assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001308285.1_ASM130828v1	NZ_CP012381	Lactobacillus helveticus strain CAUH18 chromosome, complete genome	1	596136-598100	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	 Type I-U?,Type I-C,Type I-U	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	32,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	27,28,29,27	29	TypeI-U?,TypeI-C,TypeI-U	cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	NA,NA|174aa|down_7|NZ_CP012381.1_607926_608448_+,NA|177aa|down_8|NZ_CP012381.1_608598_609129_+	NA|514aa|up_9|NZ_CP012381.1_581416_582958_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|420aa|up_8|NZ_CP012381.1_582970_584230_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|420aa|up_7|NZ_CP012381.1_586361_587621_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas3|845aa|up_6|NZ_CP012381.1_587867_590402_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|NZ_CP012381.1_590416_591160_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|658aa|up_4|NZ_CP012381.1_591159_593133_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|284aa|up_3|NZ_CP012381.1_593135_593987_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|219aa|up_2|NZ_CP012381.1_593989_594646_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NZ_CP012381.1_594642_595674_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP012381.1_595683_595974_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_0|NZ_CP012381.1_598698_601362_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_1|NZ_CP012381.1_601370_602201_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_2|NZ_CP012381.1_602197_602800_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|156aa|down_3|NZ_CP012381.1_602802_603270_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|444aa|down_4|NZ_CP012381.1_603272_604604_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|303aa|down_5|NZ_CP012381.1_604635_605544_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_6|NZ_CP012381.1_605834_607769_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|174aa|down_7|NZ_CP012381.1_607926_608448_+	NA	NA|177aa|down_8|NZ_CP012381.1_608598_609129_+	NA	NA|417aa|down_9|NZ_CP012381.1_609592_610843_+	pfam04087, DUF389, Domain of unknown function (DUF389)
GCF_001308285.1_ASM130828v1	NZ_CP012381	Lactobacillus helveticus strain CAUH18 chromosome, complete genome	2	719184-719395	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	Orphan	CTACGTATTCTCCACGTATGTGGAGGTGATCCTTG,GTATTCTCCACGTATGTGGAGGTGATCCT,GTATTCTCCACGTATGTGGAGGTGATCCT	35,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	2,3,3	3	Orphan	cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	NA|165aa|up_9|NZ_CP012381.1_712781_713276_+,NA|78aa|up_5|NZ_CP012381.1_715317_715551_-,NA|84aa|up_2|NZ_CP012381.1_717310_717562_-,NA|46aa|up_1|NZ_CP012381.1_717653_717791_-,NA|67aa|down_0|NZ_CP012381.1_719546_719747_+,NA|97aa|down_4|NZ_CP012381.1_721858_722149_+	NA|165aa|up_9|NZ_CP012381.1_712781_713276_+	NA	NA|111aa|up_8|NZ_CP012381.1_713403_713736_+	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|227aa|up_7|NZ_CP012381.1_713739_714420_+	PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional	NA|285aa|up_6|NZ_CP012381.1_714419_715274_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|78aa|up_5|NZ_CP012381.1_715317_715551_-	NA	NA|207aa|up_4|NZ_CP012381.1_715663_716284_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|209aa|up_3|NZ_CP012381.1_716650_717277_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|84aa|up_2|NZ_CP012381.1_717310_717562_-	NA	NA|46aa|up_1|NZ_CP012381.1_717653_717791_-	NA	NA|350aa|up_0|NZ_CP012381.1_717977_719027_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|67aa|down_0|NZ_CP012381.1_719546_719747_+	NA	NA|109aa|down_1|NZ_CP012381.1_719866_720193_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|295aa|down_2|NZ_CP012381.1_720194_721079_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|221aa|down_3|NZ_CP012381.1_721093_721756_-	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|97aa|down_4|NZ_CP012381.1_721858_722149_+	NA	NA|220aa|down_5|NZ_CP012381.1_723021_723681_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|225aa|down_6|NZ_CP012381.1_723661_724336_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|down_7|NZ_CP012381.1_724345_725086_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|287aa|down_8|NZ_CP012381.1_725098_725959_+	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold	NA|105aa|down_9|NZ_CP012381.1_726005_726320_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
GCF_001308285.1_ASM130828v1	NZ_CP012381	Lactobacillus helveticus strain CAUH18 chromosome, complete genome	3	1657944-1658123	4	PILER-CR	no		cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	Orphan	ATGTGGGATTTGAACCCACGC	21	0	0	NA	NA	NA	2	2	Orphan	cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	NA,NA|128aa|down_2|NZ_CP012381.1_1660997_1661381_-,NA|115aa|down_4|NZ_CP012381.1_1663848_1664193_-	NA|541aa|up_9|NZ_CP012381.1_1641345_1642968_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|361aa|up_8|NZ_CP012381.1_1643071_1644154_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|490aa|up_7|NZ_CP012381.1_1645496_1646966_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|177aa|up_6|NZ_CP012381.1_1647256_1647787_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|443aa|up_5|NZ_CP012381.1_1647799_1649128_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|279aa|up_4|NZ_CP012381.1_1649182_1650019_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|272aa|up_3|NZ_CP012381.1_1652013_1652829_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|159aa|up_2|NZ_CP012381.1_1652868_1653345_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|171aa|up_1|NZ_CP012381.1_1655809_1656322_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|489aa|up_0|NZ_CP012381.1_1656329_1657796_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|167aa|down_0|NZ_CP012381.1_1658291_1658792_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|469aa|down_1|NZ_CP012381.1_1659466_1660873_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|128aa|down_2|NZ_CP012381.1_1660997_1661381_-	NA	NA|393aa|down_3|NZ_CP012381.1_1662609_1663788_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|115aa|down_4|NZ_CP012381.1_1663848_1664193_-	NA	NA|67aa|down_5|NZ_CP012381.1_1664527_1664728_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|444aa|down_6|NZ_CP012381.1_1664822_1666154_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|308aa|down_7|NZ_CP012381.1_1666249_1667173_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|457aa|down_8|NZ_CP012381.1_1667614_1668985_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|459aa|down_9|NZ_CP012381.1_1669350_1670727_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC
GCF_001308285.1_ASM130828v1	NZ_CP012381	Lactobacillus helveticus strain CAUH18 chromosome, complete genome	4	1790471-1790625	3	CRISPRCasFinder	no	DEDDh,Cas14u_CAS-V,cas14j	cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	Unclear	GGCTCTATAATTTTTCCTGTTGATGACTTATCAATATGATAAGCTGTTAACAG	53	1	1	1790524-1790572	NZ_CP012381.1_1509834-1509882	NA	1	1	TypeV	cas14j,cas3,csa3,cas2,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V,RT	NA|274aa|up_9|NZ_CP012381.1_1778513_1779335_-,NA|66aa|up_8|NZ_CP012381.1_1779604_1779802_-,NA|117aa|up_7|NZ_CP012381.1_1779785_1780136_-,NA|97aa|up_6|NZ_CP012381.1_1781141_1781432_+,NA|169aa|down_2|NZ_CP012381.1_1793418_1793925_-,NA|52aa|down_8|NZ_CP012381.1_1799938_1800094_+	NA|274aa|up_9|NZ_CP012381.1_1778513_1779335_-	NA	NA|66aa|up_8|NZ_CP012381.1_1779604_1779802_-	NA	NA|117aa|up_7|NZ_CP012381.1_1779785_1780136_-	NA	NA|97aa|up_6|NZ_CP012381.1_1781141_1781432_+	NA	NA|217aa|up_5|NZ_CP012381.1_1782597_1783248_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|83aa|up_4|NZ_CP012381.1_1783532_1783781_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|239aa|up_3|NZ_CP012381.1_1783910_1784627_-	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|335aa|up_2|NZ_CP012381.1_1786795_1787800_-	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains	NA|281aa|up_1|NZ_CP012381.1_1788520_1789363_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|40aa|up_0|NZ_CP012381.1_1789548_1789668_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|426aa|down_0|NZ_CP012381.1_1790712_1791990_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|426aa|down_1|NZ_CP012381.1_1792080_1793358_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|169aa|down_2|NZ_CP012381.1_1793418_1793925_-	NA	NA|94aa|down_3|NZ_CP012381.1_1793914_1794196_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|341aa|down_4|NZ_CP012381.1_1795285_1796308_-	pfam17966, Mub_B2, Mub B2-like domain	NA|338aa|down_5|NZ_CP012381.1_1796614_1797628_-	pfam08363, GbpC, Glucan-binding protein C	NA|354aa|down_6|NZ_CP012381.1_1797602_1798664_-	PRK10811, rne, ribonuclease E; Reviewed	NA|247aa|down_7|NZ_CP012381.1_1798857_1799598_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|52aa|down_8|NZ_CP012381.1_1799938_1800094_+	NA	Cas14u_CAS-V|414aa|down_9|NZ_CP012381.1_1800194_1801436_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
