assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001409135.1_10259	NZ_LN890518	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462388 chromosome 1	1	2511089-2511714	1,1	CRT,CRISPRCasFinder	no		c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CCGGCAGGCTGGTCAGNNGGTTANNA,ATCAGCTCCTTCAGTTCTGACGGCAAC	26,27	0	0	NA	NA	NA:NA	10,1	10	Orphan	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|207aa|up_3|NZ_LN890518.1_2505412_2506033_-,NA|53aa|down_1|NZ_LN890518.1_2514577_2514736_+,NA|63aa|down_2|NZ_LN890518.1_2514765_2514954_+	NA|530aa|up_9|NZ_LN890518.1_2498741_2500331_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|115aa|up_8|NZ_LN890518.1_2500334_2500679_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|397aa|up_7|NZ_LN890518.1_2501069_2502260_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|232aa|up_6|NZ_LN890518.1_2502287_2502983_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|587aa|up_5|NZ_LN890518.1_2503134_2504895_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|up_4|NZ_LN890518.1_2505019_2505304_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|207aa|up_3|NZ_LN890518.1_2505412_2506033_-	NA	NA|336aa|up_2|NZ_LN890518.1_2506060_2507068_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|up_1|NZ_LN890518.1_2507247_2507475_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|587aa|up_0|NZ_LN890518.1_2507506_2509267_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|83aa|down_0|NZ_LN890518.1_2512627_2512876_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|53aa|down_1|NZ_LN890518.1_2514577_2514736_+	NA	NA|63aa|down_2|NZ_LN890518.1_2514765_2514954_+	NA	NA|188aa|down_3|NZ_LN890518.1_2515146_2515710_-	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|216aa|down_4|NZ_LN890518.1_2516528_2517176_+	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP	NA|348aa|down_5|NZ_LN890518.1_2517219_2518263_-	COG3088, CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]	NA|186aa|down_6|NZ_LN890518.1_2518259_2518817_-	PRK15412, PRK15412, thiol:disulfide interchange protein DsbE; Provisional	NA|644aa|down_7|NZ_LN890518.1_2518813_2520745_-	TIGR00353, Cytochrome_c-type_biogenesis_protein_CcmF, c-type cytochrome biogenesis protein CcmF	NA|160aa|down_8|NZ_LN890518.1_2520741_2521221_-	PRK13150, PRK13150, cytochrome c maturation protein CcmE	NA|71aa|down_9|NZ_LN890518.1_2521217_2521430_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_001409135.1_10259	NZ_LN890518	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462388 chromosome 1	2	3290598-3293127	2,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	41,41,22	41	TypeI-E	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_LN890518.1_3282464_3283226_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LN890518.1_3283206_3284256_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LN890518.1_3284252_3284732_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LN890518.1_3284731_3285442_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LN890518.1_3285460_3285772_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LN890518.1_3285962_3286286_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LN890518.1_3286336_3286942_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_LN890518.1_3286928_3288368_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LN890518.1_3288377_3289286_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_LN890518.1_3289536_3290583_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LN890518.1_3293223_3293517_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_LN890518.1_3293516_3294437_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_LN890518.1_3294433_3295084_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_LN890518.1_3295065_3295812_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_LN890518.1_3295822_3296881_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_LN890518.1_3296894_3297431_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|down_6|NZ_LN890518.1_3297427_3298978_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|down_7|NZ_LN890518.1_3299398_3302059_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_LN890518.1_3302502_3303456_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_LN890518.1_3303543_3304278_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001409135.1_10259	NZ_LN890518	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462388 chromosome 1	3	3309634-3311249	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,20	26	TypeI-E	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_LN890518.1_3295822_3296881_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_LN890518.1_3296894_3297431_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|up_7|NZ_LN890518.1_3297427_3298978_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|up_6|NZ_LN890518.1_3299398_3302059_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_LN890518.1_3302502_3303456_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_LN890518.1_3303543_3304278_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_LN890518.1_3304353_3306066_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_LN890518.1_3306065_3307865_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_LN890518.1_3308288_3308651_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_LN890518.1_3308738_3309536_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_LN890518.1_3311545_3312217_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_LN890518.1_3312352_3313651_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_LN890518.1_3313733_3315371_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_LN890518.1_3315598_3316399_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_LN890518.1_3317005_3317593_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_LN890518.1_3317672_3320372_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_LN890518.1_3320384_3321158_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_LN890518.1_3321177_3321684_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_LN890518.1_3321698_3322169_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_LN890518.1_3322165_3322702_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_001409135.1_10259	NZ_LN890518	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462388 chromosome 1	4	3643624-3643991	3	PILER-CR	no		c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	ATAGCGTCGTGGACAGTCATTCATCCTGCCGCCCTGTAAAAGCA	44	0	0	NA	NA	NA	3	3	Orphan	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|55aa|up_8|NZ_LN890518.1_3631201_3631366_+,NA	NA|234aa|up_9|NZ_LN890518.1_3630476_3631178_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|55aa|up_8|NZ_LN890518.1_3631201_3631366_+	NA	NA|437aa|up_7|NZ_LN890518.1_3631478_3632789_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|444aa|up_6|NZ_LN890518.1_3632814_3634146_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|455aa|up_5|NZ_LN890518.1_3634461_3635826_-	PRK15040, PRK15040, L-serine ammonia-lyase	NA|765aa|up_4|NZ_LN890518.1_3635895_3638190_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|403aa|up_3|NZ_LN890518.1_3638223_3639432_-	PRK12379, PRK12379, propionate kinase	NA|444aa|up_2|NZ_LN890518.1_3639498_3640830_-	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|330aa|up_1|NZ_LN890518.1_3640850_3641840_-	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|313aa|up_0|NZ_LN890518.1_3641937_3642876_-	PRK10341, PRK10341, transcriptional regulator TdcA	NA|382aa|down_0|NZ_LN890518.1_3644426_3645572_-	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|297aa|down_1|NZ_LN890518.1_3645669_3646560_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|257aa|down_2|NZ_LN890518.1_3646585_3647356_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|524aa|down_3|NZ_LN890518.1_3647885_3649457_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|285aa|down_4|NZ_LN890518.1_3649714_3650569_+	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|424aa|down_5|NZ_LN890518.1_3650688_3651960_+	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|155aa|down_6|NZ_LN890518.1_3651974_3652439_+	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|95aa|down_7|NZ_LN890518.1_3652469_3652754_+	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|458aa|down_8|NZ_LN890518.1_3652757_3654131_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|348aa|down_9|NZ_LN890518.1_3654174_3655218_+	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase
