541_3147759_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3147752_3148364_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3148997_3149975_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3150118_3150865_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3150886_3151333_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3152120_3154352_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3154374_3155175_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3155456_3156689_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3156799_3157789_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3157819_3159208_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3160806_3161790_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3161986_3163003_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3163199_3164024_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3164101_3165025_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3165195_3166347_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3166350_3167382_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3167510_3168482_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3168506_3170591_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3170657_3171650_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3171758_3173093_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3173118_3175131_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3175127_3177176_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3177279_3177927_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3178067_3178562_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3178605_3179277_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3179291_3180785_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3180781_3183895_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3183907_3185014_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3185137_3185806_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3186026_3186977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3187059_3189018_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 24
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	3227461	3300623	4100705	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3227461_3228412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3228408_3229428_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3229437_3232146_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3232293_3232950_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3233048_3233999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3234146_3235040_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3235239_3236934_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3236968_3237895_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3237963_3239061_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3239079_3239943_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3239954_3240737_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3240733_3241852_+	M14 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930009.1|3241848_3243381_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3243421_3244429_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3244573_3245296_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3245311_3246334_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3246650_3247385_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3247469_3249215_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3249211_3249964_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3250008_3250965_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3251053_3251620_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3251627_3252488_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3252517_3253246_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3253277_3253961_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3254798_3255713_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3255777_3256686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3256776_3258201_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3258202_3259525_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3259521_3261660_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3261737_3266858_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3266958_3267267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3267336_3267894_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3267909_3269391_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3271561_3272899_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3272933_3274931_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3274948_3276997_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3277127_3277994_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3278262_3279228_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3279342_3280491_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3280915_3281227_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3281260_3281521_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3281670_3282804_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3282874_3284011_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3284176_3284971_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3285033_3285477_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3285592_3286543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3286644_3287073_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3287145_3289341_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|3289562_3290513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3290472_3290997_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3291128_3292100_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3292219_3294664_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3294679_3295270_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3295513_3296464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3296621_3297887_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3297920_3299018_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3299672_3300623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	3311910	3412018	4100705	protease,tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(14.81%)	106	NA	NA
WP_005012067.1|3311910_3312861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3313592_3313970_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3313954_3314656_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3314799_3315492_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3315491_3316595_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3316704_3319077_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3319073_3320633_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3320657_3321455_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3321486_3322632_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3322736_3324179_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3324181_3325411_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3327548_3328499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3329628_3330186_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3330161_3330512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931416.1|3331466_3332516_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3332515_3333205_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3333291_3333789_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3333820_3335137_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3335153_3336128_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3336164_3336623_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3336622_3337303_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3337305_3337734_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3337786_3339517_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3339582_3340155_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3340135_3340822_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3341177_3341849_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3342177_3342399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3342398_3342680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3342676_3343192_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3343191_3343743_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3343721_3343964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3343968_3344781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3344780_3345044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3345084_3345282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3345262_3345679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3345683_3349640_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3349632_3350022_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3350018_3350552_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3350619_3350979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3350988_3353601_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3353626_3353917_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3353934_3354264_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3354273_3354792_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3355046_3355547_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3355554_3355977_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3355973_3356372_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3356368_3356764_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3356763_3356952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3356965_3357448_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3357510_3357762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3358436_3359387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3359815_3360418_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3360540_3360783_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3360788_3361844_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3361872_3363291_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3363293_3364571_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3364557_3365043_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3365682_3366633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3366889_3367579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3367571_3367823_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3368377_3368989_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3369060_3369267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3369518_3370469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3370567_3371641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3371808_3372603_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3372642_3373167_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3373159_3374902_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3375111_3375870_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3375872_3376580_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3376596_3377478_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3377488_3378247_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3378215_3378971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3379040_3380459_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3380480_3381131_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3381264_3381600_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3381688_3382639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3382715_3384536_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3384540_3385614_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3385736_3386705_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3386778_3387690_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3387708_3388281_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3388361_3388910_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3388909_3390499_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3390568_3390808_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3390848_3391874_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3391939_3393121_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3393217_3393670_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3393679_3395020_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3395336_3396374_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3396755_3397115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3397198_3398140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3398214_3399165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3399458_3400553_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3400634_3401516_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3401537_3402377_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3402452_3403970_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3404066_3405167_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_054604391.1|3405183_3405606_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3405628_3405841_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3405887_3406808_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3406990_3407740_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3407742_3408072_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3408278_3409712_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3409723_3410107_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3410168_3410969_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3411067_3412018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011401	Bordetella pertussis strain B3621 chromosome	4100705	4021827	4075259	4100705	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4021827_4022778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4022947_4024174_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4024373_4025240_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4025232_4026195_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4026295_4027246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4027344_4028295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4028393_4029344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4029340_4030834_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4030830_4033938_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4033934_4037003_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4036999_4038250_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4038430_4039192_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4039224_4039875_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4039877_4040717_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4040957_4041701_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4041783_4042131_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4042228_4043071_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4043115_4044003_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4044029_4044218_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4044315_4045773_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4045759_4047286_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4047304_4047772_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4047771_4048794_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4048914_4049634_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4049709_4050810_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4050811_4052002_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4052121_4053138_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4053456_4054128_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4054124_4055033_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4055244_4055892_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4059743_4060820_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4060830_4061640_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4061729_4062503_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4062685_4063636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4063524_4064547_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4064536_4065691_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4065730_4067143_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4067267_4068134_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4068135_4068960_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4068956_4069718_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4069798_4070485_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4070658_4071666_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4071662_4072442_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4072499_4073762_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|4074308_4075259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
