The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	27282	70036	4108472	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	77634	136108	4108472	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	164894	225393	4108472	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023995109.1|184327_187990_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188050_188614_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188621_189044_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189071_189491_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189519_189966_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190092_190590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190744_193015_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193090_194296_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194394_195345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195447_196083_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196079_196973_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197367_198468_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198549_198924_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198983_201848_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201992_202733_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202802_204014_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204042_205011_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205624_206575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206731_207055_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207159_208200_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208205_208985_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209030_209327_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209352_209628_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209684_210329_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210328_211015_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211213_211996_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212046_212772_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212803_214153_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214264_215197_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215654_218450_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219043_221887_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222057_222777_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222815_223364_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223518_224418_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224442_225393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	233325	286913	4108472	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233325_234276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234362_235313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235309_236260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236358_237156_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238105_238516_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239537_240281_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240324_241368_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241538_243641_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245051_246008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246026_246518_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246514_247870_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247870_248569_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248565_249267_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249519_250569_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250674_251616_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251612_253502_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253588_254227_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254369_255755_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255685_256222_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256373_257765_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257781_258762_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258897_259881_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259945_260845_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260951_262706_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262713_263838_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263851_264832_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265562_266513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267072_267618_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267743_269321_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269336_270491_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270504_270630_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270626_272378_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272374_274054_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274116_274665_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275807_276086_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277129_278080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278066_278282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278357_278519_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279185_279635_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279644_280256_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280414_281263_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281288_282671_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282735_283377_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283516_283975_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283999_284776_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284829_285966_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285962_286913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	555298	614598	4108472	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555298_556249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557572_558349_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558383_560156_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560157_561060_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561184_561544_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561575_562538_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_010929591.1|562636_563587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563599_564535_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564594_565434_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565430_566600_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566596_567886_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567928_568303_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568417_569146_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569153_569858_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570121_571642_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571697_572261_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572279_573311_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573307_574096_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574271_575261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577017_577968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579190_580093_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580094_580949_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|580995_582105_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582115_582634_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582663_583296_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583367_584027_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584023_585163_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585512_586385_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586540_587278_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587280_588912_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589007_589997_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|589993_590704_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590799_591816_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592087_592714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592769_593897_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593902_599620_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600187_601132_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601320_602256_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602373_603945_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604024_605233_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605730_606648_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609008_609230_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609560_610577_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610661_610913_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610916_611732_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611844_612723_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612834_614598_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	620753	674494	4108472	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620753_621704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621799_622771_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622775_623456_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623593_623986_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624093_625110_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625349_626135_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626229_627639_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627649_628450_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628470_629241_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629283_629751_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629747_630698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632646_633525_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634451_637430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637783_638734_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638730_639819_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639854_640718_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641857_642247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642250_643033_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643066_643852_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644127_645267_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645263_646055_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646051_646801_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646797_647670_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647669_648671_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648667_649831_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649856_650540_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650493_651828_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651820_652915_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653681_654632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656572_657832_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657828_659367_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659363_660560_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660556_661933_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661944_662961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663029_664265_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664365_665160_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665529_665937_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666354_666627_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666796_667021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667208_668063_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668163_668466_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668510_669128_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669144_669453_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669449_671165_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671167_671785_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671885_672470_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672494_673139_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673543_674494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	723432	763382	4108472	tRNA,protease,integrase,transposase	Pseudomonas_phage(33.33%)	29	720680:720698	740568:740586
720680:720698	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723432_724029_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724025_724808_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724880_725972_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726251_727379_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727720_728767_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729277_732034_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732035_734987_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735002_736214_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736210_736411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736397_737348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737364_737859_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737862_738120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738663_739575_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739656_739941_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740724_741675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740568:740586	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742093_744658_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744702_746556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746888_748460_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749901_750852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750937_751678_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751904_752852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754239_755190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755383_756199_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756331_757771_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757784_758126_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758180_759836_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759987_760998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761130_761904_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762431_763382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	773309	821976	4108472	tRNA,transposase,protease,holin	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|773309_774260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774398_775151_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775425_777114_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777133_778393_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778407_779502_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779498_781562_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781637_782318_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782595_783969_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783970_784990_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785053_786025_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786089_787040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|787138_788089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788187_789030_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789029_789365_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789435_790854_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791133_792174_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792253_792505_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792615_793779_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794062_794917_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794913_795804_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795846_796758_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796784_797477_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797491_798472_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798484_800626_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800674_801643_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801633_802302_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802262_803198_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803194_804091_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804087_804810_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804800_804965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805138_805642_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805918_807034_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807176_807641_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807788_808328_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808349_809684_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809697_810003_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810427_811009_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811090_812041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812139_813090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813530_814436_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814491_816099_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816352_817858_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817872_818337_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818626_819577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819739_820270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820269_820581_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821025_821976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	997837	1101267	4108472	tRNA,transposase	Bacillus_virus(27.27%)	94	NA	NA
WP_003813026.1|997837_998953_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999053_999872_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999969_1000581_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000740_1002117_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002179_1002638_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002722_1003418_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003479_1003761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004323_1005076_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005120_1006197_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006193_1007144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007246_1007909_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008003_1008174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008526_1009528_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009530_1010727_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010747_1011551_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011631_1011928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011958_1012522_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012562_1013420_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013427_1014177_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014198_1015071_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015099_1015879_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015912_1016710_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019364_1019757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019750_1020611_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020614_1021577_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022353_1023043_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023903_1024854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025203_1026073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026143_1026839_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026828_1027338_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027334_1028555_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028502_1029405_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030291_1031578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031616_1032990_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033028_1033730_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034028_1035018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035118_1035580_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035595_1036144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036285_1037761_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037866_1038958_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038961_1039744_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039753_1040542_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041667_1042102_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042098_1043109_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043152_1044079_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044365_1044734_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044950_1045901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045945_1048372_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048420_1049113_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049185_1050385_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050402_1051308_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051423_1052353_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052378_1053725_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053737_1054502_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054515_1055298_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055490_1056441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056502_1057612_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058124_1058961_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059087_1059996_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1059992_1060943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061328_1061871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062906_1063857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064098_1064467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064512_1065637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066771_1067512_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067615_1068236_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068339_1069290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069286_1071395_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071539_1072199_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072230_1072695_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072970_1073156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073207_1073960_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073966_1075229_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075270_1076509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077586_1078714_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078724_1079552_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079538_1080405_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081771_1082176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082267_1083218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083587_1084499_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084513_1085224_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085220_1086465_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086466_1086901_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086929_1087235_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087333_1088284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088340_1089489_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089569_1090520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091051_1091849_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091896_1092550_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092506_1093595_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093759_1095985_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098262_1099159_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_010927663.1|1099177_1100128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1100316_1101267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1131653	1202624	4108472	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1131653_1132604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1132660_1133773_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1136156_1137107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1137697_1138474_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1138591_1138855_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1138955_1139960_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1140160_1141762_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1141787_1142546_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1142637_1143294_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1143384_1144149_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1144158_1144347_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1144402_1145446_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1145442_1145856_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1145852_1146473_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1146753_1147704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1147871_1149263_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1149335_1149914_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1150030_1151428_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1151543_1152749_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1152848_1153367_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1153461_1153707_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1153934_1154249_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1154347_1159528_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1159524_1161693_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1161748_1164064_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1164068_1165388_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1165406_1167080_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1167084_1167753_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1167909_1171731_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1172061_1173012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1173033_1174179_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1174327_1175257_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1175253_1176342_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1176338_1177142_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1177138_1177870_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1177927_1179217_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1179313_1179916_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1184469_1184808_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1185515_1185782_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1187488_1188439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1188435_1189767_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1191027_1193028_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1193020_1193662_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1193658_1194066_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1194062_1194863_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1194937_1195642_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1195673_1196468_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1196464_1197415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1197513_1198464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1198562_1198997_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1199079_1201416_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1201607_1202624_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1250018	1330893	4108472	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1250018_1250969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250965_1251916_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1252176_1253205_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1253284_1254583_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1254579_1255161_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1255473_1259520_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1259760_1267422_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1267418_1268369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1269508_1269982_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1270121_1270742_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1270877_1271678_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1271732_1272824_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1272845_1273289_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1273317_1273950_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1274060_1274477_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1274469_1275162_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1275268_1275643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1275719_1276529_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1276624_1277569_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1277607_1278579_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1278669_1279107_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1279165_1280047_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1281050_1281911_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1281943_1283326_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1283322_1284342_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1284714_1285209_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1285216_1285957_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1286037_1287642_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1287681_1288470_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1288595_1290761_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1291641_1292454_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1292466_1292775_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1292892_1294623_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1294624_1295827_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1295899_1296568_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1296689_1297157_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1297292_1298675_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1298671_1299796_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1299792_1302429_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1302844_1303795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1307541_1308153_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1308375_1309836_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1309932_1311525_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1311878_1312136_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1312137_1313478_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1313573_1314263_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1314275_1315706_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1317430_1318252_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1318262_1319834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1319862_1320840_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1320866_1321670_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1321666_1322461_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1322468_1323704_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1323717_1324131_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1324486_1324759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1324880_1325831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1326452_1328180_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1328291_1329650_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1329942_1330893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1450288	1514504	4108472	tRNA,transposase,protease	Salmonella_phage(16.67%)	59	NA	NA
WP_005013747.1|1450288_1451239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1451405_1451759_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1451771_1452134_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1452175_1452601_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1452803_1454060_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1454258_1455239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1455388_1456630_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1456728_1457679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1457687_1458383_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1461204_1461804_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1461814_1463980_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1464003_1465788_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1465787_1465877_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1466571_1466844_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1466843_1468910_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1468906_1469857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469955_1470906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1471021_1471354_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1471350_1472037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1472023_1472983_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1473015_1475385_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1475384_1476017_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1476118_1477459_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1477505_1478861_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1479151_1479388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1479575_1479893_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1480165_1480681_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1480951_1481707_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1482045_1482252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1482259_1482919_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1483213_1485418_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1485528_1486752_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1486874_1487849_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1487916_1489110_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1489124_1489925_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1489921_1491778_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1491774_1492380_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1492398_1493784_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1494509_1495736_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1495824_1496607_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1496705_1497656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1497682_1498456_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1498467_1499709_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1501525_1502353_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1502354_1503065_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1503061_1503661_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1503769_1504363_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1504414_1504597_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1504653_1505712_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1505711_1506698_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1506779_1507715_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1507716_1508469_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1508651_1508891_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1509080_1510310_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1510311_1510812_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1510808_1511408_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1511420_1511921_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1511920_1512979_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_004566381.1|1513016_1514504_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 14
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1744239	1792254	4108472	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_077108087.1|1744239_1745190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1745288_1747889_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1747995_1749000_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1749108_1750449_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1750489_1751518_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1751713_1752259_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1752255_1752816_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1752914_1753865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1753902_1754490_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1754507_1754891_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1756250_1757543_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1757677_1758718_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1758815_1759832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1760099_1760735_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1760872_1761631_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1761615_1762395_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1762412_1763297_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1763293_1764073_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1764099_1764777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1765065_1765818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1765936_1767337_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1767360_1767759_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1767934_1768135_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1768273_1769002_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1769135_1770551_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1770554_1771418_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1771430_1772180_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1772422_1774378_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1774359_1775028_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1775802_1776753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1776851_1777802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1777950_1778289_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1778346_1778508_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1778539_1778740_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1779005_1781579_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1781649_1784199_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1786749_1787238_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1787329_1788481_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1788534_1789356_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1789394_1790624_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1790752_1791193_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1791303_1792254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1853816	1913086	4108472	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1853816_1854767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1854891_1855701_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1855901_1856852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1858125_1859343_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1860399_1861302_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1861378_1862251_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1862381_1862750_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1862807_1863854_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1864049_1865306_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1865310_1866648_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1866797_1867754_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1867856_1868789_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1868904_1869225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1869217_1869577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1869624_1871199_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1871251_1872196_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1872213_1873044_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1873036_1874671_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1874667_1876023_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1876929_1878507_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1878510_1879785_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1879882_1880257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1881972_1883106_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1883143_1883749_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1883745_1884564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1884635_1887260_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1887246_1887501_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1887567_1888149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1888452_1888713_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1888878_1889502_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1889501_1890275_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1890271_1891480_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1891505_1891979_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1892052_1893003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1893101_1894052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1894150_1895500_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1896265_1897021_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1897113_1899996_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1900318_1900744_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1900771_1901920_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1901916_1902423_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1902438_1903725_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1903774_1905070_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1905071_1905710_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1905715_1906873_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1906899_1908255_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1908258_1909329_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1909467_1909704_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1909791_1910898_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1910863_1912168_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1912186_1913086_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1923326	1967649	4108472	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1923326_1924277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1924375_1925326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1925525_1926611_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1926626_1927388_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1927384_1928308_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1928406_1928931_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1928939_1929683_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1929778_1930018_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1930031_1930184_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1930269_1931760_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1931851_1932790_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1932786_1932963_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1932965_1933628_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1935249_1935393_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1935389_1936364_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1936530_1937481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1937477_1938752_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1938855_1940049_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1940045_1940699_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1940695_1942132_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1942119_1942479_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1943293_1943434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1943451_1944402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1945447_1947313_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1947570_1949091_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1949178_1949829_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1950777_1952073_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1952094_1952979_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1953077_1953953_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1953942_1954299_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1954429_1955404_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1955533_1955713_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1955810_1956335_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1956345_1957182_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1957294_1957666_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1957662_1958214_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1958229_1959921_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1959969_1960650_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1960897_1961362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1961531_1962461_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1962473_1963121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1963194_1965012_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1965095_1966046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1966698_1967649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	1997422	2061791	4108472	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1997422_1998373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1998594_1999545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1999643_2000609_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2000746_2001646_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2004240_2005728_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2005738_2006935_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2007007_2008327_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2008323_2009199_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2009229_2010378_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2010395_2010710_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2010731_2011454_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2011453_2012272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2012276_2012804_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2012809_2014066_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2014424_2015564_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2015641_2016514_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2017384_2018335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2018294_2018930_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2019289_2020612_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2020930_2021752_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2023176_2023749_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2023788_2025618_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2025580_2026639_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2026676_2027138_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2027222_2027969_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2029459_2032690_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2032756_2034088_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2034340_2034715_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2034817_2035996_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2036006_2036597_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2036707_2037514_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2037539_2038334_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2039334_2040309_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2040467_2040980_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2041136_2042108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2043852_2044659_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2044655_2045957_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2045907_2046672_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2046785_2047556_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2047640_2048828_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2048900_2049275_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2049375_2050638_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2050634_2051492_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2051664_2052666_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2053117_2054068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2055631_2056783_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2057151_2057388_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2057451_2057619_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2057732_2059628_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2059791_2060742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2060840_2061791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2248259	2309607	4108472	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2248259_2249210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2249326_2250046_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2250218_2251205_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2251205_2251688_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2251691_2252975_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2252971_2253910_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2253906_2255616_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2255625_2256873_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2258483_2259773_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2260910_2261684_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2262345_2263089_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2263163_2263904_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2264099_2264936_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2264986_2265757_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2265806_2266859_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2266855_2267482_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2267478_2268513_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2268691_2269708_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2269806_2270757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2273497_2274787_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2274905_2275343_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2275386_2276595_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2276741_2277206_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2277229_2278180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2279164_2279938_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2279934_2280933_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2281017_2281794_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2281949_2283554_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2283934_2285059_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2285185_2285809_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2285805_2287707_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2287755_2288550_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2288562_2289564_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2289560_2290010_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2290059_2290908_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2291005_2291548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2291591_2292542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2292697_2293024_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2293020_2293302_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2293301_2293781_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2293777_2295406_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2295402_2295747_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2295746_2298680_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2299838_2300789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2300887_2301184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2301290_2302208_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2302212_2302926_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2302939_2303911_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2305660_2306011_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2306014_2307202_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2307640_2308363_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2308656_2309607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2330398	2401552	4108472	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2330398_2331349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2331901_2333527_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2333576_2334611_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2334613_2335960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2335956_2337471_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2337461_2338472_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2338945_2339887_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2339895_2340864_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2342403_2343372_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2343549_2344539_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2344585_2345344_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2345533_2346271_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2346369_2347320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2347504_2348287_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2348280_2348982_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2349221_2349824_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2351150_2352101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2352097_2353654_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2353646_2354420_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2354478_2355429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2355510_2356686_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2356699_2358757_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2358753_2359779_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2359790_2361080_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2361102_2362200_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2362196_2363087_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2363083_2365168_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2365199_2366369_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2366410_2367151_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2367150_2367921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2368776_2369562_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2369588_2371673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2371840_2373796_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2374119_2374620_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2374718_2376245_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2376382_2377270_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2377284_2378238_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2378289_2380380_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2380395_2380782_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2383475_2384279_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2385572_2386475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2386539_2387316_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2387637_2388687_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2388810_2390481_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2390485_2391280_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2391378_2392329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2392348_2393254_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2393331_2394030_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2394189_2395134_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2395143_2396631_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2396630_2397698_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2397761_2399174_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2399359_2400580_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2400601_2401552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2497380	2556161	4108472	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2497380_2499330_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2499717_2500494_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2500499_2500892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2501313_2502264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2502260_2503358_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2503389_2504340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2506121_2507363_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2507374_2508148_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2508174_2509125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509604_2510261_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510275_2511943_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511945_2512575_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512786_2513881_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514025_2514838_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2514841_2516425_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2516595_2517726_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517912_2518989_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519070_2519721_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519735_2521139_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521422_2522241_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2522237_2522942_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523841_2524957_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2524990_2525365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525387_2526545_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526557_2526791_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527425_2530395_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530409_2530619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530770_2531400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2531396_2533454_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533510_2534191_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534187_2534748_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534754_2535852_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536004_2536598_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536594_2537887_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537900_2538443_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538452_2539289_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539322_2540384_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540425_2541478_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541493_2541796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541937_2542888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543066_2544761_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544757_2545843_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545890_2546790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546800_2547445_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548466_2551709_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551719_2552874_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553100_2554063_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554161_2555112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555210_2556161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2608697	2675197	4108472	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608697_2609648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610017_2610590_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610592_2611603_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611595_2612096_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612106_2612448_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2612516_2613251_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613267_2613537_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613559_2614348_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614394_2615411_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615627_2617070_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617248_2618868_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2618988_2620809_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620887_2622420_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2622453_2624100_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624169_2625192_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625209_2626343_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626345_2627035_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627034_2627820_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627863_2628628_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628666_2630088_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630153_2630858_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630905_2631325_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631337_2631745_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631928_2632639_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632765_2633056_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633073_2633556_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638061_2639216_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639521_2640538_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640784_2641573_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641639_2642320_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642316_2643087_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643185_2644136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644191_2645109_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645119_2646298_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646317_2647313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648901_2649510_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649497_2650538_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650555_2651518_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651514_2652708_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652704_2653502_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653527_2654514_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654532_2656572_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2656773_2657454_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657467_2658379_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658375_2658954_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659092_2659998_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660005_2663425_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663412_2666013_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666968_2667601_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2667994_2668753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2668749_2669952_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670139_2671090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2671997_2673143_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673129_2673885_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674001_2674181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674246_2675197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2838811	2904395	4108472	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2838811_2839762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2839860_2840811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2841013_2842003_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2842086_2842440_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2842517_2843126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2844799_2845378_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2845402_2846356_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2846395_2847313_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2847434_2848361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2848368_2849115_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2849441_2850383_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2850609_2852307_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2852741_2854163_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2854316_2855096_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2855220_2856099_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2856204_2857329_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2857374_2858337_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2858329_2859184_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2859291_2859702_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2859698_2860649_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2860747_2861629_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2861706_2863086_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2863124_2863970_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2863985_2864300_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2864332_2864869_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2865041_2865617_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2865719_2866457_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2866524_2868162_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2868269_2869025_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2869012_2869975_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2870082_2870877_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2870938_2873014_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2873178_2875554_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2875634_2876990_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2878468_2879191_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2879245_2880229_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2880358_2881309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2881305_2882208_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2882295_2883054_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2883066_2884158_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2884255_2885683_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2885912_2887127_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2887172_2890043_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2892453_2892942_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2893067_2895764_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2895918_2898201_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2898365_2898998_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2899096_2900047_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2900093_2900648_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2900715_2901561_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2901630_2902599_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2902598_2904395_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2921965	2982992	4108472	holin,tRNA,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2921965_2923486_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2923528_2923831_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2923827_2924460_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2924538_2926404_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2926400_2927195_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2927223_2928339_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2929243_2930122_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2930121_2930946_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2931113_2932064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2932276_2935126_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2935107_2935836_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2935976_2937440_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2937436_2937808_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2937825_2939139_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2939175_2939634_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2939746_2940697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2940693_2941707_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2941846_2942833_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2943191_2943899_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2944479_2945430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2945581_2946184_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2946202_2946835_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2946879_2947131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2947072_2948959_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2948977_2949820_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2949816_2951175_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2951395_2952190_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2952420_2953914_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2954149_2956231_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2956425_2957466_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2957600_2958617_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2958638_2959496_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2959540_2960317_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2960684_2961635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2961661_2962126_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2963332_2965621_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2965737_2966610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2966652_2967807_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2967841_2968672_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2968755_2970300_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2970342_2970702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2970703_2971117_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2971157_2971475_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2971559_2972276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2972539_2973961_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2974027_2976775_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2977107_2978124_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2978459_2979101_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2979191_2980628_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2980785_2981859_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2981855_2982992_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 24
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	2986745	3122951	4108472	tRNA,transposase	uncultured_Caudovirales_phage(10.0%)	117	NA	NA
WP_010931363.1|2986745_2987762_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2988699_2990127_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2990123_2991146_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2991135_2991609_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2991749_2992637_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2992633_2994277_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2994273_2995281_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2996111_2997128_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2997227_2997860_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2997868_2998258_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2998310_2999363_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3000226_3001933_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3002006_3002507_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3002521_3004579_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3004605_3004899_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3005000_3005948_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3005960_3006836_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3006956_3007517_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3007551_3007875_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3008310_3009048_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3009346_3010297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3010540_3010804_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3010877_3011159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3011175_3012036_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3012032_3012368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3012421_3013072_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3014752_3015697_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3015742_3016060_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3016062_3017001_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3017178_3017664_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3017682_3018231_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3018262_3018415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3019744_3020386_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3020540_3022889_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3022885_3023824_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3023849_3025040_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3025036_3025810_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3025839_3027033_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3027150_3028161_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3028178_3030215_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3030409_3031150_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3031248_3032199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3032241_3033417_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3033638_3035429_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3035441_3037103_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3037115_3039821_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3040113_3041868_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3041864_3042491_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3042487_3043339_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3043468_3045529_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3045715_3046330_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3046475_3046727_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930121.1|3048173_3051353_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3052160_3053078_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3053129_3053861_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3053920_3054493_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3056001_3057018_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3057155_3058205_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3058309_3059260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3059358_3060309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3060404_3061130_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3061340_3061721_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3062026_3062899_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3062906_3063287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3063440_3064715_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3066202_3067111_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3067908_3068973_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3070809_3071844_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3072033_3072675_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3072757_3074584_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3074827_3075757_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3075756_3076506_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3076577_3077492_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3077511_3078657_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3078717_3079629_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3079709_3080660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3080758_3081343_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3081377_3082367_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3082363_3083305_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3083301_3084522_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3084564_3084879_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3085070_3085430_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3085431_3087147_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3087334_3088006_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3088020_3089349_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3089345_3090245_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3090331_3091417_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3091409_3092540_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3092542_3095224_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3095594_3096176_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3096301_3097027_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3097023_3097701_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3097916_3099098_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3099870_3100053_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3100082_3101033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3101162_3101555_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3101831_3102743_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3102867_3103842_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3103838_3104789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3104887_3105973_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3106070_3106481_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3107096_3109010_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3109145_3111758_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3111759_3112494_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3112657_3113839_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3113835_3114048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3114044_3115025_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3115070_3115898_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3116047_3117862_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3117916_3118300_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3118296_3119247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3119359_3119611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3119804_3120020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3120116_3121235_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3121354_3121567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3121726_3121948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3122000_3122951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	3236272	3305275	4108472	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_010930048.1|3236272_3237223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3237219_3238239_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3238248_3240957_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3241104_3241761_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3241859_3242810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3242957_3243851_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3244050_3245745_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3245779_3246706_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3246774_3247872_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3247890_3248754_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3248765_3249548_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3249544_3250663_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3250659_3252192_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3252232_3253240_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3253384_3254107_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3254122_3255145_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3255461_3256196_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3256280_3258026_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3258022_3258775_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3258819_3259776_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3259864_3260431_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3260438_3261299_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3261328_3262057_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3262088_3262772_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3263609_3264524_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3264588_3265497_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3265587_3267012_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3267013_3268336_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3268332_3270471_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3270548_3275669_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3275769_3276078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3276147_3276705_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3276720_3278202_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3278256_3280110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3280372_3281710_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3281744_3283742_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3283759_3285808_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3285938_3286805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3287073_3288039_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3288153_3289302_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3289726_3290038_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3290071_3290332_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3290481_3291615_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3291685_3292822_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3292987_3293782_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3293844_3294288_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3294403_3295354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3295476_3295884_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3295956_3298152_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3298373_3299324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3299283_3299808_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3299939_3300911_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3301030_3303475_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3303490_3304081_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3304324_3305275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	3320721	3420834	4108472	transposase,protease,terminase,tRNA,tail	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3320721_3321672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3322403_3322781_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3322765_3323467_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3323610_3324303_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3324302_3325406_-	phosphotransferase	NA	NA	NA	NA	NA
WP_077069048.1|3325515_3327888_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3327884_3329444_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3329468_3330266_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3330297_3331443_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3331547_3332990_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3332992_3334222_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3336359_3337310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3338439_3338997_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3338972_3339323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3339491_3340286_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3340282_3341332_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3341331_3342021_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3342107_3342605_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3342636_3343953_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3343969_3344944_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3344980_3345439_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3345438_3346119_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3346121_3346550_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3346602_3348333_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3348398_3348971_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3348951_3349638_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3349993_3350665_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3350993_3351215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3351214_3351496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3351492_3352008_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3352007_3352559_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3352537_3352780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3352784_3353597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3353596_3353860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3353900_3354098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3354078_3354495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3354499_3358456_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3358448_3358838_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3358834_3359368_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3359435_3359795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3359804_3362417_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3362442_3362733_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3362750_3363080_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3363089_3363608_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3363862_3364363_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3364370_3364793_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3364789_3365188_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3365184_3365580_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3365579_3365768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3365781_3366264_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3366326_3366578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3367252_3368203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3368631_3369234_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3369356_3369599_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3369604_3370660_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3370688_3372107_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3372109_3373387_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3373373_3373859_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3374498_3375449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3375705_3376395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3376387_3376639_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3377193_3377805_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3377876_3378083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3378334_3379285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3379383_3380457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3380624_3381419_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3381458_3381983_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3381975_3383718_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3383927_3384686_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3384688_3385396_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3385412_3386294_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3386304_3387063_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3387031_3387787_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3387856_3389275_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3389296_3389947_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3390080_3390416_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3390504_3391455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3391531_3393352_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3393356_3394430_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3394552_3395521_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3395594_3396506_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3396524_3397097_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3397177_3397726_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3397725_3399315_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3399384_3399624_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3399664_3400690_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3400755_3401937_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3402033_3402486_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3402495_3403836_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3404152_3405190_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3405571_3405931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3406014_3406956_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3407030_3407981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3408274_3409369_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3409459_3410332_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3410353_3411193_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3411268_3412786_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3412882_3413983_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3413999_3414422_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3414444_3414657_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3414703_3415624_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3415806_3416556_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3416558_3416888_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3417175_3418528_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3418539_3418923_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3418984_3419785_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3419883_3420834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011440	Bordetella pertussis strain B1838 chromosome, complete genome	4108472	4007540	4072452	4108472	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4007540_4008026_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008114_4008252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008244_4009225_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009491_4010301_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010340_4011021_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011014_4011473_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011484_4011847_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011929_4012613_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012668_4012977_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012995_4013310_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013306_4015781_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015788_4017180_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017176_4017362_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017340_4018042_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018038_4018860_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018840_4019965_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019957_4020977_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021182_4022073_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022317_4023109_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023191_4023566_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023543_4024953_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024945_4026328_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026662_4028267_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028344_4029316_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029326_4030253_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030643_4031594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031763_4032990_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033189_4034056_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034048_4035011_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035111_4036062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036160_4037111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037209_4038160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038156_4039650_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039646_4042754_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042750_4045819_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045815_4047066_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047246_4047999_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048040_4048685_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048693_4049674_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049773_4050517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050599_4050947_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051044_4051887_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051931_4052819_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052845_4053034_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053131_4054589_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054575_4056102_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056120_4056588_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056587_4057610_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057730_4058471_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058525_4059626_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059627_4060818_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060937_4061954_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062272_4062944_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062940_4063849_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064060_4064708_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068568_4069636_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069646_4070456_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070545_4071319_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4071501_4072452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
