The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	110244	183842	4787723	transposase,plate,protease,integrase,tail,capsid,tRNA	Burkholderia_virus(38.1%)	88	102748:102764	159556:159572
102748:102764	attL	TTTATCCAGCGCCAGTC	NA	NA	NA	NA
WP_000502119.1|110244_110703_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|110659_110842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001766314.1|111235_111487_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|111755_112577_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|112611_112941_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|112927_113290_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001118268.1|113706_114741_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|114915_116304_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|116314_117844_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|118370_119315_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|119496_119886_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_001315282.1|119857_120307_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_010989166.1|120299_120515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|120504_120735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|120731_121415_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_153781233.1|121411_121612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|121619_122003_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|121999_122302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|122311_122584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|122872_123403_-	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|123430_123700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|123702_124869_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990529.1|124879_126649_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000567456.1|126652_126817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001765083.1|126826_127258_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_100208317.1|127253_127850_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000793143.1|128093_128444_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104436.1|128446_129175_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000264664.1|129158_129809_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|129805_130132_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|130131_130443_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|130442_130988_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_172841887.1|131038_132580_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.4	4.5e-183
WP_000090679.1|132579_134076_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117561.1|134056_134878_+|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000135517.1|134880_135339_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|135553_136669_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286905.1|136683_137637_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_000537457.1|137646_137985_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|137986_138433_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|138432_138897_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000666498.1|138896_139148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|139137_140565_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_162828734.1|140561_141086_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000110118.1|141088_141370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084229.1|141467_141803_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|141747_141885_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|141978_144444_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|144443_145328_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000478221.1|145327_145540_+|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|145527_146682_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|146678_147206_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|147262_147610_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|147600_148704_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000852584.1|148696_149275_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_000002046.1|149277_150303_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
WP_024134057.1|150313_150775_+|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	53.9	5.9e-38
WP_024131174.1|150785_151262_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001057643.1|151268_151886_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_001802272.1|151885_152389_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_024131173.1|152399_152873_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	53.0	4.3e-36
WP_001165548.1|152944_153517_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|153797_155180_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|155241_155577_-	GlpM family protein	NA	NA	NA	NA	NA
WP_001080045.1|155703_156435_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000824321.1|156915_158067_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_000928668.1|158219_159926_+	amidohydrolase	NA	NA	NA	NA	NA
159556:159572	attR	GACTGGCGCTGGATAAA	NA	NA	NA	NA
WP_001681605.1|160036_161338_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|161413_162343_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|162339_163743_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|163910_165557_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|165756_166932_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|167034_168543_+	YdgA family protein	NA	NA	NA	NA	NA
WP_000565566.1|169248_170250_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_000998242.1|170323_171364_-	oxidoreductase	NA	NA	NA	NA	NA
WP_031608772.1|171571_171697_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|171995_172211_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|172299_172740_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|172816_173398_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|173397_173976_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|173968_175990_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|175990_177049_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|177052_177673_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|177675_178368_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030324.1|178367_179003_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|179603_181109_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|181213_181819_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|182567_183842_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 2
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	364880	369292	4787723		Escherichia_phage(50.0%)	6	NA	NA
WP_000497451.1|364880_365120_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_001529135.1|365992_366802_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|366874_367252_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|367399_367942_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|368133_368862_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|368878_369292_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 3
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	573204	580438	4787723		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|573204_574635_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|574708_575404_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|575483_575795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|576445_577630_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|577890_578079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|578089_578302_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|578747_580016_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|580018_580438_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 4
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	664180	674687	4787723		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|664180_665494_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|665520_666600_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|666604_667378_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|667393_668368_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|668373_668925_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|668925_669804_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|669851_670751_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|670750_671836_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|672212_673106_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|673283_674687_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 5
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	750579	759750	4787723	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|750579_752613_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|752853_753312_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|753483_754014_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|754070_754538_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598632.1|754584_755304_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_024135205.1|755300_756986_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.9	5.3e-278
WP_001240415.1|757208_757940_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|757999_758107_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|758087_758819_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|758802_759750_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 6
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	994257	1000288	4787723		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|994257_995199_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|996441_996831_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|996799_997054_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|997070_998993_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|999982_1000126_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|1000141_1000288_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 7
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	1658836	1666507	4787723	integrase	Enterobacteria_phage(33.33%)	7	1653313:1653326	1664716:1664729
1653313:1653326	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
WP_000468230.1|1658836_1659076_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_000214423.1|1659091_1659658_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000493739.1|1659933_1661097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700163.1|1661086_1662145_+	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000573583.1|1662141_1663218_+	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
WP_000772672.1|1663280_1664546_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000152561.1|1665016_1666507_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
1664716:1664729	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
>prophage 8
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	1805467	1884406	4787723	plate,portal,integrase,capsid,tail,lysis,head,terminase	Salmonella_phage(83.33%)	88	1802393:1802408	1895406:1895421
1802393:1802408	attL	TCTCCCGCCCTTTGAC	NA	NA	NA	NA
WP_000954536.1|1805467_1806727_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|1807037_1808321_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|1809301_1810084_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_162009227.1|1810353_1810548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|1810940_1811162_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|1811158_1811620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|1812166_1813840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989300.1|1813920_1816206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|1816509_1816761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|1816842_1817295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000622308.1|1817474_1817963_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|1817959_1818253_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|1818679_1819693_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|1819856_1821446_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001120833.1|1821429_1822941_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_001210944.1|1823794_1824334_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|1824578_1825856_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|1825858_1826905_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_010989299.1|1826928_1829424_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000632616.1|1829423_1831160_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|1831204_1832272_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|1832281_1833076_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|1833101_1833797_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|1833819_1835124_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000052242.1|1835143_1837114_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000354257.1|1837415_1838162_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|1838161_1839052_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001681810.1|1839062_1839320_-	YjhX family toxin	NA	NA	NA	NA	NA
WP_000027757.1|1840426_1841452_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|1841455_1842088_-	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|1842204_1842447_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|1842479_1842989_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|1842996_1843197_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963478.1|1843160_1843502_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	98.2	1.7e-55
WP_001244240.1|1843569_1843803_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|1843802_1844030_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|1844026_1844611_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|1844607_1845468_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_000301193.1|1845458_1847867_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_001154438.1|1848034_1848223_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|1848234_1848468_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|1848563_1848782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|1848791_1849856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|1849852_1850917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|1850936_1851632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|1851680_1852724_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|1852723_1854490_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|1854632_1855466_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_000730751.1|1855482_1856547_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000059175.1|1856550_1857201_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|1857294_1857759_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|1857758_1857962_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|1857965_1858181_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|1858161_1858671_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|1858675_1859053_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_024131238.1|1859049_1859478_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001039961.1|1859573_1860005_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_000343944.1|1859997_1860444_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|1860512_1861091_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|1861087_1861447_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268327.1|1861433_1862342_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_001086816.1|1862334_1862940_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104806.1|1862936_1864556_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_000006337.1|1864562_1864970_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|1865167_1865890_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|1866103_1866322_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|1866424_1867597_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|1867606_1868122_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_001280965.1|1868176_1868479_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|1868493_1868613_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_161976233.1|1868839_1871386_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000980405.1|1871385_1871871_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001011750.1|1871867_1872968_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_001775272.1|1873035_1873254_+	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001039750.1|1873340_1873718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|1873937_1875212_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|1875343_1875613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|1875712_1876039_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022217.1|1876113_1877013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|1877086_1877995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|1878066_1880016_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000115421.1|1880104_1880563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|1880640_1880937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|1880933_1881386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|1881403_1881613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|1881983_1882364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020123.1|1882459_1882762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907593.1|1883485_1884406_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
1895406:1895421	attR	TCTCCCGCCCTTTGAC	NA	NA	NA	NA
>prophage 9
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	2177273	2215331	4787723	transposase,plate,portal,integrase,capsid,tail,lysis,head,terminase	Salmonella_phage(78.57%)	48	2172237:2172251	2184403:2184417
2172237:2172251	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|2177273_2178920_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|2179059_2179158_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|2179783_2180836_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|2181024_2181216_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|2181231_2181801_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|2181926_2182148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|2182180_2182690_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|2182697_2182994_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|2183111_2183453_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|2183520_2183754_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|2183753_2183981_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|2183977_2184835_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
2184403:2184417	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|2184831_2187246_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|2187399_2187588_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|2187655_2187955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|2188063_2188942_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|2189555_2190470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|2190466_2191207_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|2191241_2192279_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|2192278_2194045_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|2194187_2195021_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|2195037_2196096_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|2196099_2196750_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|2196845_2197310_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|2197309_2197513_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|2197516_2197732_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|2197712_2198225_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|2198226_2198604_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|2198600_2199029_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|2199124_2199556_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|2199548_2199995_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|2200063_2200642_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|2200638_2200998_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|2200984_2201893_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|2201885_2202491_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104804.1|2202487_2204002_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_000805568.1|2204001_2204595_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|2204566_2205007_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_000905046.1|2205435_2206002_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|2206144_2207317_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|2207326_2207842_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|2207896_2208199_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|2208213_2208333_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|2208325_2211403_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980381.1|2211399_2211885_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|2211881_2212982_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|2213072_2213291_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|2214872_2215331_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	3208106	3244218	4787723	transposase,bacteriocin,protease,integrase,tRNA	Acinetobacter_phage(33.33%)	39	3197739:3197753	3231496:3231510
3197739:3197753	attL	CCATGCCAGCATCAA	NA	NA	NA	NA
WP_000421096.1|3208106_3208385_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|3208627_3208894_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|3208890_3209208_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014341481.1|3210328_3210673_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_001681938.1|3210857_3211142_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|3211483_3212191_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|3214801_3216058_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|3216274_3217360_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|3217472_3217748_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|3217775_3218828_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|3218982_3219702_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|3219701_3220028_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|3220077_3220797_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|3220919_3221378_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|3221696_3222743_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|3222875_3223883_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|3223973_3225110_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|3225102_3225696_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|3225703_3225994_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|3225990_3226557_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|3226575_3227280_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|3227297_3228278_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|3228407_3229094_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|3229140_3229557_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|3229556_3230120_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|3230335_3231283_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|3231302_3232034_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
3231496:3231510	attR	TTGATGCTGGCATGG	NA	NA	NA	NA
WP_000286121.1|3232110_3232818_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|3232913_3233411_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|3233489_3234884_-	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001062140.1|3235376_3236531_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|3236586_3236886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905074.1|3236882_3237047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|3237180_3237312_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|3237320_3239297_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|3239524_3240445_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|3240545_3241304_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|3241579_3243571_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|3243759_3244218_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	3516626	3582617	4787723	tail,tRNA	Salmonella_phage(41.18%)	54	NA	NA
WP_000047238.1|3516626_3519257_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|3519491_3519677_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|3521075_3521642_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|3521638_3522064_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|3522140_3523697_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|3523846_3524362_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|3524707_3526078_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_001187289.1|3526126_3527665_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|3527681_3528854_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|3528980_3529511_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|3530007_3531192_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|3531356_3532352_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|3532421_3533486_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|3535034_3535994_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|3536004_3538149_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275403.1|3538121_3538532_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
WP_000028873.1|3538528_3538774_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_000209805.1|3539045_3539477_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|3540983_3541310_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|3541471_3541822_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|3541856_3542306_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|3543004_3543406_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_000022010.1|3543754_3544282_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|3544291_3544591_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|3544773_3544932_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|3545502_3546180_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_000531291.1|3546221_3547622_-	GABA permease	NA	NA	NA	NA	NA
WP_001095643.1|3547751_3549035_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|3549049_3550498_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|3550519_3551788_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_000993092.1|3551813_3552791_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|3553093_3554608_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|3554618_3555053_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744418.1|3555064_3555874_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|3556028_3556703_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|3556689_3558105_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|3558345_3559251_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|3559972_3560869_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|3561162_3562092_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|3562608_3563661_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_001682025.1|3564682_3566863_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|3566922_3567840_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|3567871_3569116_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111826.1|3569225_3572882_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|3572962_3574078_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000905027.1|3574761_3575328_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|3575470_3576643_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|3576652_3577168_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|3577222_3577525_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|3577539_3577659_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|3577651_3580729_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980381.1|3580725_3581211_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|3581207_3582308_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|3582398_3582617_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 12
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	4268974	4276286	4787723	protease,integrase	Dickeya_phage(16.67%)	7	4270225:4270239	4281404:4281418
WP_001201759.1|4268974_4270093_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|4270089_4272036_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
4270225:4270239	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|4272165_4272387_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|4272710_4273031_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|4273061_4275338_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|4275549_4275747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057514395.1|4275908_4276286_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	7.7e-20
4281404:4281418	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 13
NZ_LT905142	Salmonella enterica subsp. enterica serovar Typhi strain H12ESR00755-001A chromosome 1	4787723	4347411	4389470	4787723	plate,holin,tail,head,terminase	Salmonella_phage(77.78%)	61	NA	NA
WP_001262313.1|4347411_4348704_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|4348748_4348997_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|4349037_4349277_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|4349282_4350164_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|4350160_4351225_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|4351302_4351983_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|4351979_4352765_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|4352770_4353067_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|4353157_4353358_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|4353646_4354051_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|4354180_4354417_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|4354382_4354757_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|4354841_4355825_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|4355827_4356577_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|4356587_4356935_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|4356931_4357456_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|4357455_4357929_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|4357932_4358505_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|4359350_4359530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|4359540_4360038_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|4360222_4360462_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|4360796_4361399_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|4361607_4362219_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|4362215_4362362_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|4362351_4363149_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|4363547_4363673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|4363808_4364258_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|4364474_4364864_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|4364850_4365132_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|4365131_4365746_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_001050879.1|4365742_4366282_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_000495544.1|4366324_4366702_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|4366798_4367026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118117.1|4367115_4367868_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|4367833_4369237_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|4369236_4370706_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|4370590_4371328_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|4371342_4372575_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|4372579_4373077_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|4373088_4374030_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|4374071_4374440_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|4374405_4374813_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|4374809_4375364_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|4375350_4375740_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|4375714_4376278_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|4376281_4377427_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|4377438_4377879_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|4377882_4378335_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|4378512_4380465_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|4380464_4381115_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|4381118_4381421_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|4381423_4382455_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|4382451_4382787_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|4382981_4383713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|4383712_4384141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|4384199_4384955_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|4385195_4385549_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|4385549_4386749_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|4386745_4387426_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|4387425_4388937_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|4388951_4389470_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
